Cla002857 (gene) Watermelon (97103) v1

Overview
NameCla002857
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr8 : 14001185 .. 14001592 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGAAAGAGGAGGATCAGCTAGATTCCCCCATGGACATCAGAGGCAAAATTCACACAAATCAGCGCCTAGTCCACCATCATCAATGGAAGCTCTTCTGAAGGAATATATGCAGAAGAATGACGCCTTGTTGCAAACCCAGGCGTCATCCATCCGAAATTTAGAGCTTCAGATTGGCCAGATCGCCGGAGAGCTAAAGACGCGAAAAAAAGGATCTCTTCCTAGCAACACTGAAGCCCCACACGGTACGGGCAGTTCAGGTAAAGAACAATGTCAAGCTGTGACATTGCGAAGTGGAAGAACTAAGAACGAACTTCCCTGCCTAGAGAACTCTCAACCAGCAATTTATCATTCTAATCCTACAACTGATTCTGACCCATCAACGCATGTCCCCTATCTTATATAA

mRNA sequence

ATGCATGAAAGAGGAGGATCAGCTAGATTCCCCCATGGACATCAGAGGCAAAATTCACACAAATCAGCGCCTAGTCCACCATCATCAATGGAAGCTCTTCTGAAGGAATATATGCAGAAGAATGACGCCTTGTTGCAAACCCAGGCGTCATCCATCCGAAATTTAGAGCTTCAGATTGGCCAGATCGCCGGAGAGCTAAAGACGCGAAAAAAAGGATCTCTTCCTAGCAACACTGAAGCCCCACACGGTACGGGCAGTTCAGGTAAAGAACAATGTCAAGCTGTGACATTGCGAAGTGGAAGAACTAAGAACGAACTTCCCTGCCTAGAGAACTCTCAACCAGCAATTTATCATTCTAATCCTACAACTGATTCTGACCCATCAACGCATGTCCCCTATCTTATATAA

Coding sequence (CDS)

ATGCATGAAAGAGGAGGATCAGCTAGATTCCCCCATGGACATCAGAGGCAAAATTCACACAAATCAGCGCCTAGTCCACCATCATCAATGGAAGCTCTTCTGAAGGAATATATGCAGAAGAATGACGCCTTGTTGCAAACCCAGGCGTCATCCATCCGAAATTTAGAGCTTCAGATTGGCCAGATCGCCGGAGAGCTAAAGACGCGAAAAAAAGGATCTCTTCCTAGCAACACTGAAGCCCCACACGGTACGGGCAGTTCAGGTAAAGAACAATGTCAAGCTGTGACATTGCGAAGTGGAAGAACTAAGAACGAACTTCCCTGCCTAGAGAACTCTCAACCAGCAATTTATCATTCTAATCCTACAACTGATTCTGACCCATCAACGCATGTCCCCTATCTTATATAA

Protein sequence

MHERGGSARFPHGHQRQNSHKSAPSPPSSMEALLKEYMQKNDALLQTQASSIRNLELQIGQIAGELKTRKKGSLPSNTEAPHGTGSSGKEQCQAVTLRSGRTKNELPCLENSQPAIYHSNPTTDSDPSTHVPYLI
Homology
[Close]
BLAST of Cla002857 vs. TrEMBL
Match: A0A0A0KMN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G055570 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.6e-20
Identity = 54/84 (64.29%), Postives = 67/84 (79.76%), Query Frame = 1 

Query: 14  HQRQNSHKSAPSPPSSMEALLKEYMQKNDALLQTQASSIRNLELQIGQIAGELKTRKKGS 73
           H    SH S+ S PS ME+L +EYMQ+NDALLQ+QA+SI+NLELQ+GQIA ++  + KG+
Sbjct: 55  HILNQSHSSSSSLPS-MESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGT 114

Query: 74  LPSNTEAPHGTGSSGKEQCQAVTL 98
           LPSNTE P   GSSGKE+CQAVTL
Sbjct: 115 LPSNTEIPIQGGSSGKEKCQAVTL 137

[Close]
BLAST of Cla002857 vs. TrEMBL
Match: A0A0A0KN83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G403040 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.1e-14
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1 

Query: 30  MEALLKEYMQKNDALLQTQASSIRNLELQIGQIAGELKTRKKGSLPSNTEAPHGTGSSGK 89
           MEAL +EYMQ+NDALLQ+QASSI+NLELQ+GQ+A ++  R KG+L  NT+ P   G S  
Sbjct: 48  MEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSN 107

Query: 90  EQCQAVTLRSGR 102
           ++ Q VTLRS R
Sbjct: 108 KKSQLVTLRSRR 119

[Close]
BLAST of Cla002857 vs. TrEMBL
Match: A0A061EW79_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024420 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 1 

Query: 29  SMEALLKEYMQKNDALLQTQASSIRNLELQIGQIAGELKTRKKGSLPSNTEAPHGTGSSG 88
           SME +  ++M K +A +Q QA+SIRNLE+Q+GQ+A  L  R +G LPS+TE        G
Sbjct: 245 SMEDIFMQFMTKTNAFIQNQATSIRNLEIQVGQLASALNIRPQGILPSDTEP--NPRREG 304

Query: 89  KEQCQAVTLRSGRTKNELP 108
           KE C A+TL +G+ +N+LP
Sbjct: 305 KEHCMAITLHNGK-ENKLP 320

[Close]
BLAST of Cla002857 vs. TrEMBL
Match: A0A061FVX6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_012596 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-10
Identity = 35/86 (40.70%), Postives = 54/86 (62.79%), Query Frame = 1 

Query: 16  RQNSHKSAPSPPSSMEALLKEYMQKNDALLQTQASSIRNLELQIGQIAGELKTRKKGSLP 75
           +Q +    P   S  E  L +Y+ KNDA++Q+ ++S+RNL+ Q+GQ+A  +  R + +LP
Sbjct: 197 QQQAKPPIPEKKSQTEEFLLQYISKNDAIIQSYSASLRNLKTQVGQLANSINNRPQCALP 256

Query: 76  SNTEAPHGTGSSGKEQCQAVTLRSGR 102
           S+T+        GKE C AVTLRSG+
Sbjct: 257 SDTQ----VNPKGKEHCNAVTLRSGK 278

[Close]
BLAST of Cla002857 vs. TrEMBL
Match: A0A061G9E9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_027580 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.6e-08
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 1 

Query: 8   ARFPHGHQRQNSHKSAPSPPSSMEALLKEYMQKNDALLQTQASSIRNLELQIGQIAGELK 67
           + FP G     S    P     ME +  +YM K DA +Q+Q +SIRNLE Q+GQ+A  L 
Sbjct: 49  SNFPLGFP---SRAPMPEKKPLMEDMFMQYMTKIDAFIQSQTTSIRNLEAQVGQLANALN 108

Query: 68  TRKKGSLPSNTEAPHGTGSSGKEQCQAVTLRSGR 102
            +  G+LPS+ E    + + GKE  + + LR+G+
Sbjct: 109 NKPHGTLPSDNEP--NSKTEGKEHYKVINLRNGK 137

[Close]
BLAST of Cla002857 vs. NCBI nr
Match: gi|700194490|gb|KGN49667.1| (hypothetical protein Csa_5G055570 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 54/84 (64.29%), Postives = 67/84 (79.76%), Query Frame = 1 

Query: 14  HQRQNSHKSAPSPPSSMEALLKEYMQKNDALLQTQASSIRNLELQIGQIAGELKTRKKGS 73
           H    SH S+ S PS ME+L +EYMQ+NDALLQ+QA+SI+NLELQ+GQIA ++  + KG+
Sbjct: 55  HILNQSHSSSSSLPS-MESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGT 114

Query: 74  LPSNTEAPHGTGSSGKEQCQAVTL 98
           LPSNTE P   GSSGKE+CQAVTL
Sbjct: 115 LPSNTEIPIQGGSSGKEKCQAVTL 137

[Close]
BLAST of Cla002857 vs. NCBI nr
Match: gi|985447994|ref|XP_015385573.1| (PREDICTED: uncharacterized protein LOC107176925 [Citrus sinensis])

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 52/130 (40.00%), Postives = 76/130 (58.46%), Query Frame = 1 

Query: 11  PHG-HQRQNSHKSAPSPP-SSMEALLKEYMQKNDALLQTQASSIRNLELQIGQIAGELKT 70
           PHG HQ+    K     P +S+EAL+KEY+ KN+A++Q+QA S+RNLE Q+GQ+A  + +
Sbjct: 153 PHGFHQQSQGQKHISQDPITSLEALIKEYIAKNEAIVQSQAVSLRNLENQMGQLATAMSS 212

Query: 71  RKKGSLPSNTEAPHGTGSSGKEQCQAVTLRSGR--------TKNELPCLENSQP----AI 127
           R + SLPSNT  P       KE C+ ++LRSG+        TKN + C    +P    ++
Sbjct: 213 RTQESLPSNTVDPR---RESKEHCKVISLRSGKNVDIPVEVTKNGMECNSAQKPTQKGSL 272

[Close]
BLAST of Cla002857 vs. NCBI nr
Match: gi|700195831|gb|KGN51008.1| (hypothetical protein Csa_5G403040 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 5.9e-14
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1 

Query: 30  MEALLKEYMQKNDALLQTQASSIRNLELQIGQIAGELKTRKKGSLPSNTEAPHGTGSSGK 89
           MEAL +EYMQ+NDALLQ+QASSI+NLELQ+GQ+A ++  R KG+L  NT+ P   G S  
Sbjct: 48  MEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSN 107

Query: 90  EQCQAVTLRSGR 102
           ++ Q VTLRS R
Sbjct: 108 KKSQLVTLRSRR 119

[Close]
BLAST of Cla002857 vs. NCBI nr
Match: gi|985466626|ref|XP_015389623.1| (PREDICTED: uncharacterized protein LOC107178680 [Citrus sinensis])

HSP 1 Score: 82.8 bits (203), Expect = 5.0e-13
Identity = 49/125 (39.20%), Postives = 70/125 (56.00%), Query Frame = 1 

Query: 11  PHGHQRQNSHKSAPSPP-SSMEALLKEYMQKNDALLQTQASSIRNLELQIGQIAGELKTR 70
           P  HQ+    K     P +S+E L+KEY+ KN+A++Q+QA S+RNLE QIGQ+A  + +R
Sbjct: 265 PGFHQQSQGQKHINQDPITSLEVLIKEYIAKNEAIVQSQAVSLRNLENQIGQLATVMSSR 324

Query: 71  KKGSLPSNTEAPHGTGSSGKEQCQAVTLRSGRTKN-ELPCLENSQPAIYHSNPTTDSDPS 130
            +GSLPSNTE         KE C+ ++LRSG+  +  +   +N    I    PT      
Sbjct: 325 TQGSLPSNTEDHR---RESKEHCKVISLRSGKHVDIPVEVTKNGIEGISAQKPTQKGSML 384

Query: 131 THVPY 134
              PY
Sbjct: 385 QQTPY 386

[Close]
BLAST of Cla002857 vs. NCBI nr
Match: gi|985471059|ref|XP_015381143.1| (PREDICTED: uncharacterized protein LOC107174616 [Citrus sinensis])

HSP 1 Score: 82.0 bits (201), Expect = 8.6e-13
Identity = 47/112 (41.96%), Postives = 67/112 (59.82%), Query Frame = 1 

Query: 11  PHGHQRQNSHKSAPSPP--SSMEALLKEYMQKNDALLQTQASSIRNLELQIGQIAGELKT 70
           P G  +QN  + + +    SS+E L+K+Y+ KN+A++Q    S+RNLE QIGQ+A  L  
Sbjct: 218 PPGFYQQNQEQISINNDQLSSLEGLIKDYIVKNEAVVQNHTVSLRNLENQIGQLAAALSN 277

Query: 71  RKKGSLPSNTEAPHGTGSSGKEQCQAVTLRSGRTKNELPCLENSQPAIYHSN 121
             +GSLPSNTE P      GKE C+ + LRSG+  +     E+SQ A +  N
Sbjct: 278 IPQGSLPSNTEDPR---REGKEHCKVINLRSGKDVHSPHTGESSQAAAFAKN 326

The following BLAST results are available for this feature:
BLAST of Cla002857 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMN3_CUCSA8.6e-2064.29Uncharacterized protein OS=Cucumis sativus GN=Csa_5G055570 PE=4 SV=1[more]
A0A0A0KN83_CUCSA4.1e-1459.72Uncharacterized protein OS=Cucumis sativus GN=Csa_5G403040 PE=4 SV=1[more]
A0A061EW79_THECC1.6e-1048.10Uncharacterized protein OS=Theobroma cacao GN=TCM_024420 PE=4 SV=1[more]
A0A061FVX6_THECC4.7e-1040.70Uncharacterized protein OS=Theobroma cacao GN=TCM_012596 PE=4 SV=1[more]
A0A061G9E9_THECC7.6e-0838.30Uncharacterized protein OS=Theobroma cacao GN=TCM_027580 PE=4 SV=1[more]
BLAST of Cla002857 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194490|gb|KGN49667.1|1.2e-1964.29hypothetical protein Csa_5G055570 [Cucumis sativus][more]
gi|985447994|ref|XP_015385573.1|1.6e-1440.00PREDICTED: uncharacterized protein LOC107176925 [Citrus sinensis][more]
gi|700195831|gb|KGN51008.1|5.9e-1459.72hypothetical protein Csa_5G403040 [Cucumis sativus][more]
gi|985466626|ref|XP_015389623.1|5.0e-1339.20PREDICTED: uncharacterized protein LOC107178680 [Citrus sinensis][more]
gi|985471059|ref|XP_015381143.1|8.6e-1341.96PREDICTED: uncharacterized protein LOC107174616 [Citrus sinensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002857Cla002857.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla002857Melon (DHL92) v3.5.1mewmB305
Cla002857Melon (DHL92) v3.5.1mewmB313
Cla002857Watermelon (Charleston Gray)wcgwmB405
Cla002857Bottle gourd (USVL1VR-Ls)lsiwmB474
Cla002857Watermelon (97103) v2wmwmbB106
Cla002857Wax gourdwgowmB324