Cla003063 (gene) Watermelon (97103) v1

Overview
NameCla003063
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionATP synthase subunit alpha (AHRD V1 ***- D5I3B4_CITLA); contains Interpro domain(s) IPR018118 ATPase, F1/A1 complex, alpha/beta subunit, N-terminal
LocationChr4 : 14667744 .. 14667995 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATTAGAAAGTCGAATTACTAACTTTTACACGAATTTTCAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCATGTGTTTATGGATTGAAGGAGATTCAAGTTGGGGAAATGGTGGAATTTGCCAGCAGTGTAAAAGGAATAGGCTTAAATCTTGAGAATGAGAATGTAGGGATTGTTGTCTTTGGTAGTGATATCACGGCCAAATCTATCCTGGAAACAAGCTTGGAAGCCAGATAA

mRNA sequence

TTATTAGAAAGTCGAATTACTAACTTTTACACGAATTTTCAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCATGTGTTTATGGATTGAAGGAGATTCAAGTTGGGGAAATGGTGGAATTTGCCAGCAGTGTAAAAGGAATAGGCTTAAATCTTGAGAATGAGAATGTAGGGATTGTTGTCTTTGGTAGTGATATCACGGCCAAATCTATCCTGGAAACAAGCTTGGAAGCCAGATAA

Coding sequence (CDS)

TTATTAGAAAGTCGAATTACTAACTTTTACACGAATTTTCAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCATGTGTTTATGGATTGAAGGAGATTCAAGTTGGGGAAATGGTGGAATTTGCCAGCAGTGTAAAAGGAATAGGCTTAAATCTTGAGAATGAGAATGTAGGGATTGTTGTCTTTGGTAGTGATATCACGGCCAAATCTATCCTGGAAACAAGCTTGGAAGCCAGATAA

Protein sequence

LLESRITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLNLENENVGIVVFGSDITAKSILETSLEAR
Homology
[Close]
BLAST of Cla003063 vs. Swiss-Prot
Match: ATPAM_BETVU (ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris GN=ATPA PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-28
Identity = 65/73 (89.04%), Postives = 63/73 (86.30%), Query Frame = 1 

Query: 1  LLESRITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLNLENEN 60
          LLESRITNFYTNFQVDEIGRVVSVGDGIA VYGL EIQ GEMVEFAS VKGI LNLENEN
Sbjct: 13 LLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENEN 72

Query: 61 VGIVVFGSDITAK 74
          VGIVVFGSD   K
Sbjct: 73 VGIVVFGSDTAIK 85

[Close]
BLAST of Cla003063 vs. Swiss-Prot
Match: ATPAM_SOYBN (ATP synthase subunit alpha, mitochondrial OS=Glycine max GN=ATPA PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-28
Identity = 65/73 (89.04%), Postives = 63/73 (86.30%), Query Frame = 1 

Query: 1  LLESRITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLNLENEN 60
          LLESRITNFYTNFQVDEIGRVVSVGDGIA VYGL EIQ GEMVEFAS VKGI LNLENEN
Sbjct: 13 LLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENEN 72

Query: 61 VGIVVFGSDITAK 74
          VGIVVFGSD   K
Sbjct: 73 VGIVVFGSDTAIK 85

[Close]
BLAST of Cla003063 vs. Swiss-Prot
Match: ATPAM_OENBI (ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis GN=ATPA PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-28
Identity = 64/73 (87.67%), Postives = 63/73 (86.30%), Query Frame = 1 

Query: 1  LLESRITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLNLENEN 60
          LLESRITNFYTNFQVDEIGRV+SVGDGIA VYGL EIQ GEMVEFAS VKGI LNLENEN
Sbjct: 13 LLESRITNFYTNFQVDEIGRVISVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENEN 72

Query: 61 VGIVVFGSDITAK 74
          VGIVVFGSD   K
Sbjct: 73 VGIVVFGSDTAIK 85

[Close]
BLAST of Cla003063 vs. Swiss-Prot
Match: ATPAM_PEA (ATP synthase subunit alpha, mitochondrial OS=Pisum sativum GN=ATPA PE=3 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 2.0e-28
Identity = 64/73 (87.67%), Postives = 64/73 (87.67%), Query Frame = 1 

Query: 1  LLESRITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLNLENEN 60
          LLESRITNFYTNFQVDEIGRVVSVGDGIA VYGL EIQ GE+VEFAS VKGI LNLENEN
Sbjct: 13 LLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGELVEFASGVKGIALNLENEN 72

Query: 61 VGIVVFGSDITAK 74
          VGIVVFGSD + K
Sbjct: 73 VGIVVFGSDTSIK 85

[Close]
BLAST of Cla003063 vs. Swiss-Prot
Match: ATPAM_ORYSI (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. indica GN=ATPA PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.6e-28
Identity = 64/73 (87.67%), Postives = 63/73 (86.30%), Query Frame = 1 

Query: 1  LLESRITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLNLENEN 60
          LLESR+TNFYTNFQVDEIGRVVSVGDGIA VYGL EIQ GEMVEFAS VKGI LNLENEN
Sbjct: 13 LLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENEN 72

Query: 61 VGIVVFGSDITAK 74
          VGIVVFGSD   K
Sbjct: 73 VGIVVFGSDTAIK 85

[Close]
BLAST of Cla003063 vs. TrEMBL
Match: M8BVG5_AEGTA (ATP synthase subunit alpha OS=Aegilops tauschii GN=F775_13294 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-27
Identity = 64/73 (87.67%), Postives = 66/73 (90.41%), Query Frame = 1 

Query: 1  LLESRITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLNLENEN 60
          LLESR+TNFYTNFQVDEIGRVVSVGDGIACVYGL EIQ GEMVEFAS VKGI LNLENEN
Sbjct: 13 LLESRMTNFYTNFQVDEIGRVVSVGDGIACVYGLNEIQAGEMVEFASGVKGIALNLENEN 72

Query: 61 VGIVVFGSDITAK 74
          VGI+VFGSD   K
Sbjct: 73 VGIIVFGSDTAIK 85

[Close]
BLAST of Cla003063 vs. TrEMBL
Match: A0A023T2K5_9ROSI (ATP synthase subunit alpha OS=Licania alba GN=atp1 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.4e-27
Identity = 66/73 (90.41%), Postives = 66/73 (90.41%), Query Frame = 1 

Query: 1  LLESRITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLNLENEN 60
          LLESRITNFYTNFQVDEIGRVVSVGDGIA VYGLKEIQ GEMVEFAS VKGI LNLENEN
Sbjct: 13 LLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLKEIQAGEMVEFASGVKGIALNLENEN 72

Query: 61 VGIVVFGSDITAK 74
          VGIVVFGSD   K
Sbjct: 73 VGIVVFGSDTAIK 85

[Close]
BLAST of Cla003063 vs. TrEMBL
Match: A0A023T0Z2_9ROSI (ATP synthase subunit alpha OS=Hirtella physophora GN=atp1 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.4e-27
Identity = 66/73 (90.41%), Postives = 66/73 (90.41%), Query Frame = 1 

Query: 1  LLESRITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLNLENEN 60
          LLESRITNFYTNFQVDEIGRVVSVGDGIA VYGLKEIQ GEMVEFAS VKGI LNLENEN
Sbjct: 13 LLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLKEIQAGEMVEFASGVKGIALNLENEN 72

Query: 61 VGIVVFGSDITAK 74
          VGIVVFGSD   K
Sbjct: 73 VGIVVFGSDTAIK 85

[Close]
BLAST of Cla003063 vs. TrEMBL
Match: A0A023T0Y9_9ROSI (ATP synthase subunit alpha OS=Hirtella racemosa GN=atp1 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.4e-27
Identity = 66/73 (90.41%), Postives = 66/73 (90.41%), Query Frame = 1 

Query: 1  LLESRITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLNLENEN 60
          LLESRITNFYTNFQVDEIGRVVSVGDGIA VYGLKEIQ GEMVEFAS VKGI LNLENEN
Sbjct: 13 LLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLKEIQAGEMVEFASGVKGIALNLENEN 72

Query: 61 VGIVVFGSDITAK 74
          VGIVVFGSD   K
Sbjct: 73 VGIVVFGSDTAIK 85

[Close]
BLAST of Cla003063 vs. TrEMBL
Match: A0A023T1P9_9ROSI (ATP synthase subunit alpha OS=Parinari campestris GN=atp1 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.4e-27
Identity = 66/73 (90.41%), Postives = 66/73 (90.41%), Query Frame = 1 

Query: 1  LLESRITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLNLENEN 60
          LLESRITNFYTNFQVDEIGRVVSVGDGIA VYGLKEIQ GEMVEFAS VKGI LNLENEN
Sbjct: 13 LLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLKEIQAGEMVEFASGVKGIALNLENEN 72

Query: 61 VGIVVFGSDITAK 74
          VGIVVFGSD   K
Sbjct: 73 VGIVVFGSDTAIK 85

[Close]
BLAST of Cla003063 vs. NCBI nr
Match: gi|475604639|gb|EMT25798.1| (ATP synthase subunit alpha, mitochondrial [Aegilops tauschii])

HSP 1 Score: 129.8 bits (325), Expect = 2.2e-27
Identity = 64/73 (87.67%), Postives = 66/73 (90.41%), Query Frame = 1 

Query: 1  LLESRITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLNLENEN 60
          LLESR+TNFYTNFQVDEIGRVVSVGDGIACVYGL EIQ GEMVEFAS VKGI LNLENEN
Sbjct: 13 LLESRMTNFYTNFQVDEIGRVVSVGDGIACVYGLNEIQAGEMVEFASGVKGIALNLENEN 72

Query: 61 VGIVVFGSDITAK 74
          VGI+VFGSD   K
Sbjct: 73 VGIIVFGSDTAIK 85

[Close]
BLAST of Cla003063 vs. NCBI nr
Match: gi|295311633|ref|YP_003587244.1| (ATPase subunit 1 [Citrullus lanatus])

HSP 1 Score: 128.6 bits (322), Expect = 4.9e-27
Identity = 66/73 (90.41%), Postives = 66/73 (90.41%), Query Frame = 1 

Query: 1  LLESRITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLNLENEN 60
          LLESRITNFYTNFQVDEIGRVVSVGDGIA VYGLKEIQ GEMVEFAS VKGI LNLENEN
Sbjct: 13 LLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLKEIQAGEMVEFASGVKGIALNLENEN 72

Query: 61 VGIVVFGSDITAK 74
          VGIVVFGSD   K
Sbjct: 73 VGIVVFGSDTAIK 85

[Close]
BLAST of Cla003063 vs. NCBI nr
Match: gi|618627157|gb|AHX81373.1| (ATP synthase F1 subunit 1 (mitochondrion) [Parinari campestris])

HSP 1 Score: 128.6 bits (322), Expect = 4.9e-27
Identity = 66/73 (90.41%), Postives = 66/73 (90.41%), Query Frame = 1 

Query: 1  LLESRITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLNLENEN 60
          LLESRITNFYTNFQVDEIGRVVSVGDGIA VYGLKEIQ GEMVEFAS VKGI LNLENEN
Sbjct: 13 LLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLKEIQAGEMVEFASGVKGIALNLENEN 72

Query: 61 VGIVVFGSDITAK 74
          VGIVVFGSD   K
Sbjct: 73 VGIVVFGSDTAIK 85

[Close]
BLAST of Cla003063 vs. NCBI nr
Match: gi|618627159|gb|AHX81374.1| (ATP synthase F1 subunit 1 (mitochondrion) [Couepia guianensis])

HSP 1 Score: 128.6 bits (322), Expect = 4.9e-27
Identity = 66/73 (90.41%), Postives = 66/73 (90.41%), Query Frame = 1 

Query: 1  LLESRITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLNLENEN 60
          LLESRITNFYTNFQVDEIGRVVSVGDGIA VYGLKEIQ GEMVEFAS VKGI LNLENEN
Sbjct: 13 LLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLKEIQAGEMVEFASGVKGIALNLENEN 72

Query: 61 VGIVVFGSDITAK 74
          VGIVVFGSD   K
Sbjct: 73 VGIVVFGSDTAIK 85

[Close]
BLAST of Cla003063 vs. NCBI nr
Match: gi|618627155|gb|AHX81372.1| (ATP synthase F1 subunit 1 (mitochondrion) [Chrysobalanus icaco])

HSP 1 Score: 128.6 bits (322), Expect = 4.9e-27
Identity = 66/73 (90.41%), Postives = 66/73 (90.41%), Query Frame = 1 

Query: 1  LLESRITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLNLENEN 60
          LLESRITNFYTNFQVDEIGRVVSVGDGIA VYGLKEIQ GEMVEFAS VKGI LNLENEN
Sbjct: 13 LLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLKEIQAGEMVEFASGVKGIALNLENEN 72

Query: 61 VGIVVFGSDITAK 74
          VGIVVFGSD   K
Sbjct: 73 VGIVVFGSDTAIK 85

The following BLAST results are available for this feature:
BLAST of Cla003063 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATPAM_BETVU1.2e-2889.04ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris GN=ATPA PE=3 SV=1[more]
ATPAM_SOYBN1.2e-2889.04ATP synthase subunit alpha, mitochondrial OS=Glycine max GN=ATPA PE=3 SV=1[more]
ATPAM_OENBI1.5e-2887.67ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis GN=ATPA PE=3 SV=1[more]
ATPAM_PEA2.0e-2887.67ATP synthase subunit alpha, mitochondrial OS=Pisum sativum GN=ATPA PE=3 SV=2[more]
ATPAM_ORYSI2.6e-2887.67ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. indica GN=ATPA ... [more]
BLAST of Cla003063 vs. TrEMBL
Match NameE-valueIdentityDescription
M8BVG5_AEGTA1.5e-2787.67ATP synthase subunit alpha OS=Aegilops tauschii GN=F775_13294 PE=3 SV=1[more]
A0A023T2K5_9ROSI3.4e-2790.41ATP synthase subunit alpha OS=Licania alba GN=atp1 PE=3 SV=1[more]
A0A023T0Z2_9ROSI3.4e-2790.41ATP synthase subunit alpha OS=Hirtella physophora GN=atp1 PE=3 SV=1[more]
A0A023T0Y9_9ROSI3.4e-2790.41ATP synthase subunit alpha OS=Hirtella racemosa GN=atp1 PE=3 SV=1[more]
A0A023T1P9_9ROSI3.4e-2790.41ATP synthase subunit alpha OS=Parinari campestris GN=atp1 PE=3 SV=1[more]
BLAST of Cla003063 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|475604639|gb|EMT25798.1|2.2e-2787.67ATP synthase subunit alpha, mitochondrial [Aegilops tauschii][more]
gi|295311633|ref|YP_003587244.1|4.9e-2790.41ATPase subunit 1 [Citrullus lanatus][more]
gi|618627157|gb|AHX81373.1|4.9e-2790.41ATP synthase F1 subunit 1 (mitochondrion) [Parinari campestris][more]
gi|618627159|gb|AHX81374.1|4.9e-2790.41ATP synthase F1 subunit 1 (mitochondrion) [Couepia guianensis][more]
gi|618627155|gb|AHX81372.1|4.9e-2790.41ATP synthase F1 subunit 1 (mitochondrion) [Chrysobalanus icaco][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004100ATPase_F1/V1/A1_a/bsu_N
IPR005294ATP_synth_F1_asu
IPR023366ATP_synth_asu-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0015992proton transport
GO:0046034ATP metabolic process
GO:0015986ATP synthesis coupled proton transport
Vocabulary: Cellular Component
TermDefinition
GO:0045261proton-transporting ATP synthase complex, catalytic core F(1)
Vocabulary: Molecular Function
TermDefinition
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
GO:0046961proton-transporting ATPase activity, rotational mechanism
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0046034 ATP metabolic process
biological_process GO:0015992 proton transport
cellular_component GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005524 ATP binding
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003063Cla003063.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004100ATPase, F1 complex alpha/beta subunit, N-terminal domainPFAMPF02874ATP-synt_ab_Ncoord: 15..68
score: 6.3
IPR004100ATPase, F1 complex alpha/beta subunit, N-terminal domainunknownSSF50615N-terminal domain of alpha and beta subunits of F1 ATP synthasecoord: 1..71
score: 3.14
IPR005294ATPase, F1 complex, alpha subunitPANTHERPTHR15184:SF3ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIALcoord: 1..69
score: 1.0
IPR023366ATP synthase subunit alpha-like domainGENE3DG3DSA:2.40.30.20coord: 2..70
score: 2.3
NoneNo IPR availablePANTHERPTHR15184ATP SYNTHASEcoord: 1..69
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla003063Cla97C04G071200Watermelon (97103) v2wmwmbB291
Cla003063ClCG04G004520Watermelon (Charleston Gray)wcgwmB255
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003063Cucumber (Chinese Long) v3cucwmB354
Cla003063Cucumber (Gy14) v2cgybwmB313