Cla002969 (gene) Watermelon (97103) v1

NameCla002969
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTy3-gypsy retrotransposon protein (AHRD V1 ***- E5GCP6_CUCME)
LocationChr6 : 14690988 .. 14691176 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATGTAACAGCAAAGGCAGCCATGGTAGAGATGGAGAGAAAAATAGATCTCCTAATGAAAGCTGTCGAGGAGCAAGATCACGAGATCGCTGTCTTAAGAGAGCAGATGCAGGCTCGAGAAACTGTCGAGTCAAGCCAAACGCTCGCTGCCAAGGCCAATGACAAAGGAAAAACTCTGTTGTAG

mRNA sequence

ATGGCTGATGTAACAGCAAAGGCAGCCATGGTAGAGATGGAGAGAAAAATAGATCTCCTAATGAAAGCTGTCGAGGAGCAAGATCACGAGATCGCTGTCTTAAGAGAGCAGATGCAGGCTCGAGAAACTGTCGAGTCAAGCCAAACGCTCGCTGCCAAGGCCAATGACAAAGGAAAAACTCTGTTGTAG

Coding sequence (CDS)

ATGGCTGATGTAACAGCAAAGGCAGCCATGGTAGAGATGGAGAGAAAAATAGATCTCCTAATGAAAGCTGTCGAGGAGCAAGATCACGAGATCGCTGTCTTAAGAGAGCAGATGCAGGCTCGAGAAACTGTCGAGTCAAGCCAAACGCTCGCTGCCAAGGCCAATGACAAAGGAAAAACTCTGTTGTAG

Protein sequence

MADVTAKAAMVEMERKIDLLMKAVEEQDHEIAVLREQMQARETVESSQTLAAKANDKGKTLL
BLAST of Cla002969 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-12
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 1

Query: 1   MADVTAKAAMVEMERKIDLLMKAVEEQDHEIAVLREQMQARETVESSQTLAAKANDKGKT 60
           M DVTA+A + EMERKI+ LMK +EE+DHEIA L++QM+A ET ESSQT   KA DKGK 
Sbjct: 88  MVDVTAEATVTEMERKINFLMKVIEERDHEIAALKDQMKACETGESSQTPVVKATDKGKN 147

Query: 61  LL 63
           ++
Sbjct: 148 VV 149

BLAST of Cla002969 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.0e-12
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1

Query: 1   MADVTAKAAMVEMERKIDLLMKAVEEQDHEIAVLREQMQARETVESSQTLAAKANDKGKT 60
           M DVTA+A M EME+KI+ LMK VEE+DHEIA L++QM+A E+ ESSQT   K  DKGK 
Sbjct: 57  MIDVTAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKN 116

Query: 61  L 62
           +
Sbjct: 117 V 117

BLAST of Cla002969 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 79.7 bits (195), Expect = 2.0e-12
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 1

Query: 1   MADVTAKAAMVEMERKIDLLMKAVEEQDHEIAVLREQMQARETVESSQTLAAKANDKGKT 60
           M DVTA+A + EMERKI+ LMK +EE+DHEIA L++QM+A ET ESSQT   KA DKGK 
Sbjct: 88  MVDVTAEATVTEMERKINFLMKVIEERDHEIAALKDQMKACETGESSQTPVVKATDKGKN 147

Query: 61  LL 63
           ++
Sbjct: 148 VV 149

BLAST of Cla002969 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 78.2 bits (191), Expect = 5.7e-12
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1

Query: 1   MADVTAKAAMVEMERKIDLLMKAVEEQDHEIAVLREQMQARETVESSQTLAAKANDKGKT 60
           M DVTA+A M EME+KI+ LMK VEE+DHEIA L++QM+A E+ ESSQT   K  DKGK 
Sbjct: 57  MIDVTAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKN 116

Query: 61  L 62
           +
Sbjct: 117 V 117

BLAST of Cla002969 vs. NCBI nr
Match: gi|659118742|ref|XP_008459280.1| (PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 7.0e-10
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 1

Query: 1  MADVTAKAAMVEMERKIDLLMKAVEEQDHEIAVLREQMQARETVESSQT 50
          M D+TA+AAM EMERKI+L+MK V+EQDH+I  LREQMQ  ET +SSQT
Sbjct: 47 MVDITAEAAMTEMERKINLVMKVVKEQDHKITALREQMQIHETTKSSQT 95

BLAST of Cla002969 vs. NCBI nr
Match: gi|659127214|ref|XP_008463585.1| (PREDICTED: uncharacterized protein LOC103501695 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-09
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 1

Query: 1  MADVTAKAAMVEMERKIDLLMKAVEEQDHEIAVLREQMQARETVES 47
          MAD+TA+AAM EMERKI+ LMKAVEE+DHEI   REQM+ R+T ES
Sbjct: 5  MADITAEAAMAEMERKINFLMKAVEERDHEITACREQMRTRKTAES 50

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GCP6_CUCME1.4e-1262.90Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GB67_CUCME4.0e-1262.30Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|307136441|gb|ADN34247.1|2.0e-1262.90ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307135838|gb|ADN33709.1|5.7e-1262.30retrotransposon gag protein [Cucumis melo subsp. melo][more]
gi|659118742|ref|XP_008459280.1|7.0e-1069.39PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo][more]
gi|659127214|ref|XP_008463585.1|3.5e-0971.74PREDICTED: uncharacterized protein LOC103501695 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002969Cla002969.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 10..37
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None