Cla003028 (gene) Watermelon (97103) v1

NameCla003028
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSec23/sec24 transport family protein (AHRD V1 **-- D7LHL0_ARALL)
LocationChr1 : 15057565 .. 15058622 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCTTCAGGAACTTCGCTTGTTGATGTTGCTTTCTCTCAGTGTCCGCAACTTCAATCTCTACCTCGCTTGGTCTTTGCTTTACTTAGGAACCCTCTCCTTCGATTCCATGAGGAAGGTATTCATCCTGACTACCGGATCTACCTGCAATGCCTTTTCAGGTAATTTTATGACCACCATTATTTAGAAGAATGTCATCTCCCATTATTAGGGTTGCAATATCATAATTCCCCTTCAAATTTTCGAATTCAGTACCTTTTACTTTTCTTTGTTTTTGGGGAACAAGCCTAATCCGAAACTGCTTTATATCTTAGTATATTATCTAATTTATCTTATCCTACTCTTGATCCAGTTCTACCATTTCTTTGGAGGAGTATGTGCTGATATAGAAATTTTAATACAACTTGATAATTTTCGTGTTAGAAACAAGCTCAAGAATATCCTCTAAATATGGATATTTGTCCTCTCCTGTTTCTTAAGTGTCATTGTCGTGTAACTTATATCTTTTACTTGTGCAGTGCACTTGAACCAAGTTCCCTACATTGTGCTGTCCCTACACTGTGCTGTGTATCCAGTGCTGACATCATATTCTACCCCGGACATTCAAGCTTATCCACGTCACTCATTGAGTCGTGCTGCACTGATTACTAGTGGCAGTCCGATATTTTTCCTTGACGCATTCACAACTCTAATTGTGTTTTATTCTTCCACTGCAGACCCTACGCTTCCGTTTCCTCCACCTCAAGATTGTAAGATAATTTATTGCTTTCATGTGGGAAGGATGATGCTTTCAAAGTGTGGTTGAAGGCTCTTTTTTAAACTTCTTGCCATGCTGATTTTTCAGGTTTGTTAAGGACTACAATTAACGAACTAAAACAAGAGAGATGCATCACCCCTAGGCTCATATTTATCCGAGGAGGTCAGGATGATGCGACAGCTTTTGAAAACTATCTTATCGAGGAACAGGACGTTGATGGAAGTGGCCTCACGAGCGTCATGGGTTTTGTTTCCTTCCTGGAAGATGTCAAGCAGAGTGTTTTGGAATATTTGAAATAG

mRNA sequence

ATGGAGCTTCAGGAACTTCGCTTGTTGATGTTGCTTTCTCTCAGTGTCCGCAACTTCAATCTCTACCTCGCTTGGTCTTTGCTTTACTTAGGAACCCTCTCCTTCGATTCCATGAGGAAGGTATTCATCCTGACTACCGGATCTACCTGCAATGCCTTTTCAGTGCACTTGAACCAAGTTCCCTACATTGTGCTGTCCCTACACTGTGCTGTGTATCCAGTGCTGACATCATATTCTACCCCGGACATTCAAGCTTATCCACGTCACTCATTGAGTCGTGCTGCACTGATTACTAGTGGCAGTCCGATATTTTTCCTTGACGCATTCACAACTCTAATTGTGTTTTATTCTTCCACTGCAGACCCTACGCTTCCGTTTCCTCCACCTCAAGATTGTTTGTTAAGGACTACAATTAACGAACTAAAACAAGAGAGATGCATCACCCCTAGGCTCATATTTATCCGAGGAGGTCAGGATGATGCGACAGCTTTTGAAAACTATCTTATCGAGGAACAGGACGTTGATGGAAGTGGCCTCACGAGCGTCATGGGTTTTGTTTCCTTCCTGGAAGATGTCAAGCAGAGTGTTTTGGAATATTTGAAATAG

Coding sequence (CDS)

ATGGAGCTTCAGGAACTTCGCTTGTTGATGTTGCTTTCTCTCAGTGTCCGCAACTTCAATCTCTACCTCGCTTGGTCTTTGCTTTACTTAGGAACCCTCTCCTTCGATTCCATGAGGAAGGTATTCATCCTGACTACCGGATCTACCTGCAATGCCTTTTCAGTGCACTTGAACCAAGTTCCCTACATTGTGCTGTCCCTACACTGTGCTGTGTATCCAGTGCTGACATCATATTCTACCCCGGACATTCAAGCTTATCCACGTCACTCATTGAGTCGTGCTGCACTGATTACTAGTGGCAGTCCGATATTTTTCCTTGACGCATTCACAACTCTAATTGTGTTTTATTCTTCCACTGCAGACCCTACGCTTCCGTTTCCTCCACCTCAAGATTGTTTGTTAAGGACTACAATTAACGAACTAAAACAAGAGAGATGCATCACCCCTAGGCTCATATTTATCCGAGGAGGTCAGGATGATGCGACAGCTTTTGAAAACTATCTTATCGAGGAACAGGACGTTGATGGAAGTGGCCTCACGAGCGTCATGGGTTTTGTTTCCTTCCTGGAAGATGTCAAGCAGAGTGTTTTGGAATATTTGAAATAG

Protein sequence

MELQELRLLMLLSLSVRNFNLYLAWSLLYLGTLSFDSMRKVFILTTGSTCNAFSVHLNQVPYIVLSLHCAVYPVLTSYSTPDIQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADPTLPFPPPQDCLLRTTINELKQERCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGFVSFLEDVKQSVLEYLK
BLAST of Cla003028 vs. TrEMBL
Match: A0A0A0LVF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G164680 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.1e-68
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 1

Query: 66  SLHCAVYPVLTSYSTPDIQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADPTLP 125
           SLHCAVYPVLTSYSTPDIQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTAD TLP
Sbjct: 176 SLHCAVYPVLTSYSTPDIQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADATLP 235

Query: 126 FPPPQDCLLRTTINELKQERCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGF 185
           FPPPQDCLLR+TINELK++RCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGF
Sbjct: 236 FPPPQDCLLRSTINELKKDRCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGF 295

Query: 186 VSFLEDVKQSVLEYLK 202
           VSFLEDVKQSVLEYLK
Sbjct: 296 VSFLEDVKQSVLEYLK 311

BLAST of Cla003028 vs. TrEMBL
Match: A0A061GVH3_THECC (Sec23/sec24 transport family protein isoform 1 OS=Theobroma cacao GN=TCM_041394 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.3e-64
Identity = 123/136 (90.44%), Postives = 132/136 (97.06%), Query Frame = 1

Query: 66  SLHCAVYPVLTSYSTPDIQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADPTLP 125
           SLH A+YPVLTSYSTPD QAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADP+LP
Sbjct: 610 SLHHAIYPVLTSYSTPDKQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADPSLP 669

Query: 126 FPPPQDCLLRTTINELKQERCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGF 185
           FPPPQDCLLR TIN+LKQ+RCITP+L+FI+GGQDDATAFENYLIEEQDVDGSGLTSVMGF
Sbjct: 670 FPPPQDCLLRATINKLKQDRCITPKLLFIQGGQDDATAFENYLIEEQDVDGSGLTSVMGF 729

Query: 186 VSFLEDVKQSVLEYLK 202
           VSFLED+ QSVLEY+K
Sbjct: 730 VSFLEDITQSVLEYIK 745

BLAST of Cla003028 vs. TrEMBL
Match: M5W7E9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001892mg PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.8e-64
Identity = 124/136 (91.18%), Postives = 130/136 (95.59%), Query Frame = 1

Query: 66  SLHCAVYPVLTSYSTPDIQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADPTLP 125
           SLH AVYPVLTSYSTPD QAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADPTLP
Sbjct: 608 SLHRAVYPVLTSYSTPDKQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADPTLP 667

Query: 126 FPPPQDCLLRTTINELKQERCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGF 185
           FPPP DCLLRT IN+LKQERC+TP+LIFIRGG+DDATAFENYLIEEQDV+GSGLTSVMGF
Sbjct: 668 FPPPHDCLLRTVINKLKQERCVTPKLIFIRGGKDDATAFENYLIEEQDVNGSGLTSVMGF 727

Query: 186 VSFLEDVKQSVLEYLK 202
           VSFLEDV Q VLEY+K
Sbjct: 728 VSFLEDVTQGVLEYMK 743

BLAST of Cla003028 vs. TrEMBL
Match: A0A0B0N5D6_GOSAR (Transport protein sec24-1 OS=Gossypium arboreum GN=F383_11793 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.5e-63
Identity = 120/136 (88.24%), Postives = 131/136 (96.32%), Query Frame = 1

Query: 66  SLHCAVYPVLTSYSTPDIQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADPTLP 125
           SLH A+YPVLTSYSTPD QAYPRHSLSRAALITSGSPIFFLDA+TTLIVFYSSTADP+LP
Sbjct: 611 SLHRAIYPVLTSYSTPDKQAYPRHSLSRAALITSGSPIFFLDAYTTLIVFYSSTADPSLP 670

Query: 126 FPPPQDCLLRTTINELKQERCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGF 185
           FPPP DCLLR+TIN+LKQERCITP+LIFIRGGQDDA+ FENYLIEEQDV+G+GLTSVMGF
Sbjct: 671 FPPPHDCLLRSTINKLKQERCITPKLIFIRGGQDDASVFENYLIEEQDVNGTGLTSVMGF 730

Query: 186 VSFLEDVKQSVLEYLK 202
           VSFLED+ QSVLEY+K
Sbjct: 731 VSFLEDITQSVLEYMK 746

BLAST of Cla003028 vs. TrEMBL
Match: A0A0D2QX63_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G010100 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.5e-63
Identity = 120/136 (88.24%), Postives = 131/136 (96.32%), Query Frame = 1

Query: 66  SLHCAVYPVLTSYSTPDIQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADPTLP 125
           SLH A+YPVLTSYSTPD QAYPRHSLSRAALITSGSPIFFLDA+TTLIVFYSSTADP+LP
Sbjct: 611 SLHRAIYPVLTSYSTPDKQAYPRHSLSRAALITSGSPIFFLDAYTTLIVFYSSTADPSLP 670

Query: 126 FPPPQDCLLRTTINELKQERCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGF 185
           FPPP DCLLR+TIN+LKQERCITP+LIFIRGGQDDA+ FENYLIEEQDV+G+GLTSVMGF
Sbjct: 671 FPPPHDCLLRSTINKLKQERCITPKLIFIRGGQDDASVFENYLIEEQDVNGTGLTSVMGF 730

Query: 186 VSFLEDVKQSVLEYLK 202
           VSFLED+ QSVLEY+K
Sbjct: 731 VSFLEDITQSVLEYMK 746

BLAST of Cla003028 vs. NCBI nr
Match: gi|449443450|ref|XP_004139490.1| (PREDICTED: protein transport protein sec24 [Cucumis sativus])

HSP 1 Score: 267.7 bits (683), Expect = 1.6e-68
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 1

Query: 66  SLHCAVYPVLTSYSTPDIQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADPTLP 125
           SLHCAVYPVLTSYSTPDIQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTAD TLP
Sbjct: 607 SLHCAVYPVLTSYSTPDIQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADATLP 666

Query: 126 FPPPQDCLLRTTINELKQERCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGF 185
           FPPPQDCLLR+TINELK++RCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGF
Sbjct: 667 FPPPQDCLLRSTINELKKDRCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGF 726

Query: 186 VSFLEDVKQSVLEYLK 202
           VSFLEDVKQSVLEYLK
Sbjct: 727 VSFLEDVKQSVLEYLK 742

BLAST of Cla003028 vs. NCBI nr
Match: gi|700209838|gb|KGN64934.1| (hypothetical protein Csa_1G164680 [Cucumis sativus])

HSP 1 Score: 267.7 bits (683), Expect = 1.6e-68
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 1

Query: 66  SLHCAVYPVLTSYSTPDIQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADPTLP 125
           SLHCAVYPVLTSYSTPDIQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTAD TLP
Sbjct: 176 SLHCAVYPVLTSYSTPDIQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADATLP 235

Query: 126 FPPPQDCLLRTTINELKQERCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGF 185
           FPPPQDCLLR+TINELK++RCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGF
Sbjct: 236 FPPPQDCLLRSTINELKKDRCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGF 295

Query: 186 VSFLEDVKQSVLEYLK 202
           VSFLEDVKQSVLEYLK
Sbjct: 296 VSFLEDVKQSVLEYLK 311

BLAST of Cla003028 vs. NCBI nr
Match: gi|659071681|ref|XP_008461390.1| (PREDICTED: protein transport protein SEC24 [Cucumis melo])

HSP 1 Score: 266.9 bits (681), Expect = 2.8e-68
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1

Query: 66  SLHCAVYPVLTSYSTPDIQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADPTLP 125
           SLHCAVYPVLTSYSTPD+QAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTAD TLP
Sbjct: 607 SLHCAVYPVLTSYSTPDLQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADATLP 666

Query: 126 FPPPQDCLLRTTINELKQERCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGF 185
           FPPPQDCLLR+TINELK++RCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGF
Sbjct: 667 FPPPQDCLLRSTINELKKDRCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGF 726

Query: 186 VSFLEDVKQSVLEYLK 202
           VSFLEDVKQSVLEYLK
Sbjct: 727 VSFLEDVKQSVLEYLK 742

BLAST of Cla003028 vs. NCBI nr
Match: gi|590586786|ref|XP_007015799.1| (Sec23/sec24 transport family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 254.2 bits (648), Expect = 1.9e-64
Identity = 123/136 (90.44%), Postives = 132/136 (97.06%), Query Frame = 1

Query: 66  SLHCAVYPVLTSYSTPDIQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADPTLP 125
           SLH A+YPVLTSYSTPD QAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADP+LP
Sbjct: 610 SLHHAIYPVLTSYSTPDKQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADPSLP 669

Query: 126 FPPPQDCLLRTTINELKQERCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGF 185
           FPPPQDCLLR TIN+LKQ+RCITP+L+FI+GGQDDATAFENYLIEEQDVDGSGLTSVMGF
Sbjct: 670 FPPPQDCLLRATINKLKQDRCITPKLLFIQGGQDDATAFENYLIEEQDVDGSGLTSVMGF 729

Query: 186 VSFLEDVKQSVLEYLK 202
           VSFLED+ QSVLEY+K
Sbjct: 730 VSFLEDITQSVLEYIK 745

BLAST of Cla003028 vs. NCBI nr
Match: gi|1009113367|ref|XP_015873083.1| (PREDICTED: protein transport protein sec24 [Ziziphus jujuba])

HSP 1 Score: 252.7 bits (644), Expect = 5.5e-64
Identity = 124/136 (91.18%), Postives = 131/136 (96.32%), Query Frame = 1

Query: 66  SLHCAVYPVLTSYSTPDIQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADPTLP 125
           SLH AVYPVLTSYSTPD QAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADPTLP
Sbjct: 608 SLHRAVYPVLTSYSTPDKQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADPTLP 667

Query: 126 FPPPQDCLLRTTINELKQERCITPRLIFIRGGQDDATAFENYLIEEQDVDGSGLTSVMGF 185
           FPPP DCLLR+TIN+LKQ+RCITP+L+FIRGGQDDAT FENYLIEEQDVDGSGLTSVMGF
Sbjct: 668 FPPPHDCLLRSTINKLKQQRCITPKLMFIRGGQDDATPFENYLIEEQDVDGSGLTSVMGF 727

Query: 186 VSFLEDVKQSVLEYLK 202
           VSFLEDV +SVLEY+K
Sbjct: 728 VSFLEDVTRSVLEYMK 743

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LVF2_CUCSA1.1e-6897.06Uncharacterized protein OS=Cucumis sativus GN=Csa_1G164680 PE=4 SV=1[more]
A0A061GVH3_THECC1.3e-6490.44Sec23/sec24 transport family protein isoform 1 OS=Theobroma cacao GN=TCM_041394 ... [more]
M5W7E9_PRUPE3.8e-6491.18Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001892mg PE=4 SV=1[more]
A0A0B0N5D6_GOSAR5.5e-6388.24Transport protein sec24-1 OS=Gossypium arboreum GN=F383_11793 PE=4 SV=1[more]
A0A0D2QX63_GOSRA5.5e-6388.24Uncharacterized protein OS=Gossypium raimondii GN=B456_004G010100 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449443450|ref|XP_004139490.1|1.6e-6897.06PREDICTED: protein transport protein sec24 [Cucumis sativus][more]
gi|700209838|gb|KGN64934.1|1.6e-6897.06hypothetical protein Csa_1G164680 [Cucumis sativus][more]
gi|659071681|ref|XP_008461390.1|2.8e-6896.32PREDICTED: protein transport protein SEC24 [Cucumis melo][more]
gi|590586786|ref|XP_007015799.1|1.9e-6490.44Sec23/sec24 transport family protein isoform 1 [Theobroma cacao][more]
gi|1009113367|ref|XP_015873083.1|5.5e-6491.18PREDICTED: protein transport protein sec24 [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006886 intracellular protein transport
biological_process GO:0048658 anther wall tapetum development
biological_process GO:0010584 pollen exine formation
cellular_component GO:0030127 COPII vesicle coat
cellular_component GO:0070971 endoplasmic reticulum exit site
molecular_function GO:0008270 zinc ion binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU11203watermelon EST collection version 2.0transcribed_cluster
WMU12337watermelon unigene v2 vs TrEMBLtranscribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003028Cla003028.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU11203WMU11203transcribed_cluster
WMU12337WMU12337transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13803SEC24-RELATED PROTEINcoord: 66..201
score: 8.6
NoneNo IPR availablePANTHERPTHR13803:SF10SUBFAMILY NOT NAMEDcoord: 66..201
score: 8.6