Cla003033 (gene) Watermelon (97103) v1

Overview
NameCla003033
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 15209693 .. 15211728 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCAACCTATAAAGAACAGACTTAGCTTTCCTGTGAAGGCTCCCCTAACTGGTCCTTTTTCAGATATCTGGCCAGAGTTAGATGACAATATGACCCTCCCTAAACTATCTGTTGAGGTGCCTTTTCATCAGGGGGAAAAGGTGTGGATCCTAAGGTCTTCCCCGGATCGATTGTTAACTCTCGGACGACGTATGCTCAAAGGCGAGGCCCGTTGGAACACCATTGTGAAAGTCCCTGGTGAATTCACTTTTATCGTCTGCTACTGGAAATGGCTGGAGCTTATAGTTAGCCGAAATGAACGGTTTCTTCACGATGTTTGTTTGCTTAAAGCGGTGATGGTCTCTTCATATACATATGACTGCAATAATGATGTGGTTCGGGCCTTTTATGAGGCTTGGTGTCCGTCTATACCATGGCGGGTGAAATATTCATTTCTTTATGGGACCTATGGTCGCTTAAGGGTCTTTCGATTAGGGGGACTTTGTATGTGGAGGTCATTCCTTGCTATAAAGAATTAACCGATTCGCGAGAGAAAAGAAAATATCTCTAGAAGACTTGTGAGCATCTGTTTGCAACCTACTATTCGATAGTTTACTCCCAGAGGAAAGACCGTGCATCGTCCTCAAAAAATGACTCCCAAGTAACTATAAGCTCCTGAATCTCATTCTGGTTCCTTGGGGCTCGAAAATATAATAAGCCTCCTACACGAAAGCAAAAGAAAGCTTCCCGCTCTTGGTCCACTCATAACCCGGATGGTGCAAAAATCAAGTATCGAGCCTGGTCGACTAGAGAAAATATGCGATTCAAGGAACTTGGGATAGAAGACACTTTGAAAGACAAGACATATCTGGCTGCTTTTTTGTCCTGTTGGTTGTGTCTTTTCGTGTTCCCCCAAAAAGGAGCTTTCCTTCGCCTAAGAGTTTTTATTAAGGTTGCTAGCACGATGGCTAATGGGAAGTCTTACAGCCTTGCCATTCCAGTCCTAGCCAATATATATCATGGTCTAGGGTTGATTATCAAAGCTTCCAACCCAATTGGACGCATGGACTTTCACTTTCCTATGCATTATGTCCACAACTGACTGGCCCATTACTTTAACACGCATTACCTCGTTCCTGTGGATGTGCGGGGTCCAAAGATGGCCAATTTTTCTGGGGAAGGTGGCTCGATCTATTTTGGGGAATACGAAGCACGAGAGTTGATCCATAGAGGTGCAAACATTCAATGGCATGTAACTATCCAAGGTCGAAATAGGCATGAGCGTTTGGTTAATAATAATGACTTATAGTCTCAACATTCTTGCCAAATTTCCAGCATGCGATCCGGTTATGTATTGTCCCGGTGTGGAGATGCCTTAATACTAGAATCATACAATCCTTATCGATTTGGACGACAACTTGGATTTTATCAAGACACTCTTAATGATATAGGGGGGATGCCCCCTGCCGCTACAGTTAATAACATCTTATATTACTTCAGGGTTTGCACCAGACATAACACATTATCCTAAGTGTTCTTGCCAACTTGTAAGTTGGAGCCACGTAACCATGTTACATCACAATACAGAAATTGGTGGCTGTCAAAACATGGGAGTTATTTTGAAGATAACATACATCAACTAATAAGTAGTACTATTCCTCCCTTATCGCAACCCCGACTACCCAAGAACAAAGGGGTCAACCAAGGTGGCAAACAACTTCGTCTTATCAGAGAAGCGATTCGTACCTCTCAAGACGATGATGCGACCCATGCGGAAGGGAGCCACAGTAGTACCAGTGATCATCATTAAAAGAGACCCCAAAGAAGGTGAAAGCATCCTGCGATAATTTTTTTGAAGGGGTTCCAAGTGCTTCAGGACTCCTTAGTGCTACTATACCGCTGGTATGTATGCTCTCTTCTTAAGTTCTTTTTCTCTTCTTTACCAAGTAATTTAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGTCTCCATTGAGTCTTCACCTTTAAGAGCTTGCGGGGTTGAACAGTGA

mRNA sequence

ATGCATCAACCTATAAAGAACAGACTTAGCTTTCCTGTGAAGGCTCCCCTAACTGGTCCTTTTTCAGATATCTGGCCAGAGTTAGATGACAATATGACCCTCCCTAAACTATCTGTTGAGGTGCCTTTTCATCAGGGGGAAAAGGTGTGGATCCTAAGGTCTTCCCCGGATCGATTGTTAACTCTCGGACGACGTATGCTCAAAGGCGAGGCCCGTTGGAACACCATTGTGAAAGTCCCTGGTGAATTCACTTTTATCGTCTGCTACTGGAAATGGCTGGAGCTTATAGTTAGCCGAAATGAACGGTTTCTTCACGATGTTTGTTTGCTTAAAGCGGTGATGGTCTCTTCATATACATATGACTGCAATAATGATGTGGTTCGGGCCTTTTATGAGGCTTGGTGTCCGTCTATACCATGGCGGGGGTTCCAAGTGCTTCAGGACTCCTTAGTGCTACTATACCGCTGGTATGTATGCTCTCTTCTTAAGTTCTTTTTCTCTTCTTTACCAAGTAATTTAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGTCTCCATTGAGTCTTCACCTTTAAGAGCTTGCGGGGTTGAACAGTGA

Coding sequence (CDS)

ATGCATCAACCTATAAAGAACAGACTTAGCTTTCCTGTGAAGGCTCCCCTAACTGGTCCTTTTTCAGATATCTGGCCAGAGTTAGATGACAATATGACCCTCCCTAAACTATCTGTTGAGGTGCCTTTTCATCAGGGGGAAAAGGTGTGGATCCTAAGGTCTTCCCCGGATCGATTGTTAACTCTCGGACGACGTATGCTCAAAGGCGAGGCCCGTTGGAACACCATTGTGAAAGTCCCTGGTGAATTCACTTTTATCGTCTGCTACTGGAAATGGCTGGAGCTTATAGTTAGCCGAAATGAACGGTTTCTTCACGATGTTTGTTTGCTTAAAGCGGTGATGGTCTCTTCATATACATATGACTGCAATAATGATGTGGTTCGGGCCTTTTATGAGGCTTGGTGTCCGTCTATACCATGGCGGGGGTTCCAAGTGCTTCAGGACTCCTTAGTGCTACTATACCGCTGGTATGTATGCTCTCTTCTTAAGTTCTTTTTCTCTTCTTTACCAAGTAATTTAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGTCTCCATTGAGTCTTCACCTTTAAGAGCTTGCGGGGTTGAACAGTGA

Protein sequence

MHQPIKNRLSFPVKAPLTGPFSDIWPELDDNMTLPKLSVEVPFHQGEKVWILRSSPDRLLTLGRRMLKGEARWNTIVKVPGEFTFIVCYWKWLELIVSRNERFLHDVCLLKAVMVSSYTYDCNNDVVRAFYEAWCPSIPWRGFQVLQDSLVLLYRWYVCSLLKFFFSSLPSNLNFFFFFFFFFFFFFFFAVSIESSPLRACGVEQ
Homology
[Close]
BLAST of Cla003033 vs. NCBI nr
Match: gi|848853669|ref|XP_012844633.1| (PREDICTED: uncharacterized protein LOC105964676 [Erythranthe guttata])

HSP 1 Score: 95.9 bits (237), Expect = 8.7e-17
Identity = 50/142 (35.21%), Postives = 76/142 (53.52%), Query Frame = 1 

Query: 3   QPIKNRLSFPVKAPLTGPFSDIWPELDDNMTLPKLSVEVPFHQGEKVWILRSSPDR---- 62
           QP+    +  V  PL G +   WP L     + + + EV   +  KVW L++S  +    
Sbjct: 27  QPLDKGTTLVVHTPLIGKYPMQWPRLTSTYNINEWTHEVSLSKTLKVWTLQTSHHKYSDE 86

Query: 63  ---LLTLGRRMLKGEARWNTIVKVPGEFTFIVCYWKWLELIVSRNERFLHDVCLLKAVMV 122
              L TLG  ++KG+A W   ++  GEF +   YW+W E ++SR E  L    L  AV  
Sbjct: 87  IVHLPTLGHNIIKGKAMWGESLQFTGEFHYTPGYWEWTEDVLSRCESKLISAQLYDAVYA 146

Query: 123 SSYTYDCNNDVVRAFYEAWCPS 138
           S +TYD N+++++AF EAWCP+
Sbjct: 147 SLFTYDRNSEIIKAFCEAWCPT 168

[Close]
BLAST of Cla003033 vs. NCBI nr
Match: gi|848857215|ref|XP_012828660.1| (PREDICTED: uncharacterized protein LOC105949899 [Erythranthe guttata])

HSP 1 Score: 89.4 bits (220), Expect = 8.2e-15
Identity = 46/141 (32.62%), Postives = 73/141 (51.77%), Query Frame = 1 

Query: 3   QPIKNRLSFPVKAPLTGPFSDIWPELDDNMTLPKLSVEVPFHQGEKVWILRSSPDR---- 62
           QP+    +  V   L G +   WP L     + + + EV   +  KVW L++S  +    
Sbjct: 24  QPLDKGTTMVVHTSLIGRYPMQWPRLTSTYNINEWTHEVSLSKTLKVWTLQTSHHKYSDE 83

Query: 63  ---LLTLGRRMLKGEARWNTIVKVPGEFTFIVCYWKWLELIVSRNERFLHDVCLLKAVMV 122
              L TLG  ++KG+A W   ++  GEF +   YW+W E ++SR E  L    +  +V  
Sbjct: 84  IVHLPTLGNNIIKGKAMWGESLQFTGEFHYTAGYWEWTEDVLSRCESKLISAQIYDSVYA 143

Query: 123 SSYTYDCNNDVVRAFYEAWCP 137
           S +TYD N+++++ F EAWCP
Sbjct: 144 SLFTYDRNSEIIKVFCEAWCP 164

[Close]
BLAST of Cla003033 vs. NCBI nr
Match: gi|848912051|ref|XP_012854345.1| (PREDICTED: uncharacterized protein LOC105973838, partial [Erythranthe guttata])

HSP 1 Score: 73.6 bits (179), Expect = 4.6e-10
Identity = 32/82 (39.02%), Postives = 51/82 (62.20%), Query Frame = 1 

Query: 54  SSPDRLLTLGRRMLKGEARWNTIVKVPGEFTFIVCYWKWLELIVSRNERFLHDVCLLKAV 113
           SSP  L TLG  ++KG+ +W   +++ G F F   YW+W E ++SR +       +  +V
Sbjct: 36  SSPSLLPTLGGNIVKGKVKWGDTLELSGGFQFFRGYWEWTEDVLSRCQHKRKSAKIYDSV 95

Query: 114 MVSSYTYDCNNDVVRAFYEAWC 136
             S +TYD N++V++AF+EAWC
Sbjct: 96  YASLFTYDYNSEVMKAFFEAWC 117

The following BLAST results are available for this feature:
BLAST of Cla003033 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|848853669|ref|XP_012844633.1|8.7e-1735.21PREDICTED: uncharacterized protein LOC105964676 [Erythranthe guttata][more]
gi|848857215|ref|XP_012828660.1|8.2e-1532.62PREDICTED: uncharacterized protein LOC105949899 [Erythranthe guttata][more]
gi|848912051|ref|XP_012854345.1|4.6e-1039.02PREDICTED: uncharacterized protein LOC105973838, partial [Erythranthe guttata][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003033Cla003033.1mRNA