Cla002976 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002976
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Gag/pol protein (Fragment) (AHRD V1 ***- E2GK51_BRYDI)
Location	Chr6 : 14914318 .. 14914722 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGAACAACCGTCCTCACAGATCCGGTACAAGGCCCTCGCGTACGTTTATAATGCACATATGAAGGAAGGCCAATCGGTAAGAGGACATGTTCTCGACTTGATGGTCCAATTCAACGTTGCTGAAATGAACGACAGAGTCATTGACGAGCAGAGTCAGGTGTCTTTTATTCTAGAATCTCTTCAGAAGAGCTCCCTTCAATTCCGTAACAATGCGGTTATGAATAAAATTGTGTACACCATGACAACCCTCCTGAATGAGTTACAGACTTATCAATCTCTTATGAAAAATAAGGGATTGATCGATGGAGAGGAAAATGTTGCCCATTTCAAGAAATTCCACAAGGGTTCATCCTCGGGAACTAAGTCTGTTCCATCATCTTCTGATTCTAAGAAGATCTAG

mRNA sequence

ATGTTTGAACAACCGTCCTCACAGATCCGGTACAAGGCCCTCGCGTACGTTTATAATGCACATATGAAGGAAGGCCAATCGGTAAGAGGACATGTTCTCGACTTGATGGTCCAATTCAACGTTGCTGAAATGAACGACAGAGTCATTGACGAGCAGAGTCAGGTGTCTTTTATTCTAGAATCTCTTCAGAAGAGCTCCCTTCAATTCCGTAACAATGCGGTTATGAATAAAATTGTGTACACCATGACAACCCTCCTGAATGAGTTACAGACTTATCAATCTCTTATGAAAAATAAGGGATTGATCGATGGAGAGGAAAATGTTGCCCATTTCAAGAAATTCCACAAGGGTTCATCCTCGGGAACTAAGTCTGTTCCATCATCTTCTGATTCTAAGAAGATCTAG

Coding sequence (CDS)

ATGTTTGAACAACCGTCCTCACAGATCCGGTACAAGGCCCTCGCGTACGTTTATAATGCACATATGAAGGAAGGCCAATCGGTAAGAGGACATGTTCTCGACTTGATGGTCCAATTCAACGTTGCTGAAATGAACGACAGAGTCATTGACGAGCAGAGTCAGGTGTCTTTTATTCTAGAATCTCTTCAGAAGAGCTCCCTTCAATTCCGTAACAATGCGGTTATGAATAAAATTGTGTACACCATGACAACCCTCCTGAATGAGTTACAGACTTATCAATCTCTTATGAAAAATAAGGGATTGATCGATGGAGAGGAAAATGTTGCCCATTTCAAGAAATTCCACAAGGGTTCATCCTCGGGAACTAAGTCTGTTCCATCATCTTCTGATTCTAAGAAGATCTAG

Protein sequence

MFEQPSSQIRYKALAYVYNAHMKEGQSVRGHVLDLMVQFNVAEMNDRVIDEQSQVSFILESLQKSSLQFRNNAVMNKIVYTMTTLLNELQTYQSLMKNKGLIDGEENVAHFKKFHKGSSSGTKSVPSSSDSKKI

Homology

[Close]

BLAST of Cla002976 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.5e-27
Identity = 72/134 (53.73%), Postives = 95/134 (70.90%), Query Frame = 1


Query: 1   MFEQPSSQIRYKALAYVYNAHMKEGQSVRGHVLDLMVQFNVAEMNDRVIDEQSQVSFILE 60
           MF QPS  +R++A+ ++Y   MKEG SVR HVLD+M+ FN+AE+N   IDE +QVSFIL+
Sbjct: 101 MFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQ 160

Query: 61  SLQKSSLQFRNNAVMNKIVYTMTTLLNELQTYQSLMKNKGLIDGEENVAHFK-KFHKGSS 120
           SL KS + F+ NA +NKI + +TTLLNELQ +Q+L  +KG  + E NVA  K KF +GSS
Sbjct: 161 SLPKSFVPFQTNASLNKIEFNLTTLLNELQRFQNLTLSKGK-EVEANVAVTKRKFIRGSS 220

Query: 121 SGTKSVPSSSDSKK 134
           S  K  PS +  KK
Sbjct: 221 SKNKVGPSKAQMKK 233

[Close]

BLAST of Cla002976 vs. TrEMBL
Match: A5AVN4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017217 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.6e-20
Identity = 64/138 (46.38%), Postives = 86/138 (62.32%), Query Frame = 1


Query: 1   MFEQPSSQIRYKALAYVYNAHMKEGQSVRGHVLDLMVQFNVAEMNDRVIDEQSQVSFILE 60
           MF +PS Q R++A+  V N+ MK G SVR HVL ++  FN AE+N   IDE++QV  ILE
Sbjct: 24  MFGRPSEQARHEAVKAVMNSKMKNGSSVREHVLKMIHHFNKAEINGAKIDEKTQVGMILE 83

Query: 61  SLQKSSLQFRNNAVMNKIVYTMTTLLNELQTYQSLMKNKGLIDGEENVAHFKK-FHKGSS 120
           +L  S LQFR N +MN     +T LLNELQ+Y++L+ +KG   G+ N+A       K SS
Sbjct: 84  TLSPSFLQFRTNYIMNHKKCNLTELLNELQSYETLIDDKG---GKANIAEANAVVGKASS 143

Query: 121 SGTK---SVPSSSDSKKI 135
           S  K   +V +  D KKI
Sbjct: 144 SRNKKKRNVRNQKDKKKI 158

[Close]

BLAST of Cla002976 vs. TrEMBL
Match: W9ST61_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003432 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.8e-13
Identity = 48/108 (44.44%), Postives = 64/108 (59.26%), Query Frame = 1


Query: 1   MFEQPSSQIRYKALAYVYNAHMKEGQSVRGHVLDLMVQFNVAEMNDRVIDEQSQVSFILE 60
           MF  PS + R  A+    N  MK+G SV+ HVL+++   + AE+N   IDE +QV  ILE
Sbjct: 76  MFGTPSEKARLDAVWAFMNDKMKKGSSVKAHVLNMIDHLHDAELNGARIDEATQVGIILE 135

Query: 61  SLQKSSLQFRNNAVMNKIVYTMTTLLNELQTYQSLMKNKGLIDGEENV 109
           SL  +  QF NN VMNK    +T L+N LQ ++S  K +G   GE NV
Sbjct: 136 SLSPNFHQFVNNFVMNKKKSNLTELMNNLQNFESTNKRRG---GEANV 180

[Close]

BLAST of Cla002976 vs. TrEMBL
Match: A0A165U314_9ROSI (Gag/pol protein OS=Momordica dioica PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 48/127 (37.80%), Postives = 72/127 (56.69%), Query Frame = 1


Query: 1   MFEQPSSQIRYKALAYVYNAHMKEGQSVRGHVLDLMVQFNVAEMNDRVIDEQSQVSFILE 60
           +F++ +  +R++A    Y   MKEG SV  HVLD+ +  + AE+N   IDE + VSFIL+
Sbjct: 102 IFQKNTWSLRHEAFTKFYTKRMKEGTSVSEHVLDMAMYSSRAEVNGGPIDEANAVSFILQ 161

Query: 61  SLQKSSLQFRNNAVMNKIVYTMTTLLNELQTYQSLMKNKGL---IDGEENVAHFKKFHKG 120
           SL KS   F  NA MNK+  +   L NELQ +Q+L  +K +   +  +     FK+  KG
Sbjct: 162 SLPKSYKGFLLNASMNKMNKSPGELFNELQRFQNLTLSKEVEANMVNKVTAKRFKRNDKG 221

Query: 121 SSSGTKS 125
               +K+
Sbjct: 222 KKGSSKN 228

[Close]

BLAST of Cla002976 vs. TrEMBL
Match: W9RV37_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006900 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 1


Query: 1   MFEQPSSQIRYKALAYVYNAHMKEGQSVRGHVLDLMVQFNVAEMNDRVIDEQSQVSFILE 60
           MF  PS + R  A+    N  MK+G SV+ HVL+++   + AE+N   IDE ++V  ILE
Sbjct: 76  MFGPPSEKARLAAVRAFMNDKMKKGSSVKVHVLNMIDHLHDAELNGARIDETTKVGIILE 135

Query: 61  SLQKSSLQFRNNAVMNKIVYTMTTLLNELQTYQSLMKNKGLIDGEENV 109
           S      +F NN VMNK    +T L+N+LQ ++S  K KG   GE NV
Sbjct: 136 SPSPVFYEFVNNFVMNKKKSNLTELMNDLQNFESTNKRKG---GEANV 180

[Close]

BLAST of Cla002976 vs. NCBI nr
Match: gi|659113937|ref|XP_008456829.1| (PREDICTED: uncharacterized protein LOC103496667 [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 8.2e-40
Identity = 93/134 (69.40%), Postives = 109/134 (81.34%), Query Frame = 1


Query: 1   MFEQPSSQIRYKALAYVYNAHMKEGQSVRGHVLDLMVQFNVAEMNDRVIDEQSQVSFILE 60
           MF Q S QI++ AL Y+YNA + EG SVR HVL++MV FNVAEMN  VIDE SQVSFILE
Sbjct: 1   MFGQASYQIKHDALKYIYNARINEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 60

Query: 61  SLQKSSLQFRNNAVMNKIVYTMTTLLNELQTYQSLMKNKGLIDGEENVA-HFKKFHKGSS 120
           SL +S LQFR+NAVMNKI YT+TTLLNELQT++SLMK KG   GE NVA   +KFH+GS+
Sbjct: 61  SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 120

Query: 121 SGTKSVPSSSDSKK 134
           SGTKS+PSSS +KK
Sbjct: 121 SGTKSMPSSSGNKK 133

[Close]

BLAST of Cla002976 vs. NCBI nr
Match: gi|659113933|ref|XP_008456826.1| (PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 1.7e-37
Identity = 89/134 (66.42%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MFEQPSSQIRYKALAYVYNAHMKEGQSVRGHVLDLMVQFNVAEMNDRVIDEQSQVSFILE 60
           MF Q S QI++ AL Y+YNA M +G  VR HVL++MV FNVAEMN  VIDE +QVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNDGALVREHVLNMMVYFNVAEMNGAVIDEANQVSFILE 160

Query: 61  SLQKSSLQFRNNAVMNKIVYTMTTLLNELQTYQSLMKNKGLIDGEENVA-HFKKFHKGSS 120
           SL +S LQFR+N VMNKI YT+TTLLNELQT++SLMK KG   GE NVA   +KFH+GS+
Sbjct: 161 SLLESFLQFRSNVVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKSVPSSSDSKK 134
           SGTK +PSSS +KK
Sbjct: 221 SGTKYMPSSSGNKK 233

[Close]

BLAST of Cla002976 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 129.8 bits (325), Expect = 3.6e-27
Identity = 72/134 (53.73%), Postives = 95/134 (70.90%), Query Frame = 1


Query: 1   MFEQPSSQIRYKALAYVYNAHMKEGQSVRGHVLDLMVQFNVAEMNDRVIDEQSQVSFILE 60
           MF QPS  +R++A+ ++Y   MKEG SVR HVLD+M+ FN+AE+N   IDE +QVSFIL+
Sbjct: 101 MFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQ 160

Query: 61  SLQKSSLQFRNNAVMNKIVYTMTTLLNELQTYQSLMKNKGLIDGEENVAHFK-KFHKGSS 120
           SL KS + F+ NA +NKI + +TTLLNELQ +Q+L  +KG  + E NVA  K KF +GSS
Sbjct: 161 SLPKSFVPFQTNASLNKIEFNLTTLLNELQRFQNLTLSKGK-EVEANVAVTKRKFIRGSS 220

Query: 121 SGTKSVPSSSDSKK 134
           S  K  PS +  KK
Sbjct: 221 SKNKVGPSKAQMKK 233

[Close]

BLAST of Cla002976 vs. NCBI nr
Match: gi|659118732|ref|XP_008459275.1| (PREDICTED: uncharacterized protein LOC103498451 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 3.7e-24
Identity = 62/97 (63.92%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 1   MFEQPSSQIRYKALAYVYNAHMKEGQSVRGHVLDLMVQFNVAEMNDRVIDEQSQVSFILE 60
           MF Q S QI+ + + YVYNA MK+ QSV+ HVL+++V FNV EMN  V DE+SQVSFIL+
Sbjct: 90  MFGQLSIQIKQETIKYVYNARMKDSQSVKKHVLNMIVHFNVVEMNVVVFDEKSQVSFILK 149

Query: 61  SLQKSSLQFRNNAVMNKIVYTMTTLLNELQTYQSLMK 98
            L KSSLQF NNA MNKI Y MT  LNELQT+QSL +
Sbjct: 150 YLPKSSLQFNNNAEMNKIKYNMTIFLNELQTFQSLKR 186

[Close]

BLAST of Cla002976 vs. NCBI nr
Match: gi|659082068|ref|XP_008441651.1| (PREDICTED: uncharacterized protein LOC103485734 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 1


Query: 1   MFEQPSSQIRYKALAYVYNAHMKEGQSVRGHVLDLMVQFNVAEMNDRVIDEQSQVSFILE 60
           MF QPS Q+R + + +VYN HM EGQSV+ HVLD++V FN+ E+N  V DE+SQVSFIL+
Sbjct: 62  MFGQPSIQMRQEDIKHVYNVHMNEGQSVKEHVLDMIVYFNIVEINGAVFDEKSQVSFILK 121

Query: 61  SLQKSSLQFRNNAVMNKIVYTMTT 85
           SL KS LQFR+N +MNKI Y M T
Sbjct: 122 SLPKSFLQFRSNVIMNKIEYNMAT 145

The following BLAST results are available for this feature:

BLAST of Cla002976 vs. TrEMBL


Match Name	E-value	Identity	Description
E2GK51_BRYDI	2.5e-27	53.73	Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1	[more]
A5AVN4_VITVI	6.6e-20	46.38	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017217 PE=4 SV=1	[more]
W9ST61_9ROSA	7.8e-13	44.44	Uncharacterized protein OS=Morus notabilis GN=L484_003432 PE=4 SV=1	[more]
A0A165U314_9ROSI	1.1e-11	37.80	Gag/pol protein OS=Momordica dioica PE=4 SV=1	[more]
W9RV37_9ROSA	1.5e-11	42.59	Uncharacterized protein OS=Morus notabilis GN=L484_006900 PE=4 SV=1	[more]

BLAST of Cla002976 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113937\|ref\|XP_008456829.1\|	8.2e-40	69.40	PREDICTED: uncharacterized protein LOC103496667 [Cucumis melo]	[more]
gi\|659113933\|ref\|XP_008456826.1\|	1.7e-37	66.42	PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo]	[more]
gi\|299474487\|gb\|ADJ18449.1\|	3.6e-27	53.73	gag/pol protein [Bryonia dioica]	[more]
gi\|659118732\|ref\|XP_008459275.1\|	3.7e-24	63.92	PREDICTED: uncharacterized protein LOC103498451 [Cucumis melo]	[more]
gi\|659082068\|ref\|XP_008441651.1\|	1.1e-20	61.90	PREDICTED: uncharacterized protein LOC103485734 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002976	Cla002976.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..97 score: 2.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002976	Cucumber (Chinese Long) v3	cucwmB100
Cla002976	Watermelon (97103) v2	wmwmbB406
Cla002976	Wax gourd	wgowmB680
Cla002976	Wax gourd	wgowmB690
Cla002976	Cucumber (Chinese Long) v2	cuwmB091
Cla002976	Cucumber (Gy14) v1	cgywmB535
Cla002976	Cucurbita maxima (Rimu)	cmawmB073
Cla002976	Cucurbita moschata (Rifu)	cmowmB065
Cla002976	Melon (DHL92) v3.5.1	mewmB292
Cla002976	Watermelon (Charleston Gray)	wcgwmB344
Cla002976	Bottle gourd (USVL1VR-Ls)	lsiwmB417
Cla002976	Bottle gourd (USVL1VR-Ls)	lsiwmB419
Cla002976	Cucumber (Gy14) v2	cgybwmB086
Cla002976	Melon (DHL92) v3.6.1	medwmB287