Cla002839 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002839
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Aluminum-induced protein-like (AHRD V1 ***- Q9FG81_ARATH)
Location	Chr8 : 13465998 .. 13466249 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGCCGTCTTCGACAAATCGGTGGCCAAAAGTCCCGACGCTCTGCAGAGCCCTGAGTCCGATTCCGTTTACGCTCTGAAAGATGGAATTCTGGCCCACCATTTTAGCTCCGTCTACCCTGGTTCTGTCATCGTCAACCTCGGCTCCGCCGGTCTCTTGGCCTATTCCGTCGAAAAGCAAAACCCTCTCCTCCCTAGGTATTACGATTACCTTTCATCTTCTTCTGCAATGTTTTCGGGAATACTCTAA

mRNA sequence

ATGCTCGCCGTCTTCGACAAATCGGTGGCCAAAAGTCCCGACGCTCTGCAGAGCCCTGAGTCCGATTCCGTTTACGCTCTGAAAGATGGAATTCTGGCCCACCATTTTAGCTCCGTCTACCCTGGTTCTGTCATCGTCAACCTCGGCTCCGCCGGTCTCTTGGCCTATTCCGTCGAAAAGCAAAACCCTCTCCTCCCTAGGTATTACGATTACCTTTCATCTTCTTCTGCAATGTTTTCGGGAATACTCTAA

Coding sequence (CDS)

ATGCTCGCCGTCTTCGACAAATCGGTGGCCAAAAGTCCCGACGCTCTGCAGAGCCCTGAGTCCGATTCCGTTTACGCTCTGAAAGATGGAATTCTGGCCCACCATTTTAGCTCCGTCTACCCTGGTTCTGTCATCGTCAACCTCGGCTCCGCCGGTCTCTTGGCCTATTCCGTCGAAAAGCAAAACCCTCTCCTCCCTAGGTATTACGATTACCTTTCATCTTCTTCTGCAATGTTTTCGGGAATACTCTAA

Protein sequence

MLAVFDKSVAKSPDALQSPESDSVYALKDGILAHHFSSVYPGSVIVNLGSAGLLAYSVEKQNPLLPRYYDYLSSSSAMFSGIL

Homology

[Close]

BLAST of Cla002839 vs. TrEMBL
Match: A0A0A0L7D3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G145760 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-26
Identity = 63/81 (77.78%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 1  MLAVFDKSVAKSPDALQSPESDSVYALKDGILAHHFSSVYPGSVIVNLGSAGLLAYSVEK 60
          M AVFDKSVAKSPDALQSPESDS +ALKDGILA HFSSVYPGSVIVNLGS+GLLAYSVEK
Sbjct: 1  MFAVFDKSVAKSPDALQSPESDSTWALKDGILAQHFSSVYPGSVIVNLGSSGLLAYSVEK 60

Query: 61 QNPLLPRYYDYLSSSSAMFSG 82
          QNP+LPR +  +     +F G
Sbjct: 61 QNPILPRLFAVVDDIFCLFQG 81

[Close]

BLAST of Cla002839 vs. TrEMBL
Match: I3SRP3_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.0e-23
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 1


Query: 1  MLAVFDKSVAKSPDALQSPESDSVYALKDGILAHHFSSVYPGSVIVNLGSAGLLAYSVEK 60
          MLAVFDKSVAK P+ALQSP+S+SV ALKDG LA HFSSVYPGSVIVNLG++G LAYS+ K
Sbjct: 1  MLAVFDKSVAKGPEALQSPQSNSVSALKDGFLAQHFSSVYPGSVIVNLGTSGTLAYSLHK 60

Query: 61 QNPLLPRYYDYLSSSSAMFSG 82
          QNPLLPR +  +     +F G
Sbjct: 61 QNPLLPRLFAVVDDIFCLFQG 81

[Close]

BLAST of Cla002839 vs. TrEMBL
Match: A0A0B2P507_GLYSO (Stem-specific protein TSJT1 OS=Glycine soja GN=glysoja_016000 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.7e-23
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 1


Query: 1  MLAVFDKSVAKSPDALQSPESDSVYALKDGILAHHFSSVYPGSVIVNLGSAGLLAYSVEK 60
          MLAVFDKSVAKSP+ LQSP S+SV ALKDG LA HFSSV+PGSV VNLGS+GLLAYS+ K
Sbjct: 1  MLAVFDKSVAKSPEGLQSPHSNSVSALKDGFLAEHFSSVHPGSVTVNLGSSGLLAYSLHK 60

Query: 61 QNPLLPRYYDYLSSSSAMFSGIL 84
          QNPLLPR +  +     +F G L
Sbjct: 61 QNPLLPRLFAVVDDIFCLFQGHL 83

[Close]

BLAST of Cla002839 vs. TrEMBL
Match: C6T2Q6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.7e-23
Identity = 57/83 (68.67%), Postives = 66/83 (79.52%), Query Frame = 1


Query: 1  MLAVFDKSVAKSPDALQSPESDSVYALKDGILAHHFSSVYPGSVIVNLGSAGLLAYSVEK 60
          MLAVFDKSVAKSP+ LQSP SDSV ALKDG +A HFSSV+PGSV VNLGS+GLLAYS+ +
Sbjct: 1  MLAVFDKSVAKSPEGLQSPHSDSVSALKDGFIAEHFSSVHPGSVTVNLGSSGLLAYSLHR 60

Query: 61 QNPLLPRYYDYLSSSSAMFSGIL 84
          QNPLLPR +  +     +F G L
Sbjct: 61 QNPLLPRLFAVVDDIFCLFQGHL 83

[Close]

BLAST of Cla002839 vs. TrEMBL
Match: I1LDZ4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G243300 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.7e-23
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 1


Query: 1  MLAVFDKSVAKSPDALQSPESDSVYALKDGILAHHFSSVYPGSVIVNLGSAGLLAYSVEK 60
          MLAVFDKSVAKSP+ LQSP S+SV ALKDG LA HFSSV+PGSV VNLGS+GLLAYS+ K
Sbjct: 1  MLAVFDKSVAKSPEGLQSPHSNSVSALKDGFLAEHFSSVHPGSVTVNLGSSGLLAYSLHK 60

Query: 61 QNPLLPRYYDYLSSSSAMFSGIL 84
          QNPLLPR +  +     +F G L
Sbjct: 61 QNPLLPRLFAVVDDIFCLFQGHL 83

[Close]

BLAST of Cla002839 vs. NCBI nr
Match: gi|659076313|ref|XP_008438612.1| (PREDICTED: stem-specific protein TSJT1 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-26
Identity = 64/81 (79.01%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 1  MLAVFDKSVAKSPDALQSPESDSVYALKDGILAHHFSSVYPGSVIVNLGSAGLLAYSVEK 60
          MLAVF+KSVAKSPDALQSPESDS +ALKDGILA HFSS YPGSVIVNLGSAGLLAYSVEK
Sbjct: 1  MLAVFEKSVAKSPDALQSPESDSTWALKDGILAQHFSSAYPGSVIVNLGSAGLLAYSVEK 60

Query: 61 QNPLLPRYYDYLSSSSAMFSG 82
          QNPLLPR +  +     +F G
Sbjct: 61 QNPLLPRLFAVVDDIFCLFQG 81

[Close]

BLAST of Cla002839 vs. NCBI nr
Match: gi|449432660|ref|XP_004134117.1| (PREDICTED: stem-specific protein TSJT1 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 63/81 (77.78%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 1  MLAVFDKSVAKSPDALQSPESDSVYALKDGILAHHFSSVYPGSVIVNLGSAGLLAYSVEK 60
          M AVFDKSVAKSPDALQSPESDS +ALKDGILA HFSSVYPGSVIVNLGS+GLLAYSVEK
Sbjct: 1  MFAVFDKSVAKSPDALQSPESDSTWALKDGILAQHFSSVYPGSVIVNLGSSGLLAYSVEK 60

Query: 61 QNPLLPRYYDYLSSSSAMFSG 82
          QNP+LPR +  +     +F G
Sbjct: 61 QNPILPRLFAVVDDIFCLFQG 81

[Close]

BLAST of Cla002839 vs. NCBI nr
Match: gi|388509738|gb|AFK42935.1| (unknown [Lotus japonicus])

HSP 1 Score: 115.5 bits (288), Expect = 4.3e-23
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 1


Query: 1  MLAVFDKSVAKSPDALQSPESDSVYALKDGILAHHFSSVYPGSVIVNLGSAGLLAYSVEK 60
          MLAVFDKSVAK P+ALQSP+S+SV ALKDG LA HFSSVYPGSVIVNLG++G LAYS+ K
Sbjct: 1  MLAVFDKSVAKGPEALQSPQSNSVSALKDGFLAQHFSSVYPGSVIVNLGTSGTLAYSLHK 60

Query: 61 QNPLLPRYYDYLSSSSAMFSG 82
          QNPLLPR +  +     +F G
Sbjct: 61 QNPLLPRLFAVVDDIFCLFQG 81

[Close]

BLAST of Cla002839 vs. NCBI nr
Match: gi|1012243518|ref|XP_015941538.1| (PREDICTED: stem-specific protein TSJT1-like [Arachis duranensis])

HSP 1 Score: 114.8 bits (286), Expect = 7.4e-23
Identity = 57/83 (68.67%), Postives = 69/83 (83.13%), Query Frame = 1


Query: 1  MLAVFDKSVAKSPDALQSPESDSVYALKDGILAHHFSSVYPGSVIVNLGSAGLLAYSVEK 60
          MLAVF+KSVAKSP+ALQSP+S+SV +LKDG LA HFSSV+PGSV VNLGS+GLLAYS+E+
Sbjct: 1  MLAVFEKSVAKSPEALQSPQSNSVSSLKDGFLAQHFSSVHPGSVTVNLGSSGLLAYSLER 60

Query: 61 QNPLLPRYYDYLSSSSAMFSGIL 84
          QNPLLPR +  +     +F G L
Sbjct: 61 QNPLLPRLFAVVDDIFCLFQGHL 83

[Close]

BLAST of Cla002839 vs. NCBI nr
Match: gi|1021566294|ref|XP_016174419.1| (PREDICTED: stem-specific protein TSJT1 [Arachis ipaensis])

HSP 1 Score: 114.8 bits (286), Expect = 7.4e-23
Identity = 57/83 (68.67%), Postives = 69/83 (83.13%), Query Frame = 1


Query: 1  MLAVFDKSVAKSPDALQSPESDSVYALKDGILAHHFSSVYPGSVIVNLGSAGLLAYSVEK 60
          MLAVF+KSVAKSP+ALQSP+S+SV +LKDG LA HFSSV+PGSV VNLGS+GLLAYS+E+
Sbjct: 1  MLAVFEKSVAKSPEALQSPQSNSVSSLKDGFLAQHFSSVHPGSVTVNLGSSGLLAYSLER 60

Query: 61 QNPLLPRYYDYLSSSSAMFSGIL 84
          QNPLLPR +  +     +F G L
Sbjct: 61 QNPLLPRLFAVVDDIFCLFQGHL 83

The following BLAST results are available for this feature:

BLAST of Cla002839 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7D3_CUCSA	1.0e-26	77.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G145760 PE=4 SV=1	[more]
I3SRP3_LOTJA	3.0e-23	70.37	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A0B2P507_GLYSO	6.7e-23	69.88	Stem-specific protein TSJT1 OS=Glycine soja GN=glysoja_016000 PE=4 SV=1	[more]
C6T2Q6_SOYBN	6.7e-23	68.67	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
I1LDZ4_SOYBN	6.7e-23	69.88	Uncharacterized protein OS=Glycine max GN=GLYMA_10G243300 PE=4 SV=1	[more]

BLAST of Cla002839 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076313\|ref\|XP_008438612.1\|	1.1e-26	79.01	PREDICTED: stem-specific protein TSJT1 [Cucumis melo]	[more]
gi\|449432660\|ref\|XP_004134117.1\|	1.4e-26	77.78	PREDICTED: stem-specific protein TSJT1 [Cucumis sativus]	[more]
gi\|388509738\|gb\|AFK42935.1\|	4.3e-23	70.37	unknown [Lotus japonicus]	[more]
gi\|1012243518\|ref\|XP_015941538.1\|	7.4e-23	68.67	PREDICTED: stem-specific protein TSJT1-like [Arachis duranensis]	[more]
gi\|1021566294\|ref\|XP_016174419.1\|	7.4e-23	68.67	PREDICTED: stem-specific protein TSJT1 [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR024286	DUF3700

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006522	alanine metabolic process
biological_process	GO:0006529	asparagine biosynthetic process
biological_process	GO:0006531	aspartate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004066	asparagine synthase (glutamine-hydrolyzing) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002839	Cla002839.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024286	Domain of unknown function DUF3700	PFAM	PF12481	DUF3700	coord: 2..82 score: 1.2
None	No IPR available	PANTHER	PTHR11772	ASPARAGINE SYNTHETASE	coord: 1..67 score: 1.9
None	No IPR available	PANTHER	PTHR11772:SF8	ALUMINIUM INDUCED PROTEIN WITH YGL AND LRDR MOTIFS-RELATED	coord: 1..67 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002839	Melon (DHL92) v3.5.1	mewmB305
Cla002839	Melon (DHL92) v3.5.1	mewmB313
Cla002839	Watermelon (Charleston Gray)	wcgwmB405
Cla002839	Bottle gourd (USVL1VR-Ls)	lsiwmB474
Cla002839	Watermelon (97103) v2	wmwmbB106
Cla002839	Wax gourd	wgowmB324