Cla003091 (gene) Watermelon (97103) v1

Overview
NameCla003091
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr2 : 14158901 .. 14159242 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGATCTAGGTTTTCCATTTTCGGAACCGGTGCTGCTGCTGATAAGGTCGAGAAGTCGGCGAAGAGCGAGTTTTTTCCTGGCCTGAAACTCCGTTCTGATAAAGATGTGTATCGGCCTGGCGATCCGGTTGTTGTTACTATTGAAATTTGCTCCTCTGTCGCTCAATTGGACTGCCCTCTTTTGATCGAACGACTTAGTTTTGAGATTATTGGGCTCCAGAAGTTGGATGCTCAGTGGTTTAGCACTCAGAAGCCAATCCCTGGATCCAAACAACGGAGAGGTTCCAAGTCCCTTCTATATGATATTGTTCTCAACCGTTTCCTTCTCCTTGTGTAA

mRNA sequence

ATGTTTGGATCTAGGTTTTCCATTTTCGGAACCGGTGCTGCTGCTGATAAGGTCGAGAAGTCGGCGAAGAGCGAGTTTTTTCCTGGCCTGAAACTCCGTTCTGATAAAGATGTGTATCGGCCTGGCGATCCGGTTGTTGTTACTATTGAAATTTGCTCCTCTGTCGCTCAATTGGACTGCCCTCTTTTGATCGAACGACTTAGTTTTGAGATTATTGGGCTCCAGAAGTTGGATGCTCAGTGGTTTAGCACTCAGAAGCCAATCCCTGGATCCAAACAACGGAGAGGTTCCAAGTCCCTTCTATATGATATTGTTCTCAACCGTTTCCTTCTCCTTGTGTAA

Coding sequence (CDS)

ATGTTTGGATCTAGGTTTTCCATTTTCGGAACCGGTGCTGCTGCTGATAAGGTCGAGAAGTCGGCGAAGAGCGAGTTTTTTCCTGGCCTGAAACTCCGTTCTGATAAAGATGTGTATCGGCCTGGCGATCCGGTTGTTGTTACTATTGAAATTTGCTCCTCTGTCGCTCAATTGGACTGCCCTCTTTTGATCGAACGACTTAGTTTTGAGATTATTGGGCTCCAGAAGTTGGATGCTCAGTGGTTTAGCACTCAGAAGCCAATCCCTGGATCCAAACAACGGAGAGGTTCCAAGTCCCTTCTATATGATATTGTTCTCAACCGTTTCCTTCTCCTTGTGTAA

Protein sequence

MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCPLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRGSKSLLYDIVLNRFLLLV
Homology
[Close]
BLAST of Cla003091 vs. TrEMBL
Match: A0A0A0KVN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G099730 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.0e-42
Identity = 92/97 (94.85%), Postives = 92/97 (94.85%), Query Frame = 1 

Query: 1  MFGSRFSIFGTGA-AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLD 60
          MFGSRFSIFGTGA AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLD
Sbjct: 1  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60

Query: 61 CPLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG 97
          C LLIERL FEIIGL KLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG 97

[Close]
BLAST of Cla003091 vs. TrEMBL
Match: V4TGT4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031151mg PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.0e-21
Identity = 59/113 (52.21%), Postives = 78/113 (69.03%), Query Frame = 1 

Query: 1   MFGSRFSIFGTGAA-------ADKVEKSAKSE-FFPGLKLRSDKDVYRPGDPVVVTIEIC 60
           M G RFS+FG G         ++KV  ++K++   P LKL++DK+VY PGD V VT+EIC
Sbjct: 1   MLGGRFSLFGGGGGGGGGGSKSNKVANNSKNDGVLPTLKLQTDKNVYTPGDTVFVTVEIC 60

Query: 61  SSVAQLD----CPLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRGSKSLL 102
           + ++  D      LLIE LSFEI G+QKLD+QWF+TQKP+PGSKQRRG  + L
Sbjct: 61  NPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFL 113

[Close]
BLAST of Cla003091 vs. TrEMBL
Match: D7T9G4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02190 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.5e-21
Identity = 56/110 (50.91%), Postives = 73/110 (66.36%), Query Frame = 1 

Query: 6   FSIFGTGAAADKVEK--SAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLD---- 65
           FS FG+G +    +     KSE  P LKLR+DKDVYRPG+ +VV+IEI +    +D    
Sbjct: 10  FSFFGSGDSNKAYDSVGGGKSELVPSLKLRTDKDVYRPGESIVVSIEIHNPSGVVDELSK 69

Query: 66  --------CPLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRGSKSLL 102
                   CPLL+E LSFEI G++KLD+QW++TQKP+PGSKQRRG  + L
Sbjct: 70  KENAGDVLCPLLVEMLSFEIKGIEKLDSQWYATQKPLPGSKQRRGEHTFL 119

[Close]
BLAST of Cla003091 vs. TrEMBL
Match: A0A067ECJ1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008822mg PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 59/117 (50.43%), Postives = 78/117 (66.67%), Query Frame = 1 

Query: 1   MFGSRFSIFGTGAA-----------ADKVEKSAKSE-FFPGLKLRSDKDVYRPGDPVVVT 60
           M G RFS+FG G             ++KV  ++K++   P LKL++DK+VY PGD V VT
Sbjct: 1   MLGGRFSLFGGGGGGGGGGGGGGSKSNKVANNSKNDGVLPTLKLQTDKNVYTPGDTVFVT 60

Query: 61  IEICSSVAQLD----CPLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRGSKSLL 102
           +EIC+ ++  D      LLIE LSFEI G+QKLD+QWF+TQKP+PGSKQRRG  + L
Sbjct: 61  VEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFL 117

[Close]
BLAST of Cla003091 vs. TrEMBL
Match: A0A067EFW1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008822mg PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 59/117 (50.43%), Postives = 78/117 (66.67%), Query Frame = 1 

Query: 1   MFGSRFSIFGTGAA-----------ADKVEKSAKSE-FFPGLKLRSDKDVYRPGDPVVVT 60
           M G RFS+FG G             ++KV  ++K++   P LKL++DK+VY PGD V VT
Sbjct: 1   MLGGRFSLFGGGGGGGGGGGGGGSKSNKVANNSKNDGVLPTLKLQTDKNVYTPGDTVFVT 60

Query: 61  IEICSSVAQLD----CPLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRGSKSLL 102
           +EIC+ ++  D      LLIE LSFEI G+QKLD+QWF+TQKP+PGSKQRRG  + L
Sbjct: 61  VEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFL 117

[Close]
BLAST of Cla003091 vs. NCBI nr
Match: gi|659111152|ref|XP_008455605.1| (PREDICTED: uncharacterized protein LOC103495739 isoform X2 [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-43
Identity = 91/96 (94.79%), Postives = 92/96 (95.83%), Query Frame = 1 

Query: 1  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDC 60
          MFGS+FSIFGTG AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLDC
Sbjct: 1  MFGSKFSIFGTGTAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDC 60

Query: 61 PLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG 97
           LLIERL FEIIGLQKLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 SLLIERLRFEIIGLQKLDAQWFSTQKPIPGSKQRRG 96

[Close]
BLAST of Cla003091 vs. NCBI nr
Match: gi|659111156|ref|XP_008455607.1| (PREDICTED: uncharacterized protein LOC103495739 isoform X4 [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-43
Identity = 91/96 (94.79%), Postives = 92/96 (95.83%), Query Frame = 1 

Query: 1  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDC 60
          MFGS+FSIFGTG AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLDC
Sbjct: 1  MFGSKFSIFGTGTAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDC 60

Query: 61 PLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG 97
           LLIERL FEIIGLQKLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 SLLIERLRFEIIGLQKLDAQWFSTQKPIPGSKQRRG 96

[Close]
BLAST of Cla003091 vs. NCBI nr
Match: gi|659111150|ref|XP_008455604.1| (PREDICTED: uncharacterized protein LOC103495739 isoform X1 [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-43
Identity = 91/96 (94.79%), Postives = 92/96 (95.83%), Query Frame = 1 

Query: 1  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDC 60
          MFGS+FSIFGTG AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLDC
Sbjct: 1  MFGSKFSIFGTGTAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDC 60

Query: 61 PLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG 97
           LLIERL FEIIGLQKLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 SLLIERLRFEIIGLQKLDAQWFSTQKPIPGSKQRRG 96

[Close]
BLAST of Cla003091 vs. NCBI nr
Match: gi|778691846|ref|XP_011653362.1| (PREDICTED: uncharacterized protein LOC101218523 isoform X1 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.5e-42
Identity = 92/97 (94.85%), Postives = 92/97 (94.85%), Query Frame = 1 

Query: 1  MFGSRFSIFGTGA-AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLD 60
          MFGSRFSIFGTGA AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLD
Sbjct: 1  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60

Query: 61 CPLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG 97
          C LLIERL FEIIGL KLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG 97

[Close]
BLAST of Cla003091 vs. NCBI nr
Match: gi|700198512|gb|KGN53670.1| (hypothetical protein Csa_4G099730 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.5e-42
Identity = 92/97 (94.85%), Postives = 92/97 (94.85%), Query Frame = 1 

Query: 1  MFGSRFSIFGTGA-AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLD 60
          MFGSRFSIFGTGA AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLD
Sbjct: 1  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60

Query: 61 CPLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG 97
          C LLIERL FEIIGL KLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG 97

The following BLAST results are available for this feature:
BLAST of Cla003091 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVN2_CUCSA1.0e-4294.85Uncharacterized protein OS=Cucumis sativus GN=Csa_4G099730 PE=4 SV=1[more]
V4TGT4_9ROSI5.0e-2152.21Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031151mg PE=4 SV=1[more]
D7T9G4_VITVI8.5e-2150.91Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02190 PE=4 SV=... [more]
A0A067ECJ1_CITSI1.5e-2050.43Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008822mg PE=4 SV=1[more]
A0A067EFW1_CITSI1.5e-2050.43Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008822mg PE=4 SV=1[more]
BLAST of Cla003091 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111152|ref|XP_008455605.1|1.0e-4394.79PREDICTED: uncharacterized protein LOC103495739 isoform X2 [Cucumis melo][more]
gi|659111156|ref|XP_008455607.1|1.0e-4394.79PREDICTED: uncharacterized protein LOC103495739 isoform X4 [Cucumis melo][more]
gi|659111150|ref|XP_008455604.1|1.0e-4394.79PREDICTED: uncharacterized protein LOC103495739 isoform X1 [Cucumis melo][more]
gi|778691846|ref|XP_011653362.1|1.5e-4294.85PREDICTED: uncharacterized protein LOC101218523 isoform X1 [Cucumis sativus][more]
gi|700198512|gb|KGN53670.1|1.5e-4294.85hypothetical protein Csa_4G099730 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0071554 cell wall organization or biogenesis
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003091Cla003091.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla003091Cla97C10G191840Watermelon (97103) v2wmwmbB311
Cla003091ClCG10G008350Watermelon (Charleston Gray)wcgwmB075
Cla003091Lsi05G008130Bottle gourd (USVL1VR-Ls)lsiwmB381
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003091Watermelon (Charleston Gray)wcgwmB202
Cla003091Watermelon (97103) v1wmwmB005