Cla002853 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002853
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	CACTA en-spm transposon protein (AHRD V1 ***- E5GC72_CUCME); contains Interpro domain(s) IPR004252 Transposase, Ptta/En/Spm, plant
Location	Chr8 : 13878550 .. 13880082 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACATTCGGAACAGGCACAAATGGAATTGATTGAAGCTGAACATGCAAACACTCCACAAGTTGATTCTTCCACTAGGCAGGACGAGCCTAGGGAATCAGGTATTAATATGATATGTATGTTTACCTACAATATGTTATTTAAATTATCTAAAATTTATATTTCTTTTCTGATCTCAATCAATATCTAAAACGATAGGTAGGAGTGCGAGAGGACCTAGTCAGAACATAGAATTGGATAGATATGTAACTACACATGGTAAGATCAAGATTGACATTGACGATGATGTAGGAAAACCAGTATGTGCTTTTGCCACCAAGTTTGCTTTGGTCATTGGTACTTTAGTACGAAACACCATTCCATTGAATTGTGAGACTTAGACGGTTGTACCTATAGGAGTACATGAACTCATGATTGATTGGTTGGAGGTAAGTTTGTGTTTCTTTTATGCTTTTTAAGTTGTTCAATATGTAAGAGTAAACATATACTTGTATAATTGAATATGTAGGCATATTTTGAGTTTGACTCAACAAAGAGGGTTGTAAGGAAGTACTTGGAACGACAGATGCAGTCATCTTTTAGGAATATAGAGGAGACTTGACAGAGAATACTGTAAATTTGAGGACCCTGTTGAAGCTCGTGCCAATCCATCGATAAAGCTAAAGAAACCAGAAGATTGGAGTATTTTGTGTAATAGATGGGAGTCGGATGCATGGAAGGTATGTTTTTCTCAATTTAACCTATAGTTTTGTAAGAATTTGGTGTACTAATTCCCATCACTGTTTGTATTAGAAAAAACAAGAGACGAACAAAAAAAGTTGTTGCACTGTCCATTTCAACCACATAACTGGGGCAAAGTCATTCATCCAAGTTCAACATGAAGTGGTAAAGTGCAATGTAATTATTCTTTATACCATCATCTCATATTTTTATGACTAATCTTAATTCTATTCTTTTTATAGAAAAAAAAAGGTGGCGACGTTGATGAGGTAGAGTTGTTCCACGAAAGTCATTTTCGTGAAAATGGAGGATGGATCAATGATAAGGCGAGAGATGCATATGTAAGTTTTATTATCATGACATGGTGAATTCATATATTATTTAACACATTCAATCTAACTAGGTCTTTCATATAGTTGAAAATGCAAATAATTCTTGAAGCATCAACTAAAGATGGTGTCCAAACAATCTCAAGTGCAAAAATGTGCAAGAAGGTATTGGGTAGTCGATCAGCCTTGGTTTGGGACCCAAAATCAATAGCATCACCAACTAATGATGTGTTTTTTGCACATGACAAAGAGGAGAAGACAAAGATGATAGATGAACTAACTTGTGTGAAGGAAAAATACGCAAAGATGGTAGAACAAAATGAGAAGTTAATTAGTCAACTTTCAAAATAGGAAGATAGATAGTTCGACTTTAAAAAATTGTTGAGGCAAGGACATGGAGAGGGATGAACCTTCAAATACTTGGGTATTTTTTTTAAATTAAAGTTCAAAATTATGCTGTGGCTATTCTGCAGTTATGGTAG

mRNA sequence

ATGGTACATTCGGAACAGGCACAAATGGAATTGATTGAAGCTGAACATGCAAACACTCCACAAGTTGATTCTTCCACTAGGCAGGACGAGCCTAGGGAATCAGCTCGTGCCAATCCATCGATAAAGCTAAAGAAACCAGAAGATTGGAGTATTTTGTGTAATAGATGGGAGTCGGATGCATGGAAGAAAAAACAAGAGACGAACAAAAAAAGTTGTTGCACTGTCCATTTCAACCACATAACTGGGGCAAAGTCATTCATCCAAGTTCAACATGAAGTGAAAAAAAAAGGTGGCGACGTTGATGAGGTAGAGTTGTTCCACGAAAGTCATTTTCGTGAAAATGGAGGATGGATCAATGATAAGGCGAGAGATGCATATTTATGGTAG

Coding sequence (CDS)

ATGGTACATTCGGAACAGGCACAAATGGAATTGATTGAAGCTGAACATGCAAACACTCCACAAGTTGATTCTTCCACTAGGCAGGACGAGCCTAGGGAATCAGCTCGTGCCAATCCATCGATAAAGCTAAAGAAACCAGAAGATTGGAGTATTTTGTGTAATAGATGGGAGTCGGATGCATGGAAGAAAAAACAAGAGACGAACAAAAAAAGTTGTTGCACTGTCCATTTCAACCACATAACTGGGGCAAAGTCATTCATCCAAGTTCAACATGAAGTGAAAAAAAAAGGTGGCGACGTTGATGAGGTAGAGTTGTTCCACGAAAGTCATTTTCGTGAAAATGGAGGATGGATCAATGATAAGGCGAGAGATGCATATTTATGGTAG

Protein sequence

MVHSEQAQMELIEAEHANTPQVDSSTRQDEPRESARANPSIKLKKPEDWSILCNRWESDAWKKKQETNKKSCCTVHFNHITGAKSFIQVQHEVKKKGGDVDEVELFHESHFRENGGWINDKARDAYLW

Homology

[Close]

BLAST of Cla002853 vs. TrEMBL
Match: E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-07
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1


Query: 33  ESARANPSIKLK-KPEDWSILCNRWESDAWKKKQETNKKSCCTVHFNHITGAKSFIQVQH 92
           E ARANP   L  + EDW  L + +   A++++  TNK +     +NH +G+KSF+Q Q+
Sbjct: 156 EEARANPPNALVGRDEDWHFLYDHYIRRAFQEQSWTNKAARQKQPYNHSSGSKSFLQRQY 215

Query: 93  EV-KKKGGDVDEVELFHESHFRENGGWINDKARDAY 127
           E+ ++KG  VD VELF E+H R  G +++  A DA+
Sbjct: 216 ELAERKGEPVDCVELFRETHVRA-GTFMSQAAEDAH 250

[Close]

BLAST of Cla002853 vs. NCBI nr
Match: gi|307136235|gb|ADN34071.1| (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 63.5 bits (153), Expect = 3.0e-07
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1


Query: 33  ESARANPSIKLK-KPEDWSILCNRWESDAWKKKQETNKKSCCTVHFNHITGAKSFIQVQH 92
           E ARANP   L  + EDW  L + +   A++++  TNK +     +NH +G+KSF+Q Q+
Sbjct: 156 EEARANPPNALVGRDEDWHFLYDHYIRRAFQEQSWTNKAARQKQPYNHSSGSKSFLQRQY 215

Query: 93  EV-KKKGGDVDEVELFHESHFRENGGWINDKARDAY 127
           E+ ++KG  VD VELF E+H R  G +++  A DA+
Sbjct: 216 ELAERKGEPVDCVELFRETHVRA-GTFMSQAAEDAH 250

[Close]

BLAST of Cla002853 vs. NCBI nr
Match: gi|731427383|ref|XP_010663961.1| (PREDICTED: uncharacterized protein LOC100261419 [Vitis vinifera])

HSP 1 Score: 62.8 bits (151), Expect = 5.1e-07
Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1


Query: 27  RQDEPRESARANPSIKLKKPEDWSILCNRWESDAWKKKQETNKKSCCTVHFNHITGAKSF 86
           +Q E  E AR +P   + + EDW  LCN +  + +KK+   N ++   + FNH  G+K F
Sbjct: 198 KQFETVEEARLHPPDDVTQ-EDWDYLCNLFSLEKFKKRATINSENREKLPFNHRGGSKPF 257

Query: 87  I--QVQHEVKKKGGDVD-EVELFHESHFRENGGWINDKARDAY 127
              +  + +    G++  EVELF  +H+ E+ GWIND A+  Y
Sbjct: 258 AFHRQHNSMSVATGELQGEVELFRATHYNESKGWINDTAKSRY 299

[Close]

BLAST of Cla002853 vs. NCBI nr
Match: gi|731401583|ref|XP_010654339.1| (PREDICTED: uncharacterized protein LOC100854636 [Vitis vinifera])

HSP 1 Score: 59.7 bits (143), Expect = 4.3e-06
Identity = 35/103 (33.98%), Postives = 56/103 (54.37%), Query Frame = 1


Query: 27  RQDEPRESARANPSIKLKKPEDWSILCNRWESDAWKKKQETNKKSCCTVHFNHITGAKSF 86
           +Q E  E A  +P   + + EDW  LCN +  + +KK+   N ++   + FNH  G+K F
Sbjct: 132 KQFETVEEACLHPPDDVTQ-EDWDYLCNLFSLEKFKKRATINSENREKLPFNHRGGSKPF 191

Query: 87  I--QVQHEVKKKGGDVD-EVELFHESHFRENGGWINDKARDAY 127
              +  + +    G++  EVELF  +H+ E+ GWIND A+  Y
Sbjct: 192 AFHRQHNSMSVATGELQGEVELFRATHYNESKGWINDTAKSRY 233

The following BLAST results are available for this feature:

BLAST of Cla002853 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GC72_CUCME	2.1e-07	40.63	CACTA en-spm transposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla002853 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136235\|gb\|ADN34071.1\|	3.0e-07	40.63	CACTA en-spm transposon protein [Cucumis melo subsp. melo]	[more]
gi\|731427383\|ref\|XP_010663961.1\|	5.1e-07	34.95	PREDICTED: uncharacterized protein LOC100261419 [Vitis vinifera]	[more]
gi\|731401583\|ref\|XP_010654339.1\|	4.3e-06	33.98	PREDICTED: uncharacterized protein LOC100854636 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004252	Probable_transposase_24

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002853	Cla002853.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004252	Probable transposase, Ptta/En/Spm, plant	PFAM	PF03004	Transposase_24	coord: 46..126 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002853	Melon (DHL92) v3.5.1	mewmB305
Cla002853	Melon (DHL92) v3.5.1	mewmB313
Cla002853	Watermelon (Charleston Gray)	wcgwmB405
Cla002853	Bottle gourd (USVL1VR-Ls)	lsiwmB474
Cla002853	Watermelon (97103) v2	wmwmbB106
Cla002853	Wax gourd	wgowmB324