Cla002989 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002989
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr6 : 15135774 .. 15137716 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACATCAATCCATCTGCAGCTGAGGCAACTATTCTATCTCTTCGCCAGTCGCCTCATCCATATCAAACATGCCAGTTCATTCTTGGTAAGTTGATTTGTTGAAGAAATTTTGAATTGTAATAAATTTGAAGGCCTTCTAGTCCAACGAACTATATAACTTTTACGCTAAATATTACAAATCAAATATGGTCTATGGGGCTGCAAAAATACAAGTTTTGAGAAATTTATTCCTCAGCACGATTCAAGAGACTGATCTTCCTTAACTCAAAGTTGGACAAGTCTAGACTTTCCAAACCCATACCCGATTGACCTTTGAATTTACCAAAAGGGACATTTATTACCATTAATAGAAGAGGCACCGTAATCACAAAAAACTGGCAAAAACTTGATATTACTGAAGGGCTAGAATTGAAGATTCCTTTATGAACTTTTGGTCTCCTAGTATTTGCAAGATAGCATGTTGCTGCTACATGGAGAAGCAATAGCTATGGAATATTCAGAAGCATATCTCATTTTATTTATTTATTTTTAAAAACAAACTACTATCATTGAGAAGGGATAGAAGGATACAAGAACATACAAAAATCCTAACCCACAAAAATCCTTTGAAGGAAGGGGTTCCAACTAAGTAAAGTGTTGCCTATAGAGTAATTACAAAAAGTTTTCGAAATCAAAGCCCGAAGAAACATGAACACTTTAGTTTGGCTAGCGTGTTAGTATCCGACGCATGTTGGACATTTGAACATTCCGACACTTGTTGGACACATATTGGACACTTGTTAGTGCAACAAATGTGTTAGACATGCATAGAATACTAGTTTAGTAGACTAAAAAGATACATATGATTAATAATAACTTTTGGATGCAAGCTAAATCTTTTAAGCATATAAATGCATCAACCCATTTGCTTTGAATTTTATTTTGGTATGAAAATGATATATATTTTTTAAAAATGTATATTTTAATAAACGTGTCCTTATCGTGTCGTATCTTAGATATTTTAAGTATGGTGTGTTGCTGTATTTGTGTTGTGTTGTATGCATGTCTCGTATCCGTATTTGTGCTTCTTAGTCGAAGCCCAAAGAGAAACATGGAACCTCACTGAGGACCAAACCTCACTAAGGTCCCCTCTCCACACCTCAAAACACTGCCATTTCTCTTCACCCAAAGATACCATACCAAAGCACACTCCCCAACAAACCACAAAAAACAACATTTTTCTCTAAAAGGCGAATGGTGGACGAACCCTTCGATTGATGTTTTAACATCTCTTTGACGGGCAAGAAGAAAACCAACTTCCTAAAGAAGTGGTTCCACACAGACCTCGCAAACTCACTACCCCAAAGAAGGTGATCGAGGTTTTCCTCTAGCTTCCGACAAAGTAAATGTGTGGAGTATTAGAGATGCAATTGATATTCTAAAGTAAATTGTAGTGTTGATTATTTTTCTTAATCAACAAGAAGATTTCCCTCTTTTAAAGGATAATTTTTTTCATAAGAAAATATATTTGATTTGACCACGTTTGTATGCTTGCTCTATTTATGATCTTCCTCCCTCCCTCTATTTCTTTTGGAGTCCGTGCATGTTCTTCAAAGCACTATGAAAAATTATAAATTCACGAACTTTTTGCTTTCCTATTATGGTGCAAAAGATGATCTCTCAGGTTTTATTGCTGATCTTTTGCTGTTGATGTCTTATCCAGAAAATTCTCAGGTGGCTAATGCACGATTTCAAGCTGCTGCTGCAATTCGAGATGCTGCTATCAGAGAGTGGAGTTTTCTTACTGCTGATGTCAAGAGAACTTTAATTAGGTTATTTTTACTTCTGTGAAATACTATTCTTTTTGTTCTCTCTTCTCAGTGCAATATGTTTTTAAAACTGCTAGGCGCACTGGAAGGACAGAAGGCACTGTTAATTTACTTGTGCTATTTTGGCAATAG

mRNA sequence

ATGCACATCAATCCATCTGCAGCTGAGGCAACTATTCTATCTCTTCGCCAGTCGCCTCATCCATATCAAACATGCCAGTTCATTCTTGAAAATTCTCAGGTGGCTAATGCACGATTTCAAGCTGCTGCTGCAATTCGAGATGCTGCTATCAGAGAGTGGAGTTTTCTTACTGCTGATGTCAAGAGAACTTTAATTAGGCGCACTGGAAGGACAGAAGGCACTGTTAATTTACTTGTGCTATTTTGGCAATAG

Coding sequence (CDS)

ATGCACATCAATCCATCTGCAGCTGAGGCAACTATTCTATCTCTTCGCCAGTCGCCTCATCCATATCAAACATGCCAGTTCATTCTTGAAAATTCTCAGGTGGCTAATGCACGATTTCAAGCTGCTGCTGCAATTCGAGATGCTGCTATCAGAGAGTGGAGTTTTCTTACTGCTGATGTCAAGAGAACTTTAATTAGGCGCACTGGAAGGACAGAAGGCACTGTTAATTTACTTGTGCTATTTTGGCAATAG

Protein sequence

MHINPSAAEATILSLRQSPHPYQTCQFILENSQVANARFQAAAAIRDAAIREWSFLTADVKRTLIRRTGRTEGTVNLLVLFWQ

Homology

[Close]

BLAST of Cla002989 vs. TrEMBL
Match: A0A0A0LY17_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G680070 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-26
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 1


Query: 1  MHINPSAAEATILSLRQSPHPYQTCQFILENSQVANARFQAAAAIRDAAIREWSFLTADV 60
          MHINPSAAEATILSLRQSPHPY TCQFILENSQVANARFQAAAAIRDAAIREWSFLTADV
Sbjct: 32 MHINPSAAEATILSLRQSPHPYHTCQFILENSQVANARFQAAAAIRDAAIREWSFLTADV 91

Query: 61 KRTLI 66
          KR+LI
Sbjct: 92 KRSLI 96

[Close]

BLAST of Cla002989 vs. TrEMBL
Match: B9S7K9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0609300 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.0e-23
Identity = 59/87 (67.82%), Postives = 69/87 (79.31%), Query Frame = 1


Query: 1   MHINPSAAEATILSLRQSPHPYQTCQFILENSQVANARFQAAAAIRDAAIREWSFLTADV 60
           MH+NP+AAEATI+SL QSPHPY+ CQFILENSQVANARFQAAAAIRDAAIREWSFLT D 
Sbjct: 30  MHMNPAAAEATIMSLNQSPHPYKACQFILENSQVANARFQAAAAIRDAAIREWSFLTGDD 89

Query: 61  KRTLI--------RRTGRTEGTVNLLV 80
           K++LI        +  G ++G V + V
Sbjct: 90  KKSLISFCLCYVMQHAGSSDGYVQVKV 116

[Close]

BLAST of Cla002989 vs. TrEMBL
Match: A0A067DSL6_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0010131mg PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.3e-22
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1  MHINPSAAEATILSLRQSPHPYQTCQFILENSQVANARFQAAAAIRDAAIREWSFLTADV 60
          MH+NP+AAEATIL L QSP PY+ CQFILENSQVANARFQAAAAIRDAA+REWSFLTAD 
Sbjct: 1  MHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADE 60

Query: 61 KRTLI 66
          K++LI
Sbjct: 61 KKSLI 65

[Close]

BLAST of Cla002989 vs. TrEMBL
Match: V4T6L7_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100185682mg PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.3e-22
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1   MHINPSAAEATILSLRQSPHPYQTCQFILENSQVANARFQAAAAIRDAAIREWSFLTADV 60
           MH+NP+AAEATIL L QSP PY+ CQFILENSQVANARFQAAAAIRDAA+REWSFLTAD 
Sbjct: 44  MHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADE 103

Query: 61  KRTLI 66
           K++LI
Sbjct: 104 KKSLI 108

[Close]

BLAST of Cla002989 vs. TrEMBL
Match: A0A067DSL0_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0010131mg PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.3e-22
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1   MHINPSAAEATILSLRQSPHPYQTCQFILENSQVANARFQAAAAIRDAAIREWSFLTADV 60
           MH+NP+AAEATIL L QSP PY+ CQFILENSQVANARFQAAAAIRDAA+REWSFLTAD 
Sbjct: 44  MHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADE 103

Query: 61  KRTLI 66
           K++LI
Sbjct: 104 KKSLI 108

[Close]

BLAST of Cla002989 vs. NCBI nr
Match: gi|778664303|ref|XP_011660266.1| (PREDICTED: exportin-4 isoform X1 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 1


Query: 1  MHINPSAAEATILSLRQSPHPYQTCQFILENSQVANARFQAAAAIRDAAIREWSFLTADV 60
          MHINPSAAEATILSLRQSPHPY TCQFILENSQVANARFQAAAAIRDAAIREWSFLTADV
Sbjct: 32 MHINPSAAEATILSLRQSPHPYHTCQFILENSQVANARFQAAAAIRDAAIREWSFLTADV 91

Query: 61 KRTLI 66
          KR+LI
Sbjct: 92 KRSLI 96

[Close]

BLAST of Cla002989 vs. NCBI nr
Match: gi|700211664|gb|KGN66760.1| (hypothetical protein Csa_1G680070 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 1


Query: 1  MHINPSAAEATILSLRQSPHPYQTCQFILENSQVANARFQAAAAIRDAAIREWSFLTADV 60
          MHINPSAAEATILSLRQSPHPY TCQFILENSQVANARFQAAAAIRDAAIREWSFLTADV
Sbjct: 32 MHINPSAAEATILSLRQSPHPYHTCQFILENSQVANARFQAAAAIRDAAIREWSFLTADV 91

Query: 61 KRTLI 66
          KR+LI
Sbjct: 92 KRSLI 96

[Close]

BLAST of Cla002989 vs. NCBI nr
Match: gi|659086148|ref|XP_008443788.1| (PREDICTED: exportin-4 isoform X1 [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 1


Query: 1  MHINPSAAEATILSLRQSPHPYQTCQFILENSQVANARFQAAAAIRDAAIREWSFLTADV 60
          MHINPSAAEATILSLRQSPHPY TCQFILENSQVANARFQAAAAIRDAAIREWSFLTADV
Sbjct: 32 MHINPSAAEATILSLRQSPHPYHTCQFILENSQVANARFQAAAAIRDAAIREWSFLTADV 91

Query: 61 KRTLI 66
          KR+LI
Sbjct: 92 KRSLI 96

[Close]

BLAST of Cla002989 vs. NCBI nr
Match: gi|223538782|gb|EEF40382.1| (protein with unknown function [Ricinus communis])

HSP 1 Score: 115.5 bits (288), Expect = 4.3e-23
Identity = 59/87 (67.82%), Postives = 69/87 (79.31%), Query Frame = 1


Query: 1   MHINPSAAEATILSLRQSPHPYQTCQFILENSQVANARFQAAAAIRDAAIREWSFLTADV 60
           MH+NP+AAEATI+SL QSPHPY+ CQFILENSQVANARFQAAAAIRDAAIREWSFLT D 
Sbjct: 30  MHMNPAAAEATIMSLNQSPHPYKACQFILENSQVANARFQAAAAIRDAAIREWSFLTGDD 89

Query: 61  KRTLI--------RRTGRTEGTVNLLV 80
           K++LI        +  G ++G V + V
Sbjct: 90  KKSLISFCLCYVMQHAGSSDGYVQVKV 116

[Close]

BLAST of Cla002989 vs. NCBI nr
Match: gi|1000959186|ref|XP_015576547.1| (PREDICTED: LOW QUALITY PROTEIN: exportin-4 [Ricinus communis])

HSP 1 Score: 115.5 bits (288), Expect = 4.3e-23
Identity = 59/87 (67.82%), Postives = 69/87 (79.31%), Query Frame = 1


Query: 1   MHINPSAAEATILSLRQSPHPYQTCQFILENSQVANARFQAAAAIRDAAIREWSFLTADV 60
           MH+NP+AAEATI+SL QSPHPY+ CQFILENSQVANARFQAAAAIRDAAIREWSFLT D 
Sbjct: 30  MHMNPAAAEATIMSLNQSPHPYKACQFILENSQVANARFQAAAAIRDAAIREWSFLTGDD 89

Query: 61  KRTLI--------RRTGRTEGTVNLLV 80
           K++LI        +  G ++G V + V
Sbjct: 90  KKSLISFCLCYVMQHAGSSDGYVQVKV 116

The following BLAST results are available for this feature:

BLAST of Cla002989 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY17_CUCSA	1.0e-26	96.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G680070 PE=4 SV=1	[more]
B9S7K9_RICCO	3.0e-23	67.82	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0609300 PE=4 SV=1	[more]
A0A067DSL6_CITSI	4.3e-22	83.08	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0010131mg PE=4 ...	[more]
V4T6L7_9ROSI	4.3e-22	83.08	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100185682mg PE...	[more]
A0A067DSL0_CITSI	4.3e-22	83.08	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0010131mg PE=4 ...	[more]

BLAST of Cla002989 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664303\|ref\|XP_011660266.1\|	1.4e-26	96.92	PREDICTED: exportin-4 isoform X1 [Cucumis sativus]	[more]
gi\|700211664\|gb\|KGN66760.1\|	1.4e-26	96.92	hypothetical protein Csa_1G680070 [Cucumis sativus]	[more]
gi\|659086148\|ref\|XP_008443788.1\|	1.4e-26	96.92	PREDICTED: exportin-4 isoform X1 [Cucumis melo]	[more]
gi\|223538782\|gb\|EEF40382.1\|	4.3e-23	67.82	protein with unknown function [Ricinus communis]	[more]
gi\|1000959186\|ref\|XP_015576547.1\|	4.3e-23	67.82	PREDICTED: LOW QUALITY PROTEIN: exportin-4 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006611	protein export from nucleus
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0005488	binding
molecular_function	GO:0005049	nuclear export signal receptor activity
molecular_function	GO:0008536	Ran GTPase binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU65196	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002989	Cla002989.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU65196	WMU65196	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016024	Armadillo-type fold	unknown	SSF48371	ARM repeat	coord: 7..64 score: 5.7
None	No IPR available	PANTHER	PTHR12596	EXPORTIN 4,7-RELATED	coord: 1..66 score: 2.2
None	No IPR available	PANTHER	PTHR12596:SF1	EXPORTIN-4	coord: 1..66 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002989	Cla97C06G119160	Watermelon (97103) v2	wmwmbB406
Cla002989	ClCG06G009450	Watermelon (Charleston Gray)	wcgwmB344
Cla002989	Lsi06G007760	Bottle gourd (USVL1VR-Ls)	lsiwmB419

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002989	Cucumber (Gy14) v1	cgywmB535