Cla003058 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003058
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr4 : 14482590 .. 14482784 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGATTGTTGTAGCGGTGTCTCTTTTGATATTGCCGCTTGTGCTGCCGCCGTTGCCGCCCCCACCGGTGCTGCTGCTGTTTGTTCCGGTGTTGATTATGTCGTTGCTTCTGTTCTTGGCGCTGTCGCCGTCACAGGTTCCGGCGGAGGAGCACTGTGTGGCTGACGGCGGCGACGGTCACAATTCGGCTTGA

mRNA sequence

ATGTTGATTGTTGTAGCGGTGTCTCTTTTGATATTGCCGCTTGTGCTGCCGCCGTTGCCGCCCCCACCGGTGCTGCTGCTGTTTGTTCCGGTGTTGATTATGTCGTTGCTTCTGTTCTTGGCGCTGTCGCCGTCACAGGTTCCGGCGGAGGAGCACTGTGTGGCTGACGGCGGCGACGGTCACAATTCGGCTTGA

Coding sequence (CDS)

ATGTTGATTGTTGTAGCGGTGTCTCTTTTGATATTGCCGCTTGTGCTGCCGCCGTTGCCGCCCCCACCGGTGCTGCTGCTGTTTGTTCCGGTGTTGATTATGTCGTTGCTTCTGTTCTTGGCGCTGTCGCCGTCACAGGTTCCGGCGGAGGAGCACTGTGTGGCTGACGGCGGCGACGGTCACAATTCGGCTTGA

Protein sequence

MLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPAEEHCVADGGDGHNSA

Homology

[Close]

BLAST of Cla003058 vs. Swiss-Prot
Match: ARGOS_ORYSJ (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japonica GN=ARGOS PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-10
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 1


Query: 1   MLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPAEEHCVADGGDG 60
           +L+ V  SL+ILPLVLPPLPPPP +L+ VPV ++ LLL LA  P+   +       GG G
Sbjct: 107 LLVCVTASLVILPLVLPPLPPPPSMLMLVPVAMLVLLLALAFMPTTTSSSSSAGGGGGGG 166

Query: 61  HNSA 65
            N A
Sbjct: 167 RNGA 170

[Close]

BLAST of Cla003058 vs. Swiss-Prot
Match: ORS1_ARATH (Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana GN=ORS1 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.7e-09
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1


Query: 1  MLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPA 50
          +L+ +++ LLILP  LPPLPPPP  LL +P+L+M LL+FLA SPS  P+
Sbjct: 32 LLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

[Close]

BLAST of Cla003058 vs. Swiss-Prot
Match: ARGOS_BRARP (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis GN=ARGOS PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 7.9e-09
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 1


Query: 1   MLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS 46
           +L+ +  SLLILPLVLPPLPPPP +LL VP+ IM LL+ LA  PS
Sbjct: 79  ILVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFMPS 123

[Close]

BLAST of Cla003058 vs. Swiss-Prot
Match: ARGOS_ARATH (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana GN=ARGOS PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-08
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 1


Query: 1   MLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS 46
           +L+ +  SLLILPLVLPPLPPPP +LL VP+ IM LL+ LA  PS
Sbjct: 72  LLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of Cla003058 vs. Swiss-Prot
Match: ARL_ARATH (ARGOS-like protein OS=Arabidopsis thaliana GN=ARL PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-08
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1


Query: 1   MLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS 46
           +L+ +  SLLILPL+LPPLPPPP +LL +P+ IM LL+ LA  PS
Sbjct: 78  VLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of Cla003058 vs. TrEMBL
Match: A0A0A0L0Y7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G432970 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-22
Identity = 58/64 (90.62%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 1  MLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPAEEHCVADGGDG 60
          MLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS+VPAEEH   DGGD 
Sbjct: 13 MLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEVPAEEHHETDGGDE 72

Query: 61 HNSA 65
           NSA
Sbjct: 73 DNSA 76

[Close]

BLAST of Cla003058 vs. TrEMBL
Match: U5G5G3_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s03610g PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-11
Identity = 34/48 (70.83%), Postives = 44/48 (91.67%), Query Frame = 1


Query: 1   MLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVP 49
           +++V+ V LL+LPLVLPPLPPPP++LLFVPV IMSLL+FLA SPS++P
Sbjct: 82  VMVVLTVFLLVLPLVLPPLPPPPLVLLFVPVFIMSLLVFLAFSPSKLP 129

[Close]

BLAST of Cla003058 vs. TrEMBL
Match: U5G936_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s03620g PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-10
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 2  LIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQ 47
          ++V+ VSLL+LPLVLPPL PPP+L LF+PV IM LLLFLALSPSQ
Sbjct: 13 MVVLTVSLLVLPLVLPPLSPPPLLFLFIPVFIMILLLFLALSPSQ 57

[Close]

BLAST of Cla003058 vs. TrEMBL
Match: A0A068UM56_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028963001 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.8e-10
Identity = 32/51 (62.75%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 1  MLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPAEE 52
          +++V  ++LL+LPLVLPPLPPPPVL+LFVPVL+++LLL+ A  PS+VP  E
Sbjct: 43 IMVVSTLALLLLPLVLPPLPPPPVLVLFVPVLLLALLLYFAFLPSKVPTLE 93

[Close]

BLAST of Cla003058 vs. TrEMBL
Match: U5G904_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s03640g PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.0e-10
Identity = 30/48 (62.50%), Postives = 44/48 (91.67%), Query Frame = 1


Query: 1  MLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVP 49
          +++V+ +S+L+LPLVLPPLPPPP++LLFVP++I+SLL+ LAL  SQ+P
Sbjct: 13 VMVVLTISILVLPLVLPPLPPPPLILLFVPLMILSLLVLLALRSSQMP 60

[Close]

BLAST of Cla003058 vs. NCBI nr
Match: gi|700199561|gb|KGN54719.1| (hypothetical protein Csa_4G432970 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 4.8e-22
Identity = 58/64 (90.62%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 1  MLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPAEEHCVADGGDG 60
          MLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS+VPAEEH   DGGD 
Sbjct: 13 MLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEVPAEEHHETDGGDE 72

Query: 61 HNSA 65
           NSA
Sbjct: 73 DNSA 76

[Close]

BLAST of Cla003058 vs. NCBI nr
Match: gi|566174294|ref|XP_006380976.1| (hypothetical protein POPTR_0006s03610g, partial [Populus trichocarpa])

HSP 1 Score: 75.5 bits (184), Expect = 3.8e-11
Identity = 34/48 (70.83%), Postives = 44/48 (91.67%), Query Frame = 1


Query: 1   MLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVP 49
           +++V+ V LL+LPLVLPPLPPPP++LLFVPV IMSLL+FLA SPS++P
Sbjct: 82  VMVVLTVFLLVLPLVLPPLPPPPLVLLFVPVFIMSLLVFLAFSPSKLP 129

[Close]

BLAST of Cla003058 vs. NCBI nr
Match: gi|566174296|ref|XP_006380977.1| (hypothetical protein POPTR_0006s03620g [Populus trichocarpa])

HSP 1 Score: 72.4 bits (176), Expect = 3.2e-10
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 2  LIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQ 47
          ++V+ VSLL+LPLVLPPL PPP+L LF+PV IM LLLFLALSPSQ
Sbjct: 13 MVVLTVSLLVLPLVLPPLSPPPLLFLFIPVFIMILLLFLALSPSQ 57

[Close]

BLAST of Cla003058 vs. NCBI nr
Match: gi|661886828|emb|CDP09546.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 71.6 bits (174), Expect = 5.5e-10
Identity = 32/51 (62.75%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 1  MLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPAEE 52
          +++V  ++LL+LPLVLPPLPPPPVL+LFVPVL+++LLL+ A  PS+VP  E
Sbjct: 43 IMVVSTLALLLLPLVLPPLPPPPVLVLFVPVLLLALLLYFAFLPSKVPTLE 93

[Close]

BLAST of Cla003058 vs. NCBI nr
Match: gi|566174300|ref|XP_006380979.1| (hypothetical protein POPTR_0006s03640g [Populus trichocarpa])

HSP 1 Score: 71.2 bits (173), Expect = 7.2e-10
Identity = 30/48 (62.50%), Postives = 44/48 (91.67%), Query Frame = 1


Query: 1  MLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVP 49
          +++V+ +S+L+LPLVLPPLPPPP++LLFVP++I+SLL+ LAL  SQ+P
Sbjct: 13 VMVVLTISILVLPLVLPPLPPPPLILLFVPLMILSLLVLLALRSSQMP 60

The following BLAST results are available for this feature:

BLAST of Cla003058 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARGOS_ORYSJ	1.1e-10	50.00	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japon...	[more]
ORS1_ARATH	4.7e-09	57.14	Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana GN=ORS1 PE=2 SV=1	[more]
ARGOS_BRARP	7.9e-09	64.44	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki...	[more]
ARGOS_ARATH	1.0e-08	64.44	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana GN=A...	[more]
ARL_ARATH	1.8e-08	60.00	ARGOS-like protein OS=Arabidopsis thaliana GN=ARL PE=2 SV=1	[more]

BLAST of Cla003058 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Y7_CUCSA	3.3e-22	90.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G432970 PE=4 SV=1	[more]
U5G5G3_POPTR	2.7e-11	70.83	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s03610g P...	[more]
U5G936_POPTR	2.2e-10	75.56	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s03620g PE=4 SV=1	[more]
A0A068UM56_COFCA	3.8e-10	62.75	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028963001 PE=4 SV=1	[more]
U5G904_POPTR	5.0e-10	62.50	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s03640g PE=4 SV=1	[more]

BLAST of Cla003058 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199561\|gb\|KGN54719.1\|	4.8e-22	90.63	hypothetical protein Csa_4G432970 [Cucumis sativus]	[more]
gi\|566174294\|ref\|XP_006380976.1\|	3.8e-11	70.83	hypothetical protein POPTR_0006s03610g, partial [Populus trichocarpa]	[more]
gi\|566174296\|ref\|XP_006380977.1\|	3.2e-10	75.56	hypothetical protein POPTR_0006s03620g [Populus trichocarpa]	[more]
gi\|661886828\|emb\|CDP09546.1\|	5.5e-10	62.75	unnamed protein product [Coffea canephora]	[more]
gi\|566174300\|ref\|XP_006380979.1\|	7.2e-10	62.50	hypothetical protein POPTR_0006s03640g [Populus trichocarpa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003058	Cla003058.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003058	Cucumber (Gy14) v2	cgybwmB313
Cla003058	Cucumber (Chinese Long) v3	cucwmB354
Cla003058	Watermelon (Charleston Gray)	wcgwmB255