Cla003062 (gene) Watermelon (97103) v1

Overview
NameCla003062
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionVQ motif family protein (AHRD V1 *--- B6TQH0_MAIZE); contains Interpro domain(s) IPR008889 VQ
LocationChr4 : 14569580 .. 14570071 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCCCGCGCCGGCACCGGAAACAACCACAGAATCCTAGACGCCATTCACCGGCGTAAACCCACGAAGAAAACGAAACAACCCAACAAAATAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTAGTCCAAGAACTCACCGGCCAAAACGCTGACTTTCCCGACCCCTCTAAATTCCCCCCCTCCGCCGTCTGCGGCGGCGCCGCCTCCTCAGACCTTGTCCACAACACCGCATCCGGCGGCGATGACGACGATGATGGTGCTAGTAATCTCATGATGAATAATAACAACCCTTCACTTGCCGTCGAGCTGCCGGCGGAGGACGACTTTCTTGGTAGTATTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTGATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCAGCGGCGGTTGTCTATGAATCTTATGCAAGGTGA

mRNA sequence

ATGGACGCCCGCGCCGGCACCGGAAACAACCACAGAATCCTAGACGCCATTCACCGGCGTAAACCCACGAAGAAAACGAAACAACCCAACAAAATAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTAGTCCAAGAACTCACCGGCCAAAACGCTGACTTTCCCGACCCCTCTAAATTCCCCCCCTCCGCCGTCTGCGGCGGCGCCGCCTCCTCAGACCTTGTCCACAACACCGCATCCGGCGGCGATGACGACGATGATGGTGCTAGTAATCTCATGATGAATAATAACAACCCTTCACTTGCCGTCGAGCTGCCGGCGGAGGACGACTTTCTTGGTAGTATTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTGATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCAGCGGCGGTTGTCTATGAATCTTATGCAAGGTGA

Coding sequence (CDS)

ATGGACGCCCGCGCCGGCACCGGAAACAACCACAGAATCCTAGACGCCATTCACCGGCGTAAACCCACGAAGAAAACGAAACAACCCAACAAAATAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTAGTCCAAGAACTCACCGGCCAAAACGCTGACTTTCCCGACCCCTCTAAATTCCCCCCCTCCGCCGTCTGCGGCGGCGCCGCCTCCTCAGACCTTGTCCACAACACCGCATCCGGCGGCGATGACGACGATGATGGTGCTAGTAATCTCATGATGAATAATAACAACCCTTCACTTGCCGTCGAGCTGCCGGCGGAGGACGACTTTCTTGGTAGTATTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTGATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCAGCGGCGGTTGTCTATGAATCTTATGCAAGGTGA

Protein sequence

MDARAGTGNNHRILDAIHRRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR
Homology
[Close]
BLAST of Cla003062 vs. Swiss-Prot
Match: SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.1e-09
Identity = 35/62 (56.45%), Postives = 41/62 (66.13%), Query Frame = 1 

Query: 17 IHRRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNA-DF-PDPSKFP 76
          + R+ P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQ+A D  P+P   P
Sbjct: 22 VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSP 81

[Close]
BLAST of Cla003062 vs. Swiss-Prot
Match: SIB2_ARATH (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=SIB2 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.0e-07
Identity = 32/60 (53.33%), Postives = 36/60 (60.00%), Query Frame = 1 

Query: 19 RRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAV 78
          R  P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQ+A    PS    +AV
Sbjct: 21 RIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTFTAV 80

[Close]
BLAST of Cla003062 vs. TrEMBL
Match: A0A0A0L3J8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.4e-61
Identity = 125/165 (75.76%), Postives = 143/165 (86.67%), Query Frame = 1 

Query: 1   MDARAGTGNNHRILDAIHRRKPTKKTKQP-NKI-KPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA   TG++HR LDA++RRKPTKKTKQP N++ KPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSKFPPSAVC GAAS+D ++NT S G  +DDGA+NL++N+NN SL  E+
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSG-GEDDGATNLIVNSNNSSLVDEV 120

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFP PVIGNFSGLLPA  AAVVYES AR
Sbjct: 121 PAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 164

[Close]
BLAST of Cla003062 vs. TrEMBL
Match: W9R567_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013937 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.5e-18
Identity = 61/154 (39.61%), Postives = 88/154 (57.14%), Query Frame = 1 

Query: 9   NNHRILDAIHRRKPTKKTKQPNKI---KPIKVVYISNPMKVQTSASEFMALVQELTGQNA 68
           +N  +L ++ +RKPTKKT   NK    +P+KVVYISNPMK++TSASEF ALVQELTGQ+A
Sbjct: 3   SNSNVLTSL-QRKPTKKTSANNKTKKTRPVKVVYISNPMKIKTSASEFRALVQELTGQDA 62

Query: 69  DFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVELPAEDDFL 128
           +FPDP+KF       G     +      GGD  +        +NN+ +            
Sbjct: 63  EFPDPTKF---LATNGEDQVGVDSTVKIGGDHSNSQEQGATESNNSSTTTT--------- 122

Query: 129 GSIYNDFEDLIFPPPVIGNF-SGLLPAAAAAVVY 159
            S Y   +D +F P ++ +F +G+ P++A A V+
Sbjct: 123 -SRYEALDDDVFMPQMMESFEAGIFPSSATASVW 142

[Close]
BLAST of Cla003062 vs. TrEMBL
Match: A0A0A0LFH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G820480 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-15
Identity = 51/118 (43.22%), Postives = 72/118 (61.02%), Query Frame = 1 

Query: 21  KPTKKTK--QPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAV 80
           K T+K K  + NK +P+KVVYISNPM+V TSASEF ALVQELTG++A+FPDP+KF P++ 
Sbjct: 19  KTTRKRKSCEENK-QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASS 78

Query: 81  CGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLI 137
           C      D+     +   ++D+             L ++   +DDFL S Y   ED++
Sbjct: 79  CEIMNDDDVEKKVVAAEGEEDE-----------QELLIDSSCDDDFLRSSYESLEDIL 124

[Close]
BLAST of Cla003062 vs. TrEMBL
Match: A0A068ULZ1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028988001 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.9e-15
Identity = 56/129 (43.41%), Postives = 79/129 (61.24%), Query Frame = 1 

Query: 24  KKTKQP-NKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGA 83
           K  KQP NK KP+KVVYISNPMKV+TSASEF ALVQELTGQ+AD PDP+K+  +   GG+
Sbjct: 11  KTNKQPKNKKKPVKVVYISNPMKVKTSASEFRALVQELTGQDADMPDPTKYSDTDSVGGS 70

Query: 84  ASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVELP--AEDDFLGSIYNDFEDLIFPPP 143
              ++  +T     +DD      ++   N     E+P  A+ +  G+   + +DL++ P 
Sbjct: 71  CQEEV--STELKTMEDDQVVQQPLVQPKN-----EMPERADCNIYGTCDREDDDLLYMPE 129

Query: 144 VIGNFSGLL 150
              +F GL+
Sbjct: 131 ---SFPGLV 129

[Close]
BLAST of Cla003062 vs. TrEMBL
Match: I1JN53_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G127800 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-14
Identity = 67/160 (41.88%), Postives = 94/160 (58.75%), Query Frame = 1 

Query: 16  AIHRRKPTKKTK--QPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADF-PDPSK 75
           ++ +R PTKKTK  + N   P+KVVYISNPMK++TSASEF ALVQELTGQ+A+  PDP++
Sbjct: 11  SVQQRTPTKKTKPKKKNTPHPVKVVYISNPMKIKTSASEFRALVQELTGQDAESPPDPTR 70

Query: 76  FPPSAVCGGAASSDLVHNTASGGDDDDDGASNLM----MNNNNPSLA----VELPAEDDF 135
           F        ++S D +       ++D+  + N +    + + N SLA     E   +   
Sbjct: 71  FHGLIHPDSSSSVDHIEE-----EEDNVHSVNCVVPPAVADENMSLAGCYEEEQQQQPSS 130

Query: 136 LGSIYNDFEDL----IFPPPVIGNFSGLLPAAAAAVVYES 161
           + SI N+FE L    +F P +I N S LLP   A+V YES
Sbjct: 131 MESI-NNFEPLDDDDVFTPQMIENISALLP---ASVFYES 161

[Close]
BLAST of Cla003062 vs. NCBI nr
Match: gi|659111355|ref|XP_008455708.1| (PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis melo])

HSP 1 Score: 248.8 bits (634), Expect = 6.4e-63
Identity = 127/165 (76.97%), Postives = 141/165 (85.45%), Query Frame = 1 

Query: 1   MDARAGTGNNHRILDAIHRRKPTKKTKQPNKI--KPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA A TGNN R LDA++RRKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSKFPPSAVC  AAS+D ++NT SGG  DDDGASNL++N+NNPSL  ++
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGG-GDDDGASNLIVNSNNPSLVDDV 139

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Sbjct: 140 PAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 183

[Close]
BLAST of Cla003062 vs. NCBI nr
Match: gi|778694743|ref|XP_011653858.1| (PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 2.1e-61
Identity = 125/165 (75.76%), Postives = 143/165 (86.67%), Query Frame = 1 

Query: 1   MDARAGTGNNHRILDAIHRRKPTKKTKQP-NKI-KPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA   TG++HR LDA++RRKPTKKTKQP N++ KPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSKFPPSAVC GAAS+D ++NT S G  +DDGA+NL++N+NN SL  E+
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSG-GEDDGATNLIVNSNNSSLVDEV 120

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFP PVIGNFSGLLPA  AAVVYES AR
Sbjct: 121 PAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 164

[Close]
BLAST of Cla003062 vs. NCBI nr
Match: gi|703074146|ref|XP_010089743.1| (hypothetical protein L484_013937 [Morus notabilis])

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 61/154 (39.61%), Postives = 88/154 (57.14%), Query Frame = 1 

Query: 9   NNHRILDAIHRRKPTKKTKQPNKI---KPIKVVYISNPMKVQTSASEFMALVQELTGQNA 68
           +N  +L ++ +RKPTKKT   NK    +P+KVVYISNPMK++TSASEF ALVQELTGQ+A
Sbjct: 3   SNSNVLTSL-QRKPTKKTSANNKTKKTRPVKVVYISNPMKIKTSASEFRALVQELTGQDA 62

Query: 69  DFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVELPAEDDFL 128
           +FPDP+KF       G     +      GGD  +        +NN+ +            
Sbjct: 63  EFPDPTKF---LATNGEDQVGVDSTVKIGGDHSNSQEQGATESNNSSTTTT--------- 122

Query: 129 GSIYNDFEDLIFPPPVIGNF-SGLLPAAAAAVVY 159
            S Y   +D +F P ++ +F +G+ P++A A V+
Sbjct: 123 -SRYEALDDDVFMPQMMESFEAGIFPSSATASVW 142

[Close]
BLAST of Cla003062 vs. NCBI nr
Match: gi|778685199|ref|XP_011652185.1| (PREDICTED: uncharacterized protein LOC105434994 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 51/118 (43.22%), Postives = 72/118 (61.02%), Query Frame = 1 

Query: 21  KPTKKTK--QPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAV 80
           K T+K K  + NK +P+KVVYISNPM+V TSASEF ALVQELTG++A+FPDP+KF P++ 
Sbjct: 19  KTTRKRKSCEENK-QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASS 78

Query: 81  CGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLI 137
           C      D+     +   ++D+             L ++   +DDFL S Y   ED++
Sbjct: 79  CEIMNDDDVEKKVVAAEGEEDE-----------QELLIDSSCDDDFLRSSYESLEDIL 124

[Close]
BLAST of Cla003062 vs. NCBI nr
Match: gi|661886847|emb|CDP09565.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 89.0 bits (219), Expect = 8.5e-15
Identity = 56/129 (43.41%), Postives = 79/129 (61.24%), Query Frame = 1 

Query: 24  KKTKQP-NKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGA 83
           K  KQP NK KP+KVVYISNPMKV+TSASEF ALVQELTGQ+AD PDP+K+  +   GG+
Sbjct: 11  KTNKQPKNKKKPVKVVYISNPMKVKTSASEFRALVQELTGQDADMPDPTKYSDTDSVGGS 70

Query: 84  ASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVELP--AEDDFLGSIYNDFEDLIFPPP 143
              ++  +T     +DD      ++   N     E+P  A+ +  G+   + +DL++ P 
Sbjct: 71  CQEEV--STELKTMEDDQVVQQPLVQPKN-----EMPERADCNIYGTCDREDDDLLYMPE 129

Query: 144 VIGNFSGLL 150
              +F GL+
Sbjct: 131 ---SFPGLV 129

The following BLAST results are available for this feature:
BLAST of Cla003062 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SIB1_ARATH9.1e-0956.45Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE... [more]
SIB2_ARATH5.0e-0753.33Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=SIB2 PE... [more]
BLAST of Cla003062 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3J8_CUCSA1.4e-6175.76Uncharacterized protein OS=Cucumis sativus GN=Csa_4G431960 PE=4 SV=1[more]
W9R567_9ROSA7.5e-1839.61Uncharacterized protein OS=Morus notabilis GN=L484_013937 PE=4 SV=1[more]
A0A0A0LFH5_CUCSA1.2e-1543.22Uncharacterized protein OS=Cucumis sativus GN=Csa_3G820480 PE=4 SV=1[more]
A0A068ULZ1_COFCA5.9e-1543.41Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028988001 PE=4 SV=1[more]
I1JN53_SOYBN2.2e-1441.88Uncharacterized protein OS=Glycine max GN=GLYMA_03G127800 PE=4 SV=1[more]
BLAST of Cla003062 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111355|ref|XP_008455708.1|6.4e-6376.97PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis melo][more]
gi|778694743|ref|XP_011653858.1|2.1e-6175.76PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis sativus][more]
gi|703074146|ref|XP_010089743.1|1.1e-1739.61hypothetical protein L484_013937 [Morus notabilis][more]
gi|778685199|ref|XP_011652185.1|1.7e-1543.22PREDICTED: uncharacterized protein LOC105434994 [Cucumis sativus][more]
gi|661886847|emb|CDP09565.1|8.5e-1543.41unnamed protein product [Coffea canephora][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008889VQ
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003062Cla003062.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 40..65
score: 8.0
NoneNo IPR availablePANTHERPTHR33624FAMILY NOT NAMEDcoord: 19..163
score: 1.3
NoneNo IPR availablePANTHERPTHR33624:SF2SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC-RELATEDcoord: 19..163
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla003062Cla97C04G071190Watermelon (97103) v2wmwmbB291
Cla003062ClCG04G004500Watermelon (Charleston Gray)wcgwmB255
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003062Cucumber (Gy14) v2cgybwmB313
Cla003062Cucumber (Chinese Long) v3cucwmB354