Cla003048 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003048
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	CACTA en-spm transposon protein (AHRD V1 -- E5GC72_CUCME)
Location	Chr1 : 15601564 .. 15602276 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTTGTTTTACAGAAAGGAGATGACGGTCAAACAATCGACCCAGTAGAGTTGTTTAGGCGTACGCACTCTAAGAGTGATGTCTCGTTTGTTAATCAGGCTGCTGATGATGCATACGTAAGTTTTTATTCCTTCAATTTCACTTTTCATCTATATAAAGTTATCATACAAATATTTATTCAAATTATTGTTGTAGAGTCAAATGATTGAGTTGAGAGAGGCCTCCACCCAAGAAGGGTCTCAACCAATATCAGGAGAAGAGATATGCGAGCAGGTGTTAGGCACACGATCGGGTTGGGGGCCAAAACCCCAAAAATCAAGAAAATATAACTCATTATCGATTGCATCCTCCTCCAAAATTATAGAGGAGCAACGAAATGAGATACAATCCTTGAAGGCCAGAGTGGATGAATTAGAGAAAAAAAGACAAAATGAAATAGATGAATTGAAAGTCATGGTCTTACAAGTCATGCAACCACAAGGAGATAGGTCATAATAGGTATGAATTTTTCAACTTTTGTCTGGCATGGGGTGGCAGTAGCAGAAGAAGCGGCAGCAGCGACGGCGAGGGGCAGCAGCACCAGCGGCGTTTGGAGGCAGCAGCACCGGCGTCTGGGGCAGCAACAGGTGGCGTCAGGCAGGAGGAGCGGTCGAGCCTTGTTGTTGGGCCGGCAGCAGCGGCTTCGTCGTCGTTCGTCGCCGGCGGGTGA

mRNA sequence

ATGAGATTTGTTTTACAGAAAGGAGATGACGGTCAAACAATCGACCCAGTAGAGTTGTTTAGGCGTACGCACTCTAAGAGTGATGTCTCGTTTGTTAATCAGGCTGCTGATGATGCATACAGTCAAATGATTGAGTTGAGAGAGGCCTCCACCCAAGAAGGGTCTCAACCAATATCAGGAGAAGAGATATGCGAGCAGGTTAGCAGAAGAAGCGGCAGCAGCGACGGCGAGGGGCAGCAGCACCAGCGGCGTTTGGAGGCAGCAGCACCGGCGTCTGGGGCAGCAACAGGTGGCGTCAGGCAGGAGGAGCGGTCGAGCCTTGTTGTTGGGCCGGCAGCAGCGGCTTCGTCGTCGTTCGTCGCCGGCGGGTGA

Coding sequence (CDS)

ATGAGATTTGTTTTACAGAAAGGAGATGACGGTCAAACAATCGACCCAGTAGAGTTGTTTAGGCGTACGCACTCTAAGAGTGATGTCTCGTTTGTTAATCAGGCTGCTGATGATGCATACAGTCAAATGATTGAGTTGAGAGAGGCCTCCACCCAAGAAGGGTCTCAACCAATATCAGGAGAAGAGATATGCGAGCAGGTTAGCAGAAGAAGCGGCAGCAGCGACGGCGAGGGGCAGCAGCACCAGCGGCGTTTGGAGGCAGCAGCACCGGCGTCTGGGGCAGCAACAGGTGGCGTCAGGCAGGAGGAGCGGTCGAGCCTTGTTGTTGGGCCGGCAGCAGCGGCTTCGTCGTCGTTCGTCGCCGGCGGGTGA

Protein sequence

MRFVLQKGDDGQTIDPVELFRRTHSKSDVSFVNQAADDAYSQMIELREASTQEGSQPISGEEICEQVSRRSGSSDGEGQQHQRRLEAAAPASGAATGGVRQEERSSLVVGPAAAASSSFVAGG

Homology

[Close]

BLAST of Cla003048 vs. TrEMBL
Match: E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 29/55 (52.73%), Postives = 44/55 (80.00%), Query Frame = 1


Query: 11  GQTIDPVELFRRTHSKSDVSFVNQAADDAYSQMIELREASTQEGSQPISGEEICE 66
           G+ +D VELFR TH ++  +F++QAA+DA++QM+EL+   T EGSQP+S +EIC+
Sbjct: 222 GEPVDCVELFRETHVRAG-TFMSQAAEDAHNQMLELQSQPTLEGSQPLSEDEICD 275

[Close]

BLAST of Cla003048 vs. NCBI nr
Match: gi|307136235|gb|ADN34071.1| (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 62.8 bits (151), Expect = 4.9e-07
Identity = 29/55 (52.73%), Postives = 44/55 (80.00%), Query Frame = 1


Query: 11  GQTIDPVELFRRTHSKSDVSFVNQAADDAYSQMIELREASTQEGSQPISGEEICE 66
           G+ +D VELFR TH ++  +F++QAA+DA++QM+EL+   T EGSQP+S +EIC+
Sbjct: 222 GEPVDCVELFRETHVRAG-TFMSQAAEDAHNQMLELQSQPTLEGSQPLSEDEICD 275

The following BLAST results are available for this feature:

BLAST of Cla003048 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GC72_CUCME	3.4e-07	52.73	CACTA en-spm transposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla003048 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136235\|gb\|ADN34071.1\|	4.9e-07	52.73	CACTA en-spm transposon protein [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004252	Probable_transposase_24

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003048	Cla003048.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004252	Probable transposase, Ptta/En/Spm, plant	PFAM	PF03004	Transposase_24	coord: 11..55 score: 6.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003048	Cucumber (Gy14) v2	cgybwmB043
Cla003048	Cucumber (Gy14) v2	cgybwmB057
Cla003048	Melon (DHL92) v3.6.1	medwmB159
Cla003048	Melon (DHL92) v3.6.1	medwmB167
Cla003048	Silver-seed gourd	carwmB0001
Cla003048	Silver-seed gourd	carwmB0002
Cla003048	Cucumber (Chinese Long) v3	cucwmB049
Cla003048	Cucumber (Chinese Long) v3	cucwmB063
Cla003048	Watermelon (97103) v2	wmwmbB241
Cla003048	Wax gourd	wgowmB504
Cla003048	Wax gourd	wgowmB510
Cla003048	Cucumber (Gy14) v1	cgywmB581
Cla003048	Cucurbita maxima (Rimu)	cmawmB384
Cla003048	Cucurbita maxima (Rimu)	cmawmB386
Cla003048	Cucurbita moschata (Rifu)	cmowmB376
Cla003048	Cucurbita moschata (Rifu)	cmowmB384
Cla003048	Melon (DHL92) v3.5.1	mewmB163
Cla003048	Watermelon (Charleston Gray)	wcgwmB148
Cla003048	Cucumber (Chinese Long) v2	cuwmB042
Cla003048	Cucumber (Chinese Long) v2	cuwmB057
Cla003048	Cucurbita pepo (Zucchini)	cpewmB048
Cla003048	Bottle gourd (USVL1VR-Ls)	lsiwmB264