Cla003003 (gene) Watermelon (97103) v1

Overview
NameCla003003
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr4 : 7424959 .. 7425327 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCATGACATACTGATGGAGGTTGCGTTTTTCCCAGAGGAAGCCCCATTGCCACCATACGTCACAGACATCATTGATCACCACGGCTGGCGGAACTTCTGTGCCGGCCCATCTTGGATTCAACCTGCGTTAGTTCGGAGTTTCTACAACGGATGCATTGATGAAGAGGAAGATGTGGTGGTAGTTGAGGGAAGTGAAGTCCCATTCAACGCAAGGGAAATCAATGCTATATTTCAATTGAGGGATGACCTAGACGCAGAGGACAACACGCTCATTGAACCAACAACGCCTGAATACATGCAAGACGCTTTGCGAGTCATGGCCAAGCCAAGGTCAAAATGGGACGTATCACCCACAGGCATCTGA

mRNA sequence

ATGTTCCATGACATACTGATGGAGGTTGCGTTTTTCCCAGAGGAAGCCCCATTGCCACCATACGTCACAGACATCATTGATCACCACGGCTGGCGGAACTTCTGTGCCGGCCCATCTTGGATTCAACCTGCGTTAGTTCGGAGTTTCTACAACGGATGCATTGATGAAGAGGAAGATGTGGTGGTAGTTGAGGGAAGTGAAGTCCCATTCAACGCAAGGGAAATCAATGCTATATTTCAATTGAGGGATGACCTAGACGCAGAGGACAACACGCTCATTGAACCAACAACGCCTGAATACATGCAAGACGCTTTGCGAGTCATGGCCAAGCCAAGGTCAAAATGGGACGTATCACCCACAGGCATCTGA

Coding sequence (CDS)

ATGTTCCATGACATACTGATGGAGGTTGCGTTTTTCCCAGAGGAAGCCCCATTGCCACCATACGTCACAGACATCATTGATCACCACGGCTGGCGGAACTTCTGTGCCGGCCCATCTTGGATTCAACCTGCGTTAGTTCGGAGTTTCTACAACGGATGCATTGATGAAGAGGAAGATGTGGTGGTAGTTGAGGGAAGTGAAGTCCCATTCAACGCAAGGGAAATCAATGCTATATTTCAATTGAGGGATGACCTAGACGCAGAGGACAACACGCTCATTGAACCAACAACGCCTGAATACATGCAAGACGCTTTGCGAGTCATGGCCAAGCCAAGGTCAAAATGGGACGTATCACCCACAGGCATCTGA

Protein sequence

MFHDILMEVAFFPEEAPLPPYVTDIIDHHGWRNFCAGPSWIQPALVRSFYNGCIDEEEDVVVVEGSEVPFNAREINAIFQLRDDLDAEDNTLIEPTTPEYMQDALRVMAKPRSKWDVSPTGI
Homology
[Close]
BLAST of Cla003003 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-10
Identity = 39/103 (37.86%), Postives = 55/103 (53.40%), Query Frame = 1 

Query: 19  PPYVTDIIDHHGWRNFCAGPSWIQPALVRSFYNGCIDEEEDVVVVEGSEVPFNAREINAI 78
           P ++T +I  HGWR FC  PS     LVR FY   +D  ++ V V+  +VPF AR IN+I
Sbjct: 4   PAFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSI 63

Query: 79  FQLRDDLDAEDNTLIEPTTPEYMQDALRVMAKPRSKWDVSPTG 122
           F L + +D E        T E ++  L  +A   + W +SP G
Sbjct: 64  FGLEEVVD-EYVDFASEVTDEQLEVVLAEVAIEGATWQISPQG 105

[Close]
BLAST of Cla003003 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-10
Identity = 39/103 (37.86%), Postives = 55/103 (53.40%), Query Frame = 1 

Query: 19  PPYVTDIIDHHGWRNFCAGPSWIQPALVRSFYNGCIDEEEDVVVVEGSEVPFNAREINAI 78
           P ++T +I  HGWR FC  PS     LVR FY   +D  ++ V V+  +VPF AR IN+I
Sbjct: 4   PAFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSI 63

Query: 79  FQLRDDLDAEDNTLIEPTTPEYMQDALRVMAKPRSKWDVSPTG 122
           F L + +D E        T E ++  L  +A   + W +SP G
Sbjct: 64  FGLEEVVD-EYVDFASEVTDEQLEVVLAEVAIEGATWQISPQG 105

The following BLAST results are available for this feature:
BLAST of Cla003003 vs. TrEMBL
Match NameE-valueIdentityDescription
W9QTD9_9ROSA2.5e-1037.86Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1[more]
BLAST of Cla003003 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703087370|ref|XP_010093253.1|3.6e-1037.86hypothetical protein L484_022412 [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003003Cla003003.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003003Cucurbita moschata (Rifu)cmowmB629
Cla003003Cucurbita moschata (Rifu)cmowmB824
Cla003003Watermelon (Charleston Gray)wcgwmB256
Cla003003Cucurbita pepo (Zucchini)cpewmB089
Cla003003Bottle gourd (USVL1VR-Ls)lsiwmB155
Cla003003Cucumber (Gy14) v2cgybwmB316
Cla003003Silver-seed gourdcarwmB0513
Cla003003Cucumber (Chinese Long) v3cucwmB357
Cla003003Watermelon (97103) v2wmwmbB292
Cla003003Cucurbita maxima (Rimu)cmawmB643
Cla003003Cucurbita maxima (Rimu)cmawmB833