Cla002966 (gene) Watermelon (97103) v1

Overview
NameCla002966
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 14547761 .. 14548102 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCTAAGAAGAGCAAAGGTAAGGGTGTAGCGTCTAGTTCTACTAGAGCCCAAGATGAGCCATCCTATGATAGGTATAGATTCGTATCATTGGCCGCCTCAAATAGGTTCACTACTACCATGATTGCCAAGGTTTTTATTCCTGAGCGGGGGCTCAGGCTCGAGGTTGATTTCTTCCCCCAGATCCCTGTTGAAATTCAACATCGTGGGTGGGAATTATTGGCTCGGCAGCCTGATCTTGCCATAGTCCCCGTAGTGAGGGAATTTTACTATTGGCTGAAGATTCTGATGAGTCCTATGTTAGAGGTCGGTCGGTATCTTTCTCCCCTTCTGCTATAA

mRNA sequence

ATGGCGCCTAAGAAGAGCAAAGGTAAGGGTGTAGCGTCTAGTTCTACTAGAGCCCAAGATGAGCCATCCTATGATAGGTATAGATTCGTATCATTGGCCGCCTCAAATAGGTTCACTACTACCATGATTGCCAAGGTTTTTATTCCTGAGCGGGGGCTCAGGCTCGAGGTTGATTTCTTCCCCCAGATCCCTGTTGAAATTCAACATCGTGGGTGGGAATTATTGGCTCGGCAGCCTGATCTTGCCATAGTCCCCGTAGTGAGGGAATTTTACTATTGGCTGAAGATTCTGATGAGTCCTATGTTAGAGGTCGGTCGGTATCTTTCTCCCCTTCTGCTATAA

Coding sequence (CDS)

ATGGCGCCTAAGAAGAGCAAAGGTAAGGGTGTAGCGTCTAGTTCTACTAGAGCCCAAGATGAGCCATCCTATGATAGGTATAGATTCGTATCATTGGCCGCCTCAAATAGGTTCACTACTACCATGATTGCCAAGGTTTTTATTCCTGAGCGGGGGCTCAGGCTCGAGGTTGATTTCTTCCCCCAGATCCCTGTTGAAATTCAACATCGTGGGTGGGAATTATTGGCTCGGCAGCCTGATCTTGCCATAGTCCCCGTAGTGAGGGAATTTTACTATTGGCTGAAGATTCTGATGAGTCCTATGTTAGAGGTCGGTCGGTATCTTTCTCCCCTTCTGCTATAA

Protein sequence

MAPKKSKGKGVASSSTRAQDEPSYDRYRFVSLAASNRFTTTMIAKVFIPERGLRLEVDFFPQIPVEIQHRGWELLARQPDLAIVPVVREFYYWLKILMSPMLEVGRYLSPLLL
Homology
[Close]
BLAST of Cla002966 vs. TrEMBL
Match: A0A061FAJ6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_032752 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.3e-08
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1 

Query: 1  MAPKKSKGKGVASSSTRAQDEPSYDRYRFVSLAASNRFTTTMIAKVFIPERGLRLEVDFF 60
          MAPK+SK     SSS       S+DR +F+S  AS R+ T++I KV IPERG+ + +  +
Sbjct: 1  MAPKRSK----PSSSG------SFDRSKFISAEASTRYYTSLINKVPIPERGIEIPILPY 60

Query: 61 PQIPVEIQHRGWELLARQPDLAIVPVVREFY 92
           +I   I+ R W     QP++ +V VVREFY
Sbjct: 61 KEINDLIRDRYWHQFCHQPNVVVVLVVREFY 81

[Close]
BLAST of Cla002966 vs. TrEMBL
Match: A0A061F2U9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024087 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-07
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 1 

Query: 1  MAPKKSKGKGVASSSTRAQDEPSYDRYRFVSLAASNRFTTTMIAKVFIPERGLRLEVDFF 60
          MAPK+SK     SSS       S+DR +F+S+ A  R+ T++I +  IPERG+ + +  +
Sbjct: 1  MAPKRSK----PSSSG------SFDRSKFISVEAFTRYHTSLINQRPIPERGIEIPILPY 60

Query: 61 PQIPVEIQHRGWELLARQPDLAIVPVVREFY 92
           +I   I  R W     QPD  +VPVVREFY
Sbjct: 61 KEINDMIHDRYWCQFCHQPDATVVPVVREFY 81

[Close]
BLAST of Cla002966 vs. NCBI nr
Match: gi|590612524|ref|XP_007022408.1| (Uncharacterized protein TCM_032752 [Theobroma cacao])

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1 

Query: 1  MAPKKSKGKGVASSSTRAQDEPSYDRYRFVSLAASNRFTTTMIAKVFIPERGLRLEVDFF 60
          MAPK+SK     SSS       S+DR +F+S  AS R+ T++I KV IPERG+ + +  +
Sbjct: 1  MAPKRSK----PSSSG------SFDRSKFISAEASTRYYTSLINKVPIPERGIEIPILPY 60

Query: 61 PQIPVEIQHRGWELLARQPDLAIVPVVREFY 92
           +I   I+ R W     QP++ +V VVREFY
Sbjct: 61 KEINDLIRDRYWHQFCHQPNVVVVLVVREFY 81

[Close]
BLAST of Cla002966 vs. NCBI nr
Match: gi|590634332|ref|XP_007028347.1| (Uncharacterized protein TCM_024087 [Theobroma cacao])

HSP 1 Score: 62.4 bits (150), Expect = 5.9e-07
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 1 

Query: 1  MAPKKSKGKGVASSSTRAQDEPSYDRYRFVSLAASNRFTTTMIAKVFIPERGLRLEVDFF 60
          MAPK+SK     SSS       S+DR +F+S+ A  R+ T++I +  IPERG+ + +  +
Sbjct: 1  MAPKRSK----PSSSG------SFDRSKFISVEAFTRYHTSLINQRPIPERGIEIPILPY 60

Query: 61 PQIPVEIQHRGWELLARQPDLAIVPVVREFY 92
           +I   I  R W     QPD  +VPVVREFY
Sbjct: 61 KEINDMIHDRYWCQFCHQPDATVVPVVREFY 81

The following BLAST results are available for this feature:
BLAST of Cla002966 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061FAJ6_THECC8.3e-0842.86Uncharacterized protein OS=Theobroma cacao GN=TCM_032752 PE=4 SV=1[more]
A0A061F2U9_THECC4.1e-0741.76Uncharacterized protein OS=Theobroma cacao GN=TCM_024087 PE=4 SV=1[more]
BLAST of Cla002966 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|590612524|ref|XP_007022408.1|1.2e-0742.86Uncharacterized protein TCM_032752 [Theobroma cacao][more]
gi|590634332|ref|XP_007028347.1|5.9e-0741.76Uncharacterized protein TCM_024087 [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002966Cla002966.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla002966Watermelon (97103) v2wmwmbB406
Cla002966Wax gourdwgowmB680
Cla002966Cucurbita maxima (Rimu)cmawmB073
Cla002966Cucurbita moschata (Rifu)cmowmB065
Cla002966Watermelon (Charleston Gray)wcgwmB344
Cla002966Bottle gourd (USVL1VR-Ls)lsiwmB419