Cla002985 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002985
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr6 : 15058962 .. 15059389 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACAGTTCATACCGATTCGGCTTACAAGATTGTCCCAAGAAAGGACTCCAATAGGGTTGAATCTGAATTACATCAAGTGTCACGGCACAATGAAGGAACATTGATTTCTTTAGAGAACCCAGATCATTTTAGTAAACCAAGCACTCAGGTAACTTTATTTTATCTTGTAACTTCCACACACAGAAAAGGAAAAAAAAAAAAAAAAGAACAAAATAAATTAAACAATTAAAAAAGAATCATTGATAAACATTGCTAAGTGAGGGTAAACGACAAGGAATGCAGGATGAACATGGTGCTTTAAGAAGTGTATGGAGAAGTTTGCATAATAAGATGGAACAAATTGAAGATGCTGATACCATAGTGAACTATGGGTTGGTCGTTATGCTTCCATTCTTAGGGATCTCCATTTGGCTATGGAGATGA

mRNA sequence

ATGGAAACAGTTCATACCGATTCGGCTTACAAGATTGTCCCAAGAAAGGACTCCAATAGGGTTGAATCTGAATTACATCAAGTGTCACGGCACAATGAAGGAACATTGATTTCTTTAGAGAACCCAGATCATTTTAGTAAACCAAGCACTCAGGATGAACATGGTGCTTTAAGAAGTGTATGGAGAAGTTTGCATAATAAGATGGAACAAATTGAAGATGCTGATACCATAGTGAACTATGGGTTGGTCGTTATGCTTCCATTCTTAGGGATCTCCATTTGGCTATGGAGATGA

Coding sequence (CDS)

ATGGAAACAGTTCATACCGATTCGGCTTACAAGATTGTCCCAAGAAAGGACTCCAATAGGGTTGAATCTGAATTACATCAAGTGTCACGGCACAATGAAGGAACATTGATTTCTTTAGAGAACCCAGATCATTTTAGTAAACCAAGCACTCAGGATGAACATGGTGCTTTAAGAAGTGTATGGAGAAGTTTGCATAATAAGATGGAACAAATTGAAGATGCTGATACCATAGTGAACTATGGGTTGGTCGTTATGCTTCCATTCTTAGGGATCTCCATTTGGCTATGGAGATGA

Protein sequence

METVHTDSAYKIVPRKDSNRVESELHQVSRHNEGTLISLENPDHFSKPSTQDEHGALRSVWRSLHNKMEQIEDADTIVNYGLVVMLPFLGISIWLWR

Homology

[Close]

BLAST of Cla002985 vs. TrEMBL
Match: A0A0A0M0Z0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690290 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.5e-39
Identity = 80/97 (82.47%), Postives = 89/97 (91.75%), Query Frame = 1


Query: 1   METVHTDSAYKIVPRKDSNRVESELHQVSRHNEGTLISLENPDHFSKPSTQDEHGALRSV 60
           METVHTDSAYKIV RKD NR E ELHQVS+HNE TLIS +NPDHFS+PST+DEH ALRS+
Sbjct: 303 METVHTDSAYKIVSRKDYNRGEPELHQVSQHNERTLISSDNPDHFSEPSTRDEHEALRSI 362

Query: 61  WRSLHNKMEQIEDADTIVNYGLVVMLPFLGISIWLWR 98
           WRSLHNKME+IEDADT+VNYGLV+MLPFLGIS+WL R
Sbjct: 363 WRSLHNKMERIEDADTLVNYGLVIMLPFLGISMWLSR 399

[Close]

BLAST of Cla002985 vs. TrEMBL
Match: A0A061F247_THECC (Peptidase C13 family OS=Theobroma cacao GN=TCM_026257 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14
Identity = 41/100 (41.00%), Postives = 63/100 (63.00%), Query Frame = 1


Query: 1   METVHTDSAYKIVPRKDSNRVESEL---HQVSRHNEGTLISLENPDHFSKPSTQDEHGAL 60
           MET+HTD+AYK + RKDS R ++++     V  H   TLI++ + D       +D+ GA 
Sbjct: 303 METIHTDAAYKALSRKDSGRFKAQMSLDQSVHHHERRTLINVNDQDEILNTKAEDQQGAS 362

Query: 61  RSVWRSLHNKMEQIEDADTIVNYGLVVMLPFLGISIWLWR 98
              + S + K+ + E+ D++VNYGLV MLP LG+S WL++
Sbjct: 363 TCPFTSFYEKLRKGENVDSLVNYGLVAMLPLLGVSSWLFQ 402

[Close]

BLAST of Cla002985 vs. TrEMBL
Match: A0A0B0PXJ2_GOSAR (Putative GPI-anchor transamidase OS=Gossypium arboreum GN=F383_11697 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = 1


Query: 1   METVHTDSAYKIVPRKDSNRVESEL------HQVSRHNEGTLISLENPDHFSKPSTQDEH 60
           MET+HTD+AYK + R++S R E E+      H + R     LI + + D     + + E 
Sbjct: 303 METIHTDAAYKALSRRNSGRFEDEMSLDQSVHHIERR---MLIKVNDGDEIHDINPEGEE 362

Query: 61  GALRSVWRSLHNKMEQIEDADTIVNYGLVVMLPFLGISIWL 96
           GA +  W +  N  ++ E+ D++VNYGLV M+P L IS WL
Sbjct: 363 GACKCPWSTFRNTFQKAENVDSLVNYGLVAMIPLLVISTWL 400

[Close]

BLAST of Cla002985 vs. TrEMBL
Match: A0A0D2TMU3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G279800 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-11
Identity = 43/106 (40.57%), Postives = 60/106 (56.60%), Query Frame = 1


Query: 1   METVHTDSAYKIVPRKDSNRVESEL------HQVSRH-----NEGTLISLENPDHFSKPS 60
           MET+HTD+AYK + R++S R E E+      H + R      N+G  I   NP+      
Sbjct: 303 METIHTDAAYKALSRRNSGRFEDEMSLDQSVHHIERRMLIKVNDGYEIHDINPELL---- 362

Query: 61  TQDEHGALRSVWRSLHNKMEQIEDADTIVNYGLVVMLPFLGISIWL 96
            Q E GA +  W +  NK ++ E+ D++VNYGLV M+P L IS WL
Sbjct: 363 -QGEEGASKCPWSTFRNKFQKAENVDSLVNYGLVAMIPLLVISTWL 403

[Close]

BLAST of Cla002985 vs. TrEMBL
Match: A0A0D2SSB8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G279800 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.1e-11
Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = 1


Query: 1   METVHTDSAYKIVPRKDSNRVESEL------HQVSRHNEGTLISLENPDHFSKPSTQDEH 60
           MET+HTD+AYK + R++S R E E+      H + R     LI + +       + + E 
Sbjct: 219 METIHTDAAYKALSRRNSGRFEDEMSLDQSVHHIERR---MLIKVNDGYEIHDINPEGEE 278

Query: 61  GALRSVWRSLHNKMEQIEDADTIVNYGLVVMLPFLGISIWL 96
           GA +  W +  NK ++ E+ D++VNYGLV M+P L IS WL
Sbjct: 279 GASKCPWSTFRNKFQKAENVDSLVNYGLVAMIPLLVISTWL 316

[Close]

BLAST of Cla002985 vs. NCBI nr
Match: gi|449449547|ref|XP_004142526.1| (PREDICTED: GPI-anchor transamidase [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 5.0e-39
Identity = 80/97 (82.47%), Postives = 89/97 (91.75%), Query Frame = 1


Query: 1   METVHTDSAYKIVPRKDSNRVESELHQVSRHNEGTLISLENPDHFSKPSTQDEHGALRSV 60
           METVHTDSAYKIV RKD NR E ELHQVS+HNE TLIS +NPDHFS+PST+DEH ALRS+
Sbjct: 303 METVHTDSAYKIVSRKDYNRGEPELHQVSQHNERTLISSDNPDHFSEPSTRDEHEALRSI 362

Query: 61  WRSLHNKMEQIEDADTIVNYGLVVMLPFLGISIWLWR 98
           WRSLHNKME+IEDADT+VNYGLV+MLPFLGIS+WL R
Sbjct: 363 WRSLHNKMERIEDADTLVNYGLVIMLPFLGISMWLSR 399

[Close]

BLAST of Cla002985 vs. NCBI nr
Match: gi|659125498|ref|XP_008462713.1| (PREDICTED: GPI-anchor transamidase isoform X2 [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 5.5e-38
Identity = 80/97 (82.47%), Postives = 88/97 (90.72%), Query Frame = 1


Query: 1   METVHTDSAYKIVPRKDSNRVESELHQVSRHNEGTLISLENPDHFSKPSTQDEHGALRSV 60
           METVHTDSAYKIV RKD NR E ELHQVS+HNE TLIS +NPDHFS+PST+DE+GALRS+
Sbjct: 247 METVHTDSAYKIVSRKDYNRGEPELHQVSQHNERTLISSDNPDHFSEPSTRDEYGALRSI 306

Query: 61  WRSLHNKMEQIEDADTIVNYGLVVMLPFLGISIWLWR 98
           WRSLHNKMEQIEDADT VNYGLV+MLPFLGIS+ L R
Sbjct: 307 WRSLHNKMEQIEDADTFVNYGLVIMLPFLGISMLLSR 343

[Close]

BLAST of Cla002985 vs. NCBI nr
Match: gi|659125496|ref|XP_008462711.1| (PREDICTED: GPI-anchor transamidase isoform X1 [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 5.5e-38
Identity = 80/97 (82.47%), Postives = 88/97 (90.72%), Query Frame = 1


Query: 1   METVHTDSAYKIVPRKDSNRVESELHQVSRHNEGTLISLENPDHFSKPSTQDEHGALRSV 60
           METVHTDSAYKIV RKD NR E ELHQVS+HNE TLIS +NPDHFS+PST+DE+GALRS+
Sbjct: 302 METVHTDSAYKIVSRKDYNRGEPELHQVSQHNERTLISSDNPDHFSEPSTRDEYGALRSI 361

Query: 61  WRSLHNKMEQIEDADTIVNYGLVVMLPFLGISIWLWR 98
           WRSLHNKMEQIEDADT VNYGLV+MLPFLGIS+ L R
Sbjct: 362 WRSLHNKMEQIEDADTFVNYGLVIMLPFLGISMLLSR 398

[Close]

BLAST of Cla002985 vs. NCBI nr
Match: gi|590642342|ref|XP_007030491.1| (Peptidase C13 family [Theobroma cacao])

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-14
Identity = 41/100 (41.00%), Postives = 63/100 (63.00%), Query Frame = 1


Query: 1   METVHTDSAYKIVPRKDSNRVESEL---HQVSRHNEGTLISLENPDHFSKPSTQDEHGAL 60
           MET+HTD+AYK + RKDS R ++++     V  H   TLI++ + D       +D+ GA 
Sbjct: 303 METIHTDAAYKALSRKDSGRFKAQMSLDQSVHHHERRTLINVNDQDEILNTKAEDQQGAS 362

Query: 61  RSVWRSLHNKMEQIEDADTIVNYGLVVMLPFLGISIWLWR 98
              + S + K+ + E+ D++VNYGLV MLP LG+S WL++
Sbjct: 363 TCPFTSFYEKLRKGENVDSLVNYGLVAMLPLLGVSSWLFQ 402

[Close]

BLAST of Cla002985 vs. NCBI nr
Match: gi|470132402|ref|XP_004302071.1| (PREDICTED: putative GPI-anchor transamidase [Fragaria vesca subsp. vesca])

HSP 1 Score: 82.0 bits (201), Expect = 6.2e-13
Identity = 42/97 (43.30%), Postives = 57/97 (58.76%), Query Frame = 1


Query: 1   METVHTDSAYKIVPRKDSNRVE--SELHQVSRHNEGTLISLENPDHFSKPSTQDEHGALR 60
           MET+HTDSAYK + RK   R E  +   Q +  +E TL      D FS    +DE  A R
Sbjct: 305 METIHTDSAYKALSRKSCRRAEINTPSDQSADGDERTLADSNGQDQFSDLKKEDEQSAFR 364

Query: 61  SVWRSLHNKMEQIEDADTIVNYGLVVMLPFLGISIWL 96
            +W + ++K+ +IEDAD+ V YGL+ MLP L +  WL
Sbjct: 365 HLWNTFNDKVRKIEDADSFVQYGLLAMLPLLLLPTWL 401

The following BLAST results are available for this feature:

BLAST of Cla002985 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0Z0_CUCSA	3.5e-39	82.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690290 PE=4 SV=1	[more]
A0A061F247_THECC	1.3e-14	41.00	Peptidase C13 family OS=Theobroma cacao GN=TCM_026257 PE=4 SV=1	[more]
A0A0B0PXJ2_GOSAR	1.1e-11	38.61	Putative GPI-anchor transamidase OS=Gossypium arboreum GN=F383_11697 PE=4 SV=1	[more]
A0A0D2TMU3_GOSRA	1.4e-11	40.57	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G279800 PE=4 SV=1	[more]
A0A0D2SSB8_GOSRA	3.1e-11	38.61	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G279800 PE=4 SV=1	[more]

BLAST of Cla002985 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449547\|ref\|XP_004142526.1\|	5.0e-39	82.47	PREDICTED: GPI-anchor transamidase [Cucumis sativus]	[more]
gi\|659125498\|ref\|XP_008462713.1\|	5.5e-38	82.47	PREDICTED: GPI-anchor transamidase isoform X2 [Cucumis melo]	[more]
gi\|659125496\|ref\|XP_008462711.1\|	5.5e-38	82.47	PREDICTED: GPI-anchor transamidase isoform X1 [Cucumis melo]	[more]
gi\|590642342\|ref\|XP_007030491.1\|	1.9e-14	41.00	Peptidase C13 family [Theobroma cacao]	[more]
gi\|470132402\|ref\|XP_004302071.1\|	6.2e-13	43.30	PREDICTED: putative GPI-anchor transamidase [Fragaria vesca subsp. vesca]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016255	attachment of GPI anchor to protein
biological_process	GO:0006508	proteolysis
biological_process	GO:0046520	sphingoid biosynthetic process
biological_process	GO:0016126	sterol biosynthetic process
biological_process	GO:0034394	protein localization to cell surface
cellular_component	GO:0042765	GPI-anchor transamidase complex
molecular_function	GO:0003923	GPI-anchor transamidase activity
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0016740	transferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU05109	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU49876	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002985	Cla002985.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU05109	WMU05109	transcribed_cluster
WMU49876	WMU49876	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002985	Cla97C06G119140	Watermelon (97103) v2	wmwmbB406
Cla002985	Csa1G690290	Cucumber (Chinese Long) v2	cuwmB091
Cla002985	MELO3C024666	Melon (DHL92) v3.5.1	mewmB292
Cla002985	ClCG06G009440	Watermelon (Charleston Gray)	wcgwmB344
Cla002985	CSPI01G33600	Wild cucumber (PI 183967)	cpiwmB096
Cla002985	Cucsa.291700	Cucumber (Gy14) v1	cgywmB535
Cla002985	CmaCh10G010100	Cucurbita maxima (Rimu)	cmawmB073
Cla002985	CmoCh10G010650	Cucurbita moschata (Rifu)	cmowmB065
Cla002985	Lsi06G007980	Bottle gourd (USVL1VR-Ls)	lsiwmB417
Cla002985	CsGy1G032250	Cucumber (Gy14) v2	cgybwmB086
Cla002985	MELO3C024666.2	Melon (DHL92) v3.6.1	medwmB287
Cla002985	CsaV3_1G045570	Cucumber (Chinese Long) v3	cucwmB100
Cla002985	Bhi02G001028	Wax gourd	wgowmB690

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002985	Bottle gourd (USVL1VR-Ls)	lsiwmB419