Cla003055 (gene) Watermelon (97103) v1

Overview
NameCla003055
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr4 : 14320674 .. 14321024 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCGAAGCCACACCAGCATTTTGGAGATGGAGCAAAGCTACACCAGCATATTTGGAGATGAAACAAAGATGCATCAACATTTTGGAGATGAAGCGAAGTCGCACAAGTATTCTGAAGATGGAGCAAAGCTGCATCAGCATTTTGAAGATGTAATGAAGATGCACCAACATTTTAAAGATAGAGCGAAGATGCACCAACATTCTAGAGATGGCGCGAAGCTGCATCAGTATTCTGTAAATGGAGCAAAGCTGCACCAACATTTTGGAGATGAAGTGAAGTTGCATGAACATTTTGGAGGTGGAGCGAATATGCACCAACATTTTGGAAATACCGCAAAGCTGCATTAG

mRNA sequence

ATGAAGCGAAGCCACACCAGCATTTTGGAGATGGAGCAAAGCTACACCAGCATATTTGGAGATGAAACAAAGATGCATCAACATTTTGGAGATGAAGCGAAGTCGCACAAGTATTCTGAAGATGGAGCAAAGCTGCATCAGCATTTTGAAGATGTAATGAAGATGCACCAACATTTTAAAGATAGAGCGAAGATGCACCAACATTCTAGAGATGGCGCGAAGCTGCATCAGTATTCTGTAAATGGAGCAAAGCTGCACCAACATTTTGGAGATGAAGTGAAGTTGCATGAACATTTTGGAGGTGGAGCGAATATGCACCAACATTTTGGAAATACCGCAAAGCTGCATTAG

Coding sequence (CDS)

ATGAAGCGAAGCCACACCAGCATTTTGGAGATGGAGCAAAGCTACACCAGCATATTTGGAGATGAAACAAAGATGCATCAACATTTTGGAGATGAAGCGAAGTCGCACAAGTATTCTGAAGATGGAGCAAAGCTGCATCAGCATTTTGAAGATGTAATGAAGATGCACCAACATTTTAAAGATAGAGCGAAGATGCACCAACATTCTAGAGATGGCGCGAAGCTGCATCAGTATTCTGTAAATGGAGCAAAGCTGCACCAACATTTTGGAGATGAAGTGAAGTTGCATGAACATTTTGGAGGTGGAGCGAATATGCACCAACATTTTGGAAATACCGCAAAGCTGCATTAG

Protein sequence

MKRSHTSILEMEQSYTSIFGDETKMHQHFGDEAKSHKYSEDGAKLHQHFEDVMKMHQHFKDRAKMHQHSRDGAKLHQYSVNGAKLHQHFGDEVKLHEHFGGGANMHQHFGNTAKLH
Homology
[Close]
BLAST of Cla003055 vs. TrEMBL
Match: H3BYQ8_TETNG (Uncharacterized protein OS=Tetraodon nigroviridis PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 28/81 (34.57%), Postives = 39/81 (48.15%), Query Frame = 1 

Query: 26  HQHFGDEAKSHKYSEDGAKLHQHFEDVMKMHQHFKDRAKMHQHSRDGAKLHQYSVNGAKL 85
           H H  + A  H ++E+GA  H H E+    H H K+ A  H H+ +GA  H ++  GA  
Sbjct: 151 HAHTKEGAPKHAHTEEGAPKHAHTEEGAPKHAHTKEGAPKHAHTEEGAPKHAHTEEGAPK 210

Query: 86  HQHFGDEVKLHEHFGGGANMH 107
           H H  +    H H   GA  H
Sbjct: 211 HAHTEEGAPKHAHTEEGATKH 231

[Close]
BLAST of Cla003055 vs. TrEMBL
Match: H3BYQ8_TETNG (Uncharacterized protein OS=Tetraodon nigroviridis PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-05
Identity = 27/84 (32.14%), Postives = 40/84 (47.62%), Query Frame = 1 

Query: 33  AKSHKYSEDGAKLHQHFEDVMKMHQHFKDRAKMHQHSRDGAKLHQYSVNGAKLHQHFGDE 92
           A  H ++++GA  H H E+    H H ++ A  H H+++GA  H ++  GA  H H  + 
Sbjct: 148 APKHAHTKEGAPKHAHTEEGAPKHAHTEEGAPKHAHTKEGAPKHAHTEEGAPKHAHTEEG 207

Query: 93  VKLHEHFGGGANMHQHFGNTAKLH 117
              H H   GA  H H    A  H
Sbjct: 208 APKHAHTEEGAPKHAHTEEGATKH 231

The following BLAST results are available for this feature:
BLAST of Cla003055 vs. TrEMBL
Match NameE-valueIdentityDescription
H3BYQ8_TETNG1.2e-0634.57Uncharacterized protein OS=Tetraodon nigroviridis PE=3 SV=1[more]
H3BYQ8_TETNG1.4e-0532.14Uncharacterized protein OS=Tetraodon nigroviridis PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003055Cla003055.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla003055ClCG04G004430Watermelon (Charleston Gray)wcgwmB255
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003055Cucumber (Gy14) v2cgybwmB313
Cla003055Cucumber (Chinese Long) v3cucwmB354