Cla003059 (gene) Watermelon (97103) v1

Overview
NameCla003059
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr4 : 14538638 .. 14538997 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTACTTTGCGGAGCATGTCTCGTCTAGGAAAACACAACAGCTCGTGATCCTTGCAGAGAGGCACCAACCTATAAAGAGTGGACTTATATTTACTGTGGAGGCTCCCCTAACTGGTTTCTTTTCAGATATTGGGCTAGAGTTGGATGACAATATGACCCTCTCCGAGCTATCTGTTGAGGTGCCTTTTCATCAAGGGGAAAAGGTGTGGATCCTAAGGTCGCCGATTCATGACACGGCCCCTTCCCTGGATCCATTGTTAACTCTCGGGCGGCGCATGCTGGAAGGCAAGACCCGCTGGAGCACTATTGTGAAAGTCTCAGGTGAATTCACTTTTATCGACTGCTACTGGGAATAG

mRNA sequence

ATGGTTTACTTTGCGGAGCATGTCTCGTCTAGGAAAACACAACAGCTCGTGATCCTTGCAGAGAGGCACCAACCTATAAAGAGTGGACTTATATTTACTGTGGAGGCTCCCCTAACTGGTTTCTTTTCAGATATTGGGCTAGAGTTGGATGACAATATGACCCTCTCCGAGCTATCTGTTGAGGTGCCTTTTCATCAAGGGGAAAAGGTGTGGATCCTAAGGTCGCCGATTCATGACACGGCCCCTTCCCTGGATCCATTGTTAACTCTCGGGCGGCGCATGCTGGAAGGCAAGACCCGCTGGAGCACTATTGTGAAAGTCTCAGGTGAATTCACTTTTATCGACTGCTACTGGGAATAG

Coding sequence (CDS)

ATGGTTTACTTTGCGGAGCATGTCTCGTCTAGGAAAACACAACAGCTCGTGATCCTTGCAGAGAGGCACCAACCTATAAAGAGTGGACTTATATTTACTGTGGAGGCTCCCCTAACTGGTTTCTTTTCAGATATTGGGCTAGAGTTGGATGACAATATGACCCTCTCCGAGCTATCTGTTGAGGTGCCTTTTCATCAAGGGGAAAAGGTGTGGATCCTAAGGTCGCCGATTCATGACACGGCCCCTTCCCTGGATCCATTGTTAACTCTCGGGCGGCGCATGCTGGAAGGCAAGACCCGCTGGAGCACTATTGTGAAAGTCTCAGGTGAATTCACTTTTATCGACTGCTACTGGGAATAG

Protein sequence

MVYFAEHVSSRKTQQLVILAERHQPIKSGLIFTVEAPLTGFFSDIGLELDDNMTLSELSVEVPFHQGEKVWILRSPIHDTAPSLDPLLTLGRRMLEGKTRWSTIVKVSGEFTFIDCYWE
Homology
[Close]
BLAST of Cla003059 vs. NCBI nr
Match: gi|659082744|ref|XP_008442010.1| (PREDICTED: uncharacterized protein LOC103486002 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 5.8e-21
Identity = 53/119 (44.54%), Postives = 75/119 (63.03%), Query Frame = 1 

Query: 1   MVYFAEHVSSRKTQQLVILAERHQPIKSGLIFTVEAPLTGFFSDIGLELDDNMTLSELSV 60
           M+YF E       + LV+  +R+Q  + GL   VE P TG F+D    LD++  L  LSV
Sbjct: 8   MIYFTERFLFG-VRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSILPRLSV 67

Query: 61  EVPFHQGEKVWILRSPIHDTAPSLDPLLTLGRRMLEGKTRWSTIVKVSGEFTFIDCYWE 120
           E+P  +G+  W+L+S IH+  P+ D +LTLG+ ++EG+TRW T+ KV  EF F DCYWE
Sbjct: 68  EIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCYWE 125

[Close]
BLAST of Cla003059 vs. NCBI nr
Match: gi|848853669|ref|XP_012844633.1| (PREDICTED: uncharacterized protein LOC105964676 [Erythranthe guttata])

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-09
Identity = 38/119 (31.93%), Postives = 59/119 (49.58%), Query Frame = 1 

Query: 1   MVYFAEHVSSRKTQQLVILAERHQPIKSGLIFTVEAPLTGFFSDIGLELDDNMTLSELSV 60
           MVYF +  S    +QLV+L +  QP+  G    V  PL G +      L     ++E + 
Sbjct: 4   MVYFKDTRSPLGVEQLVVLDDERQPLDKGTTLVVHTPLIGKYPMQWPRLTSTYNINEWTH 63

Query: 61  EVPFHQGEKVWILRSPIHDTAPSLDPLLTLGRRMLEGKTRWSTIVKVSGEFTFIDCYWE 120
           EV   +  KVW L++  H  +  +  L TLG  +++GK  W   ++ +GEF +   YWE
Sbjct: 64  EVSLSKTLKVWTLQTSHHKYSDEIVHLPTLGHNIIKGKAMWGESLQFTGEFHYTPGYWE 122

[Close]
BLAST of Cla003059 vs. NCBI nr
Match: gi|848857215|ref|XP_012828660.1| (PREDICTED: uncharacterized protein LOC105949899 [Erythranthe guttata])

HSP 1 Score: 65.9 bits (159), Expect = 5.6e-08
Identity = 36/119 (30.25%), Postives = 57/119 (47.90%), Query Frame = 1 

Query: 1   MVYFAEHVSSRKTQQLVILAERHQPIKSGLIFTVEAPLTGFFSDIGLELDDNMTLSELSV 60
           M YF +  S    +QLV+L +  QP+  G    V   L G +      L     ++E + 
Sbjct: 1   MAYFKDTRSPLGVEQLVVLDDERQPLDKGTTMVVHTSLIGRYPMQWPRLTSTYNINEWTH 60

Query: 61  EVPFHQGEKVWILRSPIHDTAPSLDPLLTLGRRMLEGKTRWSTIVKVSGEFTFIDCYWE 120
           EV   +  KVW L++  H  +  +  L TLG  +++GK  W   ++ +GEF +   YWE
Sbjct: 61  EVSLSKTLKVWTLQTSHHKYSDEIVHLPTLGNNIIKGKAMWGESLQFTGEFHYTAGYWE 119

The following BLAST results are available for this feature:
BLAST of Cla003059 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082744|ref|XP_008442010.1|5.8e-2144.54PREDICTED: uncharacterized protein LOC103486002 [Cucumis melo][more]
gi|848853669|ref|XP_012844633.1|1.7e-0931.93PREDICTED: uncharacterized protein LOC105964676 [Erythranthe guttata][more]
gi|848857215|ref|XP_012828660.1|5.6e-0830.25PREDICTED: uncharacterized protein LOC105949899 [Erythranthe guttata][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003059Cla003059.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003059Cucumber (Chinese Long) v3cucwmB354
Cla003059Watermelon (Charleston Gray)wcgwmB255
Cla003059Cucumber (Gy14) v2cgybwmB313