Cla002855 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002855
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr8 : 13918513 .. 13920538 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAAAGCCAAGCCAGTACAATCAGGAATTTAGAAGTTCAATTGGGTCAAATTGCAGATGAGCTCAAGAATCAAACGCAAGGAGCATTGCTAAGTACAACCAAAGTTCCAAGAGGGAACTTAGAAGAACAATGTCAAGATGAGACATTGATACGTGGGGAAAATACCCAACCCACAATTGCGCAAAATCAGGGGACACAAGGAAACTTGCAACCCGTAAATGCTCCAACAACGAGTCAATCGATGGAGAGTACTATACATAATGTCAATCAACCATCATCATCTACCGAATCACAAGAAGAGGAAAATATAGAGCGGAGAGAAAGAGCAACGCAAGCAGAACCTGTGTCTGTATATAAAGATACCACTCCTGGACGCGTCCTGATTGACGTCCAAGAAGGAATATCAATGAGCTGTGTGGGTTATCAACAGGTAAAATTTAATGTGGTTAACGTATTGAAAGATCTTAATGACTTTCAATCTTGTCAGATAAACGCAGATACCAATGAGAAGACAAGACCCACAAACGCAGCATTGAAAGATGAAATCCTCAAAAACAATGAAGATGGTGAAGAGGAAGAAATTAAATTACTCTCTAATCAGATAGGTAGGCAATCTGGGAGGGGGTGTGACATTAAACGCAGAGTATATTGAACGCATAGTAAGCTTAATAATAATAGATAAACACAACAACAAGTTTTTGACTTGGCGCCATTGCCGGGGACTTGAAATTTGTCATACAACAAGTTTTTGGTAATGTTGCCGAGGATTTTTGCATTGATTTAATTTTTTTTTTGGATTATTTTTGTTGTAAGAATTCCTCAGTTAAAGGAGTATTGTGAGTTTCTCCTCTGCCAAATGCTCCAAACAGTATCTGAGTGACGGGAGCAATCCAGAACTTGATATTGACCCTGAGATTGAGAGGACCTTCAGACGAAGGACAAGGTAGAATCGAAGAAGGACCAATCGTAGCTTGGACCTGATTCAAACGACTAGTGAGGAATTGTCTGCATAAACAGGAAAATTAATGGATATGACCTACACGTATGCCGTAGATATTCTCGACAGAATTTCGTGGAATACTAATGAGTGAGTGGACGACGGATATGGATTTTGCTCCACCGATAGAAAGCGAACGCAAGTGGATGCATCATCCTCATCGTCTTCCATGGAATCTCTTTTACGATAATTCATTTATAAAAATGATGCGATGCTTCAAAGCCAAGCCAGTACAATCAGGAATTTAGAAGTTCAATTGGGTCAAATTGCAGATGAGCTCAAGAATCAAACGCAAGGAGCATTGCTAAGTACAACCAAAGTTCCAAGAGGGAACTTAGAAGAACAATGTCAAGATGAGACATTGATACGTGGGGAAAATACCCAACCCACAATTGCGCAAAATCAGGGGACACAAGGAAACTTGCAACCCGTAAATGCTCCAACAACGAGTCAATCGATGGAGAGTACTATACATAATGTCAATCAACCATCATCATCTACCGAATCACAAGAAGAGGAAAATATAGAGCGGAGAGAAAGAGCAACGCAAGCAGAACCTGTGTCTGTATATAAAGATACCACTCCTGGACGCGTCCTGATTGACGTCCAAGAAGGAATATCAATGAGCTGTGTGGGTTATCAACAGGTAAAATTTAATGTGGTTAACGTATTGAAAGATCTTAATGACTTTCAATCTTGTCAGATAAACGCAGATACCAATGAGAAGACAAGACCCACAAACGCAGCATTGAAAGATGAAATCCTCAAAAACAATGAAGATGGTGAAGAGGAAGAAATTAAATTACTCTCTAATCATATATTTGAGCAATCAGACCGGAGCAACAGATCCACGGCAAAGATCAAGCCGTTATTAGAAGAGCCTTTAACGCATGAGCTAGAAACCAGACCAACGCATCCCAAGTATGCGCACTTGAGGAAGGTCATATTGCAATTCATTGTCTCCTCTGCGTTGAACCCTGAACGCGATAAAGGCTCCAACGATCCATGCGAGTGTAATAACTGA

mRNA sequence

ATGCTTCAAAGCCAAGCCAGTACAATCAGGAATTTAGAAGTTCAATTGGGTCAAATTGCAGATGAGCTCAAGAATCAAACGCAAGGAGCATTGCTAAGTACAACCAAAGTTCCAAGAGGGAACTTAGAAGAACAATGTCAAGATGAGACATTGATACGTGGGGAAAATACCCAACCCACAATTGCGCAAAATCAGGGGACACAAGGAAACTTGCAACCCGTAAATGCTCCAACAACGAGTCAATCGATGGAGAGTACTATACATAATGTCAATCAACCATCATCATCTACCGAATCACAAGAAGAGGAAAATATAGAGCGGAGAGAAAGAGCAACGCAAGCAGAACCTGTGTCTGTATATAAAGATACCACTCCTGGACGCGTCCTGATTGACGTCCAAGAAGGAATATCAATGAGCTGTGTGGGTTATCAACAGATAAACGCAGATACCAATGAGAAGACAAGACCCACAAACGCAGCATTGAAAGATGAAATCCTCAAAAACAATGAAGATGGTGAAGAGGAAGAAATTAAATTACTCTCTAATCAGATAGATGAGCTCAAGAATCAAACGCAAGGAGCATTGCTAAGTACAACCAAAGTTCCAAGAGGGAACTTAGAAGAACAATGTCAAGATGAGACATTGATACGTGGGGAAAATACCCAACCCACAATTGCGCAAAATCAGGGGACACAAGGAAACTTGCAACCCGTAAATGCTCCAACAACGAGTCAATCGATGGAGAGTACTATACATAATGTCAATCAACCATCATCATCTACCGAATCACAAGAAGAGGAAAATATAGAGCGGAGAGAAAGAGCAACGCAAGCAGAACCTGTGTCTGTATATAAAGATACCACTCCTGGACGCGTCCTGATTGACGTCCAAGAAGGAATATCAATGAGCTGTGTGGGTTATCAACAGGTAAAATTTAATGTGGTTAACGTATTGAAAGATCTTAATGACTTTCAATCTTGTCAGATAAACGCAGATACCAATGAGAAGACAAGACCCACAAACGCAGCATTGAAAGATGAAATCCTCAAAAACAATGAAGATGGTGAAGAGGAAGAAATTAAATTACTCTCTAATCATATATTTGAGCAATCAGACCGGAGCAACAGATCCACGGCAAAGATCAAGCCGTTATTAGAAGAGCCTTTAACGCATGAGCTAGAAACCAGACCAACGCATCCCAAGTATGCGCACTTGAGGAAGGTCATATTGCAATTCATTGTCTCCTCTGCGTTGAACCCTGAACGCGATAAAGGCTCCAACGATCCATGCGAGTGTAATAACTGA

Coding sequence (CDS)

ATGCTTCAAAGCCAAGCCAGTACAATCAGGAATTTAGAAGTTCAATTGGGTCAAATTGCAGATGAGCTCAAGAATCAAACGCAAGGAGCATTGCTAAGTACAACCAAAGTTCCAAGAGGGAACTTAGAAGAACAATGTCAAGATGAGACATTGATACGTGGGGAAAATACCCAACCCACAATTGCGCAAAATCAGGGGACACAAGGAAACTTGCAACCCGTAAATGCTCCAACAACGAGTCAATCGATGGAGAGTACTATACATAATGTCAATCAACCATCATCATCTACCGAATCACAAGAAGAGGAAAATATAGAGCGGAGAGAAAGAGCAACGCAAGCAGAACCTGTGTCTGTATATAAAGATACCACTCCTGGACGCGTCCTGATTGACGTCCAAGAAGGAATATCAATGAGCTGTGTGGGTTATCAACAGATAAACGCAGATACCAATGAGAAGACAAGACCCACAAACGCAGCATTGAAAGATGAAATCCTCAAAAACAATGAAGATGGTGAAGAGGAAGAAATTAAATTACTCTCTAATCAGATAGATGAGCTCAAGAATCAAACGCAAGGAGCATTGCTAAGTACAACCAAAGTTCCAAGAGGGAACTTAGAAGAACAATGTCAAGATGAGACATTGATACGTGGGGAAAATACCCAACCCACAATTGCGCAAAATCAGGGGACACAAGGAAACTTGCAACCCGTAAATGCTCCAACAACGAGTCAATCGATGGAGAGTACTATACATAATGTCAATCAACCATCATCATCTACCGAATCACAAGAAGAGGAAAATATAGAGCGGAGAGAAAGAGCAACGCAAGCAGAACCTGTGTCTGTATATAAAGATACCACTCCTGGACGCGTCCTGATTGACGTCCAAGAAGGAATATCAATGAGCTGTGTGGGTTATCAACAGGTAAAATTTAATGTGGTTAACGTATTGAAAGATCTTAATGACTTTCAATCTTGTCAGATAAACGCAGATACCAATGAGAAGACAAGACCCACAAACGCAGCATTGAAAGATGAAATCCTCAAAAACAATGAAGATGGTGAAGAGGAAGAAATTAAATTACTCTCTAATCATATATTTGAGCAATCAGACCGGAGCAACAGATCCACGGCAAAGATCAAGCCGTTATTAGAAGAGCCTTTAACGCATGAGCTAGAAACCAGACCAACGCATCCCAAGTATGCGCACTTGAGGAAGGTCATATTGCAATTCATTGTCTCCTCTGCGTTGAACCCTGAACGCGATAAAGGCTCCAACGATCCATGCGAGTGTAATAACTGA

Protein sequence

MLQSQASTIRNLEVQLGQIADELKNQTQGALLSTTKVPRGNLEEQCQDETLIRGENTQPTIAQNQGTQGNLQPVNAPTTSQSMESTIHNVNQPSSSTESQEEENIERRERATQAEPVSVYKDTTPGRVLIDVQEGISMSCVGYQQINADTNEKTRPTNAALKDEILKNNEDGEEEEIKLLSNQIDELKNQTQGALLSTTKVPRGNLEEQCQDETLIRGENTQPTIAQNQGTQGNLQPVNAPTTSQSMESTIHNVNQPSSSTESQEEENIERRERATQAEPVSVYKDTTPGRVLIDVQEGISMSCVGYQQVKFNVVNVLKDLNDFQSCQINADTNEKTRPTNAALKDEILKNNEDGEEEEIKLLSNHIFEQSDRSNRSTAKIKPLLEEPLTHELETRPTHPKYAHLRKVILQFIVSSALNPERDKGSNDPCECNN

Homology

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BLAST of Cla002855 vs. NCBI nr
Match: gi|985458403|ref|XP_015387814.1| (PREDICTED: uncharacterized protein LOC107177842 [Citrus sinensis])

HSP 1 Score: 60.5 bits (145), Expect = 8.6e-06
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 1


Query: 1   MLQSQASTIRNLEVQLGQIADELKNQTQGALLSTTKVPRGNLEEQCQDETLIRGENTQPT 60
           ++QS   ++RNLE Q+GQ+A  L N+ QG+L S TK PR   +E C+   L  G++   +
Sbjct: 188 VVQSHIVSLRNLENQIGQLATALSNRPQGSLPSNTKNPRREGKEHCKVINLRSGKDVDNS 247

Query: 61  I-AQNQGTQGNLQPVNAPTTSQSMESTIHNVNQPSSSTESQE 102
           +    +  + N    +    ++S  ST  N NQ SS+T S E
Sbjct: 248 VGVPKRRIESNKGQKDTQVENESQSSTFQNANQYSSATASVE 289

The following BLAST results are available for this feature:

BLAST of Cla002855 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|985458403\|ref\|XP_015387814.1\|	8.6e-06	35.29	PREDICTED: uncharacterized protein LOC107177842 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002855	Cla002855.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 170..190 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002855	Wax gourd	wgowmB324
Cla002855	Melon (DHL92) v3.5.1	mewmB305
Cla002855	Melon (DHL92) v3.5.1	mewmB313
Cla002855	Watermelon (Charleston Gray)	wcgwmB405
Cla002855	Bottle gourd (USVL1VR-Ls)	lsiwmB474
Cla002855	Watermelon (97103) v2	wmwmbB106