Cla002847 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002847
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Cell division cycle protein 48-like protein (AHRD V1 ***- F4IAE9_ARATH)
Location	Chr8 : 13679892 .. 13681044 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCCAAAGCAAACTGGTTTGGGGGATGGACCAGTCTCCAGCCCACTACGCACAAGTGCTCGACCAAGGAGGAGGCCAATATCATATGGTCGTCCATATGTATATTATGGTTCTTCTGCAACCTTCAAACCCAACAAGAAAAGAACCCCAGCTACTAGAATTGCCAAGATGCTCCGTCCAAAGAAGCAACCCATGCCAACTGCTAATGCTGTTGTGAGAACTATATCTTATATCTTATATCAATTCCAAAGGTCTTATGGGCAAGACGTTGATTATAGCAAGGATAAATACTAGTTTAAAAATTATTCTCTAGGACACGATTCTTGATTTTTCTACATAGGAACTGTTTAGATGTAATAACATAGGACACTCTTTGTAATGAAATAGTATTTAAAAAATATGGCTAGACAGCAACAAGAACATTTGATAGCTGAATGTATTTATAATTTCTTACATTGAAGTCTGACTGAAGAGCCTTTTTTATATTCTTGGTTGCTTGGAGAGACATATGCTTTTTCCCTTTTATATATTTGTTATCTTCTAACGAACAATTGGATTAAGAGTTTTTAGATAAGGTTGTAAGAAATAAAGGATTTGGGAAGAGAATTTGGATGGATACAATTAACAAAATGCTGGAAAAAGGCTGATAAACGGTATAAATGTGAAGTTCGAAAAGGGGTCACGGTTTTTGTTTTTTTTTTTAGGAAGATCAGTGGTTCTTAGATATTCAGCTCAAATTTGTATATCCTAGGCTCTTCATGCTGGTCATTCTCTTCTGTTGGCTGGGACCTCAAATTTAGAAGGAACGGTACCAATTAGGAGATTGAGGGCAGGAGTGGGCTGCCCTCCTTAGTTGGCTCACAAATTTCAGCTTTAGTTACAGGAAAAAATGGACTCTTGAAAAAAGGGTGATTATTCTGTGAAGTCCAGGGACAGCAAGCTAAGTGAAATCTCTGAAGATATCATCAGCCCCTTTGTTAACCTCATCTTGAAGTCTATGATTCCTTAGGATAAATACCTACAACTGATGATAGAGAAGAATGCCAAACTGGTCTTGGACTCCTTCTTGGTGGGTGTTGTGCATAAAGGATGGGGAAGACAGTCAACACTTGTTCTTCTTCTGCTCTTATGCTGCGGTGGCTTGGAATAA

mRNA sequence

ATGTATCCAAAGCAAACTGGTTTGGGGGATGGACCAGTCTCCAGCCCACTACGCACAAGTGCTCGACCAAGGAGGAGGCCAATATCATATGGTCGTCCATATGTATATTATGGTTCTTCTGCAACCTTCAAACCCAACAAGAAAAGAACCCCAGCTACTAGAATTGCCAAGATGCTCCGTCCAAAGAAGCAACCCATGCCAACTGCTAATGCTGTTGATAAATACCTACAACTGATGATAGAGAAGAATGCCAAACTGGTCTTGGACTCCTTCTTGGTGGGTGTTGTGCATAAAGGATGGGGAAGACAGTCAACACTTGTTCTTCTTCTGCTCTTATGCTGCGGTGGCTTGGAATAA

Coding sequence (CDS)

ATGTATCCAAAGCAAACTGGTTTGGGGGATGGACCAGTCTCCAGCCCACTACGCACAAGTGCTCGACCAAGGAGGAGGCCAATATCATATGGTCGTCCATATGTATATTATGGTTCTTCTGCAACCTTCAAACCCAACAAGAAAAGAACCCCAGCTACTAGAATTGCCAAGATGCTCCGTCCAAAGAAGCAACCCATGCCAACTGCTAATGCTGTTGATAAATACCTACAACTGATGATAGAGAAGAATGCCAAACTGGTCTTGGACTCCTTCTTGGTGGGTGTTGTGCATAAAGGATGGGGAAGACAGTCAACACTTGTTCTTCTTCTGCTCTTATGCTGCGGTGGCTTGGAATAA

Protein sequence

MYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYYGSSATFKPNKKRTPATRIAKMLRPKKQPMPTANAVDKYLQLMIEKNAKLVLDSFLVGVVHKGWGRQSTLVLLLLLCCGGLE

Homology

[Close]

BLAST of Cla002847 vs. Swiss-Prot
Match: Y1591_ARATH (ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana GN=At1g05910 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-09
Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = 1


Query: 1  MYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYYGSSATF----KPNKKRTPATRIA 60
          M+PK++  GDG V+ P+RTS R RRRP  +GR Y+YY S        +  K RT A++IA
Sbjct: 1  MHPKRSSQGDGSVTKPVRTSDRLRRRPKLHGRSYLYYSSPNMLHNRKRNTKTRTAASQIA 60

Query: 61 KMLRPKKQPMPTANA 72
          KML    +P   +NA
Sbjct: 61 KMLHKGNRPARASNA 75

[Close]

BLAST of Cla002847 vs. TrEMBL
Match: A0A0A0KB13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G042330 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 1  MYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYYGSSATFKPNKKRTPATRIAKMLR 60
          MYPKQTGLGDGPVSSPLRTSARPR+RPISYGRPYVYYGSSATFKPNKKRTPA RIAK+LR
Sbjct: 1  MYPKQTGLGDGPVSSPLRTSARPRKRPISYGRPYVYYGSSATFKPNKKRTPAVRIAKLLR 60

Query: 61 PKKQPMPTANAV 73
          PKKQ MPTANAV
Sbjct: 61 PKKQSMPTANAV 72

[Close]

BLAST of Cla002847 vs. TrEMBL
Match: A0A061EJ09_THECC (Cell division cycle protein 48-related / CDC48-related isoform 2 OS=Theobroma cacao GN=TCM_020130 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.9e-11
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = 1


Query: 1  MYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYYGSS---ATFKPNKKRTPATRIAK 60
          MY K++G GDGPVS P+RTS R RRRP  YGRPY+YY  +         K RT A+RIAK
Sbjct: 1  MYSKRSGQGDGPVSRPVRTSDRLRRRPKVYGRPYLYYTPTIIRTRKSKTKTRTAASRIAK 60

Query: 61 MLRPKKQPMPTAN 71
          MLR   +P+ T+N
Sbjct: 61 MLRSGDRPVRTSN 73

[Close]

BLAST of Cla002847 vs. TrEMBL
Match: A0A061EJG5_THECC (Cell division cycle protein 48-related / CDC48-related isoform 3 OS=Theobroma cacao GN=TCM_020130 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.9e-11
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = 1


Query: 1  MYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYYGSS---ATFKPNKKRTPATRIAK 60
          MY K++G GDGPVS P+RTS R RRRP  YGRPY+YY  +         K RT A+RIAK
Sbjct: 1  MYSKRSGQGDGPVSRPVRTSDRLRRRPKVYGRPYLYYTPTIIRTRKSKTKTRTAASRIAK 60

Query: 61 MLRPKKQPMPTAN 71
          MLR   +P+ T+N
Sbjct: 61 MLRSGDRPVRTSN 73

[Close]

BLAST of Cla002847 vs. TrEMBL
Match: A0A061ERQ8_THECC (Cell division cycle protein 48-related / CDC48-related isoform 1 OS=Theobroma cacao GN=TCM_020130 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.9e-11
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = 1


Query: 1  MYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYYGSS---ATFKPNKKRTPATRIAK 60
          MY K++G GDGPVS P+RTS R RRRP  YGRPY+YY  +         K RT A+RIAK
Sbjct: 1  MYSKRSGQGDGPVSRPVRTSDRLRRRPKVYGRPYLYYTPTIIRTRKSKTKTRTAASRIAK 60

Query: 61 MLRPKKQPMPTAN 71
          MLR   +P+ T+N
Sbjct: 61 MLRSGDRPVRTSN 73

[Close]

BLAST of Cla002847 vs. TrEMBL
Match: A0A068UT47_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033770001 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.1e-10
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1


Query: 1  MYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYYGSSATFKPNKKRT---PATRIAK 60
          MY K++   DGP S P+RTS R RRRP  YGRPY+YY +    +P +++T    A++IAK
Sbjct: 1  MYSKRSSQDDGPDSKPVRTSDRLRRRPKLYGRPYLYY-TPTIIRPKRRKTKTKTASQIAK 60

Query: 61 MLRPKKQPMPTANA 72
          MLRP  +P+ T+NA
Sbjct: 61 MLRPGNRPVHTSNA 73

[Close]

BLAST of Cla002847 vs. NCBI nr
Match: gi|778710256|ref|XP_011656547.1| (PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.6e-31
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 1  MYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYYGSSATFKPNKKRTPATRIAKMLR 60
          MYPKQTGLGDGPVSSPLRTSARPR+RPISYGRPYVYYGSSATFKPNKKRTPA RIAK+LR
Sbjct: 1  MYPKQTGLGDGPVSSPLRTSARPRKRPISYGRPYVYYGSSATFKPNKKRTPAVRIAKLLR 60

Query: 61 PKKQPMPTANAV 73
          PKKQ MPTANAV
Sbjct: 61 PKKQSMPTANAV 72

[Close]

BLAST of Cla002847 vs. NCBI nr
Match: gi|778710263|ref|XP_011656549.1| (PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X2 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.6e-31
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 1  MYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYYGSSATFKPNKKRTPATRIAKMLR 60
          MYPKQTGLGDGPVSSPLRTSARPR+RPISYGRPYVYYGSSATFKPNKKRTPA RIAK+LR
Sbjct: 1  MYPKQTGLGDGPVSSPLRTSARPRKRPISYGRPYVYYGSSATFKPNKKRTPAVRIAKLLR 60

Query: 61 PKKQPMPTANAV 73
          PKKQ MPTANAV
Sbjct: 61 PKKQSMPTANAV 72

[Close]

BLAST of Cla002847 vs. NCBI nr
Match: gi|778710267|ref|XP_011656550.1| (PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X3 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.6e-31
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 1  MYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYYGSSATFKPNKKRTPATRIAKMLR 60
          MYPKQTGLGDGPVSSPLRTSARPR+RPISYGRPYVYYGSSATFKPNKKRTPA RIAK+LR
Sbjct: 1  MYPKQTGLGDGPVSSPLRTSARPRKRPISYGRPYVYYGSSATFKPNKKRTPAVRIAKLLR 60

Query: 61 PKKQPMPTANAV 73
          PKKQ MPTANAV
Sbjct: 61 PKKQSMPTANAV 72

[Close]

BLAST of Cla002847 vs. NCBI nr
Match: gi|659089880|ref|XP_008445730.1| (PREDICTED: LOW QUALITY PROTEIN: ATPase family AAA domain-containing protein At1g05910 [Cucumis melo])

HSP 1 Score: 140.2 bits (352), Expect = 2.3e-30
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 1  MYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYYGSSATFKPNKKRTPATRIAKMLR 60
          MYPKQTGLGDGPVSSPLRTSARPR+RPISYGRPYVYYGSSATFKP+K RTPA RIAK+LR
Sbjct: 1  MYPKQTGLGDGPVSSPLRTSARPRKRPISYGRPYVYYGSSATFKPSKNRTPAVRIAKLLR 60

Query: 61 PKKQPMPTANAV 73
          PKKQ MPTANAV
Sbjct: 61 PKKQSMPTANAV 72

[Close]

BLAST of Cla002847 vs. NCBI nr
Match: gi|590655778|ref|XP_007034083.1| (Cell division cycle protein 48-related / CDC48-related isoform 1 [Theobroma cacao])

HSP 1 Score: 75.5 bits (184), Expect = 7.0e-11
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = 1


Query: 1  MYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYYGSS---ATFKPNKKRTPATRIAK 60
          MY K++G GDGPVS P+RTS R RRRP  YGRPY+YY  +         K RT A+RIAK
Sbjct: 1  MYSKRSGQGDGPVSRPVRTSDRLRRRPKVYGRPYLYYTPTIIRTRKSKTKTRTAASRIAK 60

Query: 61 MLRPKKQPMPTAN 71
          MLR   +P+ T+N
Sbjct: 61 MLRSGDRPVRTSN 73

The following BLAST results are available for this feature:

BLAST of Cla002847 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1591_ARATH	1.7e-09	45.33	ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cla002847 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB13_CUCSA	1.1e-31	94.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G042330 PE=4 SV=1	[more]
A0A061EJ09_THECC	4.9e-11	54.79	Cell division cycle protein 48-related / CDC48-related isoform 2 OS=Theobroma ca...	[more]
A0A061EJG5_THECC	4.9e-11	54.79	Cell division cycle protein 48-related / CDC48-related isoform 3 OS=Theobroma ca...	[more]
A0A061ERQ8_THECC	4.9e-11	54.79	Cell division cycle protein 48-related / CDC48-related isoform 1 OS=Theobroma ca...	[more]
A0A068UT47_COFCA	7.1e-10	50.00	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033770001 PE=4 SV=1	[more]

BLAST of Cla002847 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778710256\|ref\|XP_011656547.1\|	1.6e-31	94.44	PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Cuc...	[more]
gi\|778710263\|ref\|XP_011656549.1\|	1.6e-31	94.44	PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X2 [Cuc...	[more]
gi\|778710267\|ref\|XP_011656550.1\|	1.6e-31	94.44	PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X3 [Cuc...	[more]
gi\|659089880\|ref\|XP_008445730.1\|	2.3e-30	91.67	PREDICTED: LOW QUALITY PROTEIN: ATPase family AAA domain-containing protein At1g...	[more]
gi\|590655778\|ref\|XP_007034083.1\|	7.0e-11	54.79	Cell division cycle protein 48-related / CDC48-related isoform 1 [Theobroma caca...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002847	Cla002847.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002847	Watermelon (97103) v2	wmwmbB106
Cla002847	Wax gourd	wgowmB324
Cla002847	Melon (DHL92) v3.5.1	mewmB305
Cla002847	Melon (DHL92) v3.5.1	mewmB313
Cla002847	Watermelon (Charleston Gray)	wcgwmB405
Cla002847	Bottle gourd (USVL1VR-Ls)	lsiwmB474