Cla002980 (gene) Watermelon (97103) v1

Overview
NameCla002980
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 14971657 .. 14972403 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGACGCCCTTACAACCATCGCTAAACCGGGGTCAAAGTGGAACACTTCCCCAAAGGGCATTCATACATTGGCGTCAACTTGCTTGATCACCGAAGCCAACCTGTGGCTTTACTTCATCAAGCGGTCGCTACTCCCCACAACGCATGATGCCTCAATATCAAGGGACAGTGCCATGGTCATTTACTATATCATGCGGGAAATTCGGCTAGACGTGGGACGCATCATTGCCCCACAGATTCGGGGGTTGTTTTTCAAGCCAAGGGGTCATCTATTCTTCCTCTTTCTTGTGACAAGACTGTGCGCCAATGCAGAATTCATGGAGGATGTGCCAGTCAGAGCAGTAAATGGGGTCCTTTCAGCCCAAAGTCTAAGACAGATATTAAAGGACTCTCCGCATTTGCTCGAGGCGGCCAACTCAAAGAAGAGGTCGACCAAGTCACAAGAACCATTATCCCTCCAACCTCCTCAACCCAAGAAGAGGAAACTTGTCAAGAAGCATTTTGAGTTGAAGGCGTCGAGTTCACAACCTAGTGAAGCCGAAGAAGTTGTTCAACTCAACGCCAACACACAAGCCTTGACCGTTTATACTCCTCCCATCAACCCAATCACTGAGGAGCCTCTTCACCATCAACTTCCCCTTCCTCTTCCCTTTCCTCTTCCCCTAAAATCCAAAAAGAGTCACTTCCTGTACCTACCACCCAACACGGCCTCCCATCGCCTCTGCTTCCTATCACAGACTTAA

mRNA sequence

ATGAATGACGCCCTTACAACCATCGCTAAACCGGGGTCAAAGTGGAACACTTCCCCAAAGGGCATTCATACATTGGCGTCAACTTGCTTGATCACCGAAGCCAACCTGTGGCTTTACTTCATCAAGCGGTCGCTACTCCCCACAACGCATGATGCCTCAATATCAAGGGACAGTGCCATGGTCATTTACTATATCATGCGGGAAATTCGGCTAGACGTGGGACGCATCATTGCCCCACAGATTCGGGGGTTGTTTTTCAAGCCAAGGGGTCATCTATTCTTCCTCTTTCTTGTGACAAGACTGTGCGCCAATGCAGAATTCATGGAGGATGTGCCAGTCAGAGCAGTAAATGGGGTCCTTTCAGCCCAAAGTCTAAGACAGATATTAAAGGACTCTCCGCATTTGCTCGAGGCGGCCAACTCAAAGAAGAGGTCGACCAAGTCACAAGAACCATTATCCCTCCAACCTCCTCAACCCAAGAAGAGGAAACTTGTCAAGAAGCATTTTGAGTTGAAGGCGTCGAGTTCACAACCTAGTGAAGCCGAAGAAGTTGTTCAACTCAACGCCAACACACAAGCCTTGACCGTTTATACTCCTCCCATCAACCCAATCACTGAGGAGCCTCTTCACCATCAACTTCCCCTTCCTCTTCCCTTTCCTCTTCCCCTAAAATCCAAAAAGAGTCACTTCCTGTACCTACCACCCAACACGGCCTCCCATCGCCTCTGCTTCCTATCACAGACTTAA

Coding sequence (CDS)

ATGAATGACGCCCTTACAACCATCGCTAAACCGGGGTCAAAGTGGAACACTTCCCCAAAGGGCATTCATACATTGGCGTCAACTTGCTTGATCACCGAAGCCAACCTGTGGCTTTACTTCATCAAGCGGTCGCTACTCCCCACAACGCATGATGCCTCAATATCAAGGGACAGTGCCATGGTCATTTACTATATCATGCGGGAAATTCGGCTAGACGTGGGACGCATCATTGCCCCACAGATTCGGGGGTTGTTTTTCAAGCCAAGGGGTCATCTATTCTTCCTCTTTCTTGTGACAAGACTGTGCGCCAATGCAGAATTCATGGAGGATGTGCCAGTCAGAGCAGTAAATGGGGTCCTTTCAGCCCAAAGTCTAAGACAGATATTAAAGGACTCTCCGCATTTGCTCGAGGCGGCCAACTCAAAGAAGAGGTCGACCAAGTCACAAGAACCATTATCCCTCCAACCTCCTCAACCCAAGAAGAGGAAACTTGTCAAGAAGCATTTTGAGTTGAAGGCGTCGAGTTCACAACCTAGTGAAGCCGAAGAAGTTGTTCAACTCAACGCCAACACACAAGCCTTGACCGTTTATACTCCTCCCATCAACCCAATCACTGAGGAGCCTCTTCACCATCAACTTCCCCTTCCTCTTCCCTTTCCTCTTCCCCTAAAATCCAAAAAGAGTCACTTCCTGTACCTACCACCCAACACGGCCTCCCATCGCCTCTGCTTCCTATCACAGACTTAA

Protein sequence

MNDALTTIAKPGSKWNTSPKGIHTLASTCLITEANLWLYFIKRSLLPTTHDASISRDSAMVIYYIMREIRLDVGRIIAPQIRGLFFKPRGHLFFLFLVTRLCANAEFMEDVPVRAVNGVLSAQSLRQILKDSPHLLEAANSKKRSTKSQEPLSLQPPQPKKRKLVKKHFELKASSSQPSEAEEVVQLNANTQALTVYTPPINPITEEPLHHQLPLPLPFPLPLKSKKSHFLYLPPNTASHRLCFLSQT
Homology
[Close]
BLAST of Cla002980 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 37/102 (36.27%), Postives = 60/102 (58.82%), Query Frame = 1 

Query: 1   MNDALTTIAKPGSKWNTSPKGIHTLASTCLITEANLWLYFIKRSLLPTTHDASISRDSAM 60
           + + L TIA  G++W  S KG +T     L   A +W +F+   LL +TH  +ISR+ A+
Sbjct: 157 LKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRNRAI 216

Query: 61  VIYYIMREIRLDVGRIIAPQIRGLFFKPRGHLFFLFLVTRLC 103
           ++Y ++    ++VGR+I  QIR    K +G L+F  L++ LC
Sbjct: 217 LLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELC 258

[Close]
BLAST of Cla002980 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-07
Identity = 45/164 (27.44%), Postives = 84/164 (51.22%), Query Frame = 1 

Query: 36  LWLYFIKRSLLPTTHDASISRDSAMVIYYIMREIRLDVGRIIAPQIRGLFFKPRGHLFFL 95
           +WL  IK+ ++PT H ++IS +  M++Y IM++I +++G+II+  I  L   PRG   F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 96  FLVTRLCANAEFM-EDVP-VRAVNGVLSAQSLRQILKDSPHLLEAANSKKRSTKSQEPLS 155
           +L+ +LC  A  M E +P V   +G+    +L +I+      +    +K +  K++E   
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRII-----AIHKNKAKIKCLKTKEGCK 147

Query: 156 L--------------QPPQPKKRKLVKKHFELKASSSQPSEAEE 184
           +              +   P+KRK   K  +L +  ++ S+ E+
Sbjct: 148 VVKEIDDDDVEEEDKKDNIPQKRKRQDKEDDLGSKKAKSSKIED 186

[Close]
BLAST of Cla002980 vs. TrEMBL
Match: A0A0A0LAY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G511970 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.0e-07
Identity = 35/110 (31.82%), Postives = 58/110 (52.73%), Query Frame = 1 

Query: 1   MNDALTTIAKPGSKWNTSPKGIHTLASTCLI-----TEANLWLYFIKRSLLPTTHDASIS 60
           +++AL  +    +KW+    G + +    +      T+A++WL F+K+ ++ T  D++IS
Sbjct: 56  VDEALKKVVCSKTKWDKMSIGTYQIRMGLIFLHNPNTDASVWLVFVKKKIMSTRPDSTIS 115

Query: 61  RDSAMVIYYIMREIRLDVGRIIAPQIRGLFFKPRGHLFFLFLVTRLCANA 106
            D  M+IY IM EI ++VG II   I      P     FL L+ +LC  A
Sbjct: 116 MDKIMLIYCIMEEIPVNVGEIICKHILAWIKHPHDGRPFLHLIEKLCLKA 165

[Close]
BLAST of Cla002980 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-08
Identity = 37/102 (36.27%), Postives = 60/102 (58.82%), Query Frame = 1 

Query: 1   MNDALTTIAKPGSKWNTSPKGIHTLASTCLITEANLWLYFIKRSLLPTTHDASISRDSAM 60
           + + L TIA  G++W  S KG +T     L   A +W +F+   LL +TH  +ISR+ A+
Sbjct: 157 LKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRNRAI 216

Query: 61  VIYYIMREIRLDVGRIIAPQIRGLFFKPRGHLFFLFLVTRLC 103
           ++Y ++    ++VGR+I  QIR    K +G L+F  L++ LC
Sbjct: 217 LLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELC 258

[Close]
BLAST of Cla002980 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-07
Identity = 45/164 (27.44%), Postives = 84/164 (51.22%), Query Frame = 1 

Query: 36  LWLYFIKRSLLPTTHDASISRDSAMVIYYIMREIRLDVGRIIAPQIRGLFFKPRGHLFFL 95
           +WL  IK+ ++PT H ++IS +  M++Y IM++I +++G+II+  I  L   PRG   F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 96  FLVTRLCANAEFM-EDVP-VRAVNGVLSAQSLRQILKDSPHLLEAANSKKRSTKSQEPLS 155
           +L+ +LC  A  M E +P V   +G+    +L +I+      +    +K +  K++E   
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRII-----AIHKNKAKIKCLKTKEGCK 147

Query: 156 L--------------QPPQPKKRKLVKKHFELKASSSQPSEAEE 184
           +              +   P+KRK   K  +L +  ++ S+ E+
Sbjct: 148 VVKEIDDDDVEEEDKKDNIPQKRKRQDKEDDLGSKKAKSSKIED 186

[Close]
BLAST of Cla002980 vs. NCBI nr
Match: gi|700202971|gb|KGN58104.1| (hypothetical protein Csa_3G511970 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 5.8e-07
Identity = 35/110 (31.82%), Postives = 58/110 (52.73%), Query Frame = 1 

Query: 1   MNDALTTIAKPGSKWNTSPKGIHTLASTCLI-----TEANLWLYFIKRSLLPTTHDASIS 60
           +++AL  +    +KW+    G + +    +      T+A++WL F+K+ ++ T  D++IS
Sbjct: 56  VDEALKKVVCSKTKWDKMSIGTYQIRMGLIFLHNPNTDASVWLVFVKKKIMSTRPDSTIS 115

Query: 61  RDSAMVIYYIMREIRLDVGRIIAPQIRGLFFKPRGHLFFLFLVTRLCANA 106
            D  M+IY IM EI ++VG II   I      P     FL L+ +LC  A
Sbjct: 116 MDKIMLIYCIMEEIPVNVGEIICKHILAWIKHPHDGRPFLHLIEKLCLKA 165

The following BLAST results are available for this feature:
BLAST of Cla002980 vs. TrEMBL
Match NameE-valueIdentityDescription
W9RBS1_9ROSA1.3e-0836.27Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1[more]
A0A0A0LAN0_CUCSA2.4e-0727.44Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1[more]
A0A0A0LAY9_CUCSA4.0e-0731.82Uncharacterized protein OS=Cucumis sativus GN=Csa_3G511970 PE=4 SV=1[more]
BLAST of Cla002980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703082781|ref|XP_010092041.1|1.8e-0836.27hypothetical protein L484_000844 [Morus notabilis][more]
gi|700202594|gb|KGN57727.1|3.4e-0727.44hypothetical protein Csa_3G263250 [Cucumis sativus][more]
gi|700202971|gb|KGN58104.1|5.8e-0731.82hypothetical protein Csa_3G511970 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002980Cla002980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla002980Wax gourdwgowmB690
Cla002980Cucumber (Chinese Long) v2cuwmB091
Cla002980Cucumber (Gy14) v1cgywmB535
Cla002980Cucurbita maxima (Rimu)cmawmB073
Cla002980Cucurbita moschata (Rifu)cmowmB065
Cla002980Melon (DHL92) v3.5.1mewmB292
Cla002980Watermelon (Charleston Gray)wcgwmB344
Cla002980Bottle gourd (USVL1VR-Ls)lsiwmB417
Cla002980Bottle gourd (USVL1VR-Ls)lsiwmB419
Cla002980Cucumber (Gy14) v2cgybwmB086
Cla002980Melon (DHL92) v3.6.1medwmB287
Cla002980Cucumber (Chinese Long) v3cucwmB100
Cla002980Watermelon (97103) v2wmwmbB406