Cla002848 (gene) Watermelon (97103) v1

Overview
NameCla002848
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr8 : 13692137 .. 13692436 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACGCCTACAGACGCCGAAATGAATGACGCCCTCACAATCATCGCCAAACCAGGGTCAGAGTGGAACACTTCCCCAAATGGCATTCAGTCATTAGCACCTAACTGCTTGATCGCCGAGGCCAACCTGTGGCTTTATTTCATCAAGCGGTCACTGCTCCCTACAACGCATGACGCCTCAATTTCAAGGAACTGTGCCATGGTCATTTACTGCATCATGCGGGGAATTGGGACGCATCATTGCCCCAGCATCATTGCCCCACAGATACGGGGGCTGTTCTTCAAGCCAAGGGGTTAG

mRNA sequence

ATGTCGACGCCTACAGACGCCGAAATGAATGACGCCCTCACAATCATCGCCAAACCAGGGTCAGAGTGGAACACTTCCCCAAATGGCATTCAGTCATTAGCACCTAACTGCTTGATCGCCGAGGCCAACCTGTGGCTTTATTTCATCAAGCGGTCACTGCTCCCTACAACGCATGACGCCTCAATTTCAAGGAACTGTGCCATGGTCATTTACTGCATCATGCGGGGAATTGGGACGCATCATTGCCCCAGCATCATTGCCCCACAGATACGGGGGCTGTTCTTCAAGCCAAGGGGTTAG

Coding sequence (CDS)

ATGTCGACGCCTACAGACGCCGAAATGAATGACGCCCTCACAATCATCGCCAAACCAGGGTCAGAGTGGAACACTTCCCCAAATGGCATTCAGTCATTAGCACCTAACTGCTTGATCGCCGAGGCCAACCTGTGGCTTTATTTCATCAAGCGGTCACTGCTCCCTACAACGCATGACGCCTCAATTTCAAGGAACTGTGCCATGGTCATTTACTGCATCATGCGGGGAATTGGGACGCATCATTGCCCCAGCATCATTGCCCCACAGATACGGGGGCTGTTCTTCAAGCCAAGGGGTTAG

Protein sequence

MSTPTDAEMNDALTIIAKPGSEWNTSPNGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDASISRNCAMVIYCIMRGIGTHHCPSIIAPQIRGLFFKPRG
Homology
[Close]
BLAST of Cla002848 vs. TrEMBL
Match: A0A0A0L2P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-06
Identity = 27/77 (35.06%), Postives = 44/77 (57.14%), Query Frame = 1 

Query: 1  MSTPTDAEMNDALTIIAKPGSEWNTSPNGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDA 60
          +  P   ++  AL  +  P +  + +P G   L P+ L  EA +WL F+K+ ++PT HD 
Sbjct: 10 LKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDN 69

Query: 61 SISRNCAMVIYCIMRGI 78
          +IS    M++YCIM+ I
Sbjct: 70 NISMERVMLVYCIMKEI 86

[Close]
BLAST of Cla002848 vs. NCBI nr
Match: gi|700199714|gb|KGN54872.1| (hypothetical protein Csa_4G569710 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 4.4e-06
Identity = 27/77 (35.06%), Postives = 44/77 (57.14%), Query Frame = 1 

Query: 1  MSTPTDAEMNDALTIIAKPGSEWNTSPNGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDA 60
          +  P   ++  AL  +  P +  + +P G   L P+ L  EA +WL F+K+ ++PT HD 
Sbjct: 10 LKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDN 69

Query: 61 SISRNCAMVIYCIMRGI 78
          +IS    M++YCIM+ I
Sbjct: 70 NISMERVMLVYCIMKEI 86

The following BLAST results are available for this feature:
BLAST of Cla002848 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2P0_CUCSA3.0e-0635.06Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1[more]
BLAST of Cla002848 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199714|gb|KGN54872.1|4.4e-0635.06hypothetical protein Csa_4G569710 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002848Cla002848.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla002848Watermelon (97103) v2wmwmbB106
Cla002848Wax gourdwgowmB324
Cla002848Melon (DHL92) v3.5.1mewmB305
Cla002848Melon (DHL92) v3.5.1mewmB313
Cla002848Watermelon (Charleston Gray)wcgwmB405
Cla002848Bottle gourd (USVL1VR-Ls)lsiwmB474