Cla002743 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002743
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 539986 .. 540654 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATAAAGGGGGCCTTAGTTTCTTCACAAATGAAATTGGGGTGGTTTGGTGCTGTCCTTCAGCATAATGCTGATAATTCTTACATCCTGATAGCACATTGCTTCACCACCCAACTGGAACTTTCGGTTTCACCTATGAATTTGACAATCAGCATGTTCTTGATTAAGCCAGTATCTTGGGTCTTATCAAGTGATGGAAGGAACAAAGAAAAATGGTATATTGCATGTATTGTAACATTCATCTGTAGAAGTCTTCTGCACTTAATTTTTGGTTTCATATTAAGTATAGGATGATCAATCATTTGCCACTCGTGGTTGTTAGTGAGCATCTTAGCCATTGATTCATTTTATTTTCTGCCTGGTAGTGTTTAAATCCGGTTGCAAAAGGAATATCTTTAATTGTTTTCCAATTGACTGATCATGGAGCTGTTTCTCATTGAAGTTTTCACTCTTGAAATCAATTAAATTGTGCAACTTACTGAAAAAATGATCGTATGGATGCAGGCTATGATGGGAGCAATTTATTTCATATTTATAGCGTTGAATAAAGATGAAGGACCAAGGGGAGATGGAGGCTCCTCCTCCTCCTCCTCCTCCTCTACCTCCCCAACCTCTACAGAAGAGACTCTTGAAGAAGCTAGAAGAATAATGGAGAAGTACAAGTAG

mRNA sequence

ATGGTTATAAAGGGGGCCTTAGTTTCTTCACAAATGAAATTGGGGTGGTTTGGTGCTGTCCTTCAGCATAATGCTGATAATTCTTACATCCTGATAGCACATTGCTTCACCACCCAACTGGAACTTTCGGTTTCACCTATGAATTTGACAATCAGCATGTTCTTGATTAAGCCAGTATCTTGGGTCTTATCAAGTGATGGAAGGAACAAAGAAAAATGGATGATCAATCATTTGCCACTCGTGGTTGCTATGATGGGAGCAATTTATTTCATATTTATAGCGTTGAATAAAGATGAAGGACCAAGGGGAGATGGAGGCTCCTCCTCCTCCTCCTCCTCCTCTACCTCCCCAACCTCTACAGAAGAGACTCTTGAAGAAGCTAGAAGAATAATGGAGAAGTACAAGTAG

Coding sequence (CDS)

ATGGTTATAAAGGGGGCCTTAGTTTCTTCACAAATGAAATTGGGGTGGTTTGGTGCTGTCCTTCAGCATAATGCTGATAATTCTTACATCCTGATAGCACATTGCTTCACCACCCAACTGGAACTTTCGGTTTCACCTATGAATTTGACAATCAGCATGTTCTTGATTAAGCCAGTATCTTGGGTCTTATCAAGTGATGGAAGGAACAAAGAAAAATGGATGATCAATCATTTGCCACTCGTGGTTGCTATGATGGGAGCAATTTATTTCATATTTATAGCGTTGAATAAAGATGAAGGACCAAGGGGAGATGGAGGCTCCTCCTCCTCCTCCTCCTCCTCTACCTCCCCAACCTCTACAGAAGAGACTCTTGAAGAAGCTAGAAGAATAATGGAGAAGTACAAGTAG

Protein sequence

MVIKGALVSSQMKLGWFGAVLQHNADNSYILIAHCFTTQLELSVSPMNLTISMFLIKPVSWVLSSDGRNKEKWMINHLPLVVAMMGAIYFIFIALNKDEGPRGDGGSSSSSSSSTSPTSTEETLEEARRIMEKYK

Homology

[Close]

BLAST of Cla002743 vs. TrEMBL
Match: A0A0A0L913_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G624010 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-14
Identity = 46/53 (86.79%), Postives = 46/53 (86.79%), Query Frame = 1


Query: 83  AMMGAIYFIFIALNKDEGPRGDGGSSSSSSSSTSPTSTEETLEEARRIMEKYK 136
           AMMGAIYFIFIALNKDEGPRG GGSSS      SPTSTEETLEEARRIMEKYK
Sbjct: 3   AMMGAIYFIFIALNKDEGPRGGGGSSS------SPTSTEETLEEARRIMEKYK 49

[Close]

BLAST of Cla002743 vs. TrEMBL
Match: D7U3E4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g05500 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-09
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 1


Query: 42  LSVSPMNLTISMFLIKPVSWVLSSDGRNKEKWMINHLPLVVAMMGAIYFIFIALNKDEGP 101
           +SV+ + L +++F+ K                 ++    V+AMMG IYF FIALNKD+GP
Sbjct: 100 ISVTVVTLAVALFVFKS---------------FLSTAFFVLAMMGLIYFTFIALNKDDGP 159

Query: 102 RGDGGSSSSSSSSTSPTSTEETLEEARRIMEKYK 136
           RG GG       +    STE++LEEARRIMEKYK
Sbjct: 160 RGGGGGGGVDGGT---PSTEDSLEEARRIMEKYK 175

[Close]

BLAST of Cla002743 vs. TrEMBL
Match: A0A068U5S8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016335001 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-09
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 1


Query: 81  VVAMMGAIYFIFIALNKDEGPRGDGGSSSSSSSSTSPTSTEETLEEARRIMEKYK 136
           V+AMMG IYF FIALNKDEGP+GDGG+          TS E++LEEAR+IMEKYK
Sbjct: 136 VLAMMGLIYFTFIALNKDEGPKGDGGT----------TSVEDSLEEARKIMEKYK 180

[Close]

BLAST of Cla002743 vs. TrEMBL
Match: W9S312_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015169 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-09
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 1


Query: 42  LSVSPMNLTISMFLIKPVSWVLSSDGRNKEKWMINHLPLVVAMMGAIYFIFIALNKDEGP 101
           +SV+   L +S+F++K                 ++    V+A MG +YF FIAL KDEGP
Sbjct: 107 ISVTVAALAVSLFVLKS---------------FLSTAFFVLATMGLVYFTFIALYKDEGP 166

Query: 102 RGDGGSSSSSSSSTSPTSTEETLEEARRIMEKYK 136
           RG G    +  +  +PTSTE+ LEEARRIMEKYK
Sbjct: 167 RGGG---DTKFTKDTPTSTEDALEEARRIMEKYK 182

[Close]

BLAST of Cla002743 vs. TrEMBL
Match: M5VXV6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012136mg PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.0e-09
Identity = 39/94 (41.49%), Postives = 58/94 (61.70%), Query Frame = 1


Query: 42  LSVSPMNLTISMFLIKPVSWVLSSDGRNKEKWMINHLPLVVAMMGAIYFIFIALNKDEGP 101
           +SV+ + L +S+F++K                +++ +  V+A MG +YF FIALNKDEGP
Sbjct: 108 VSVTVVALALSLFVLKS---------------LLSTVFFVLATMGLVYFTFIALNKDEGP 167

Query: 102 RGDGGSSSSSSSSTSPTSTEETLEEARRIMEKYK 136
           +G GG++S+          E++LEEARRIMEKYK
Sbjct: 168 KGGGGTTSTPKEE----GMEDSLEEARRIMEKYK 182

[Close]

BLAST of Cla002743 vs. NCBI nr
Match: gi|659093011|ref|XP_008447333.1| (PREDICTED: uncharacterized protein LOC103489804 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 3.7e-16
Identity = 56/94 (59.57%), Postives = 63/94 (67.02%), Query Frame = 1


Query: 42  LSVSPMNLTISMFLIKPVSWVLSSDGRNKEKWMINHLPLVVAMMGAIYFIFIALNKDEGP 101
           +SV  + L I +FL K +               ++    V+AMMGAIYFIFIALNKDEGP
Sbjct: 100 ISVGIVALAIGLFLFKSI---------------LSTALFVLAMMGAIYFIFIALNKDEGP 159

Query: 102 RGDGGSSSSSSSSTSPTSTEETLEEARRIMEKYK 136
           RG GGSSSSSSS    TSTEETLEEARRIMEKYK
Sbjct: 160 RGGGGSSSSSSS----TSTEETLEEARRIMEKYK 174

[Close]

BLAST of Cla002743 vs. NCBI nr
Match: gi|449468612|ref|XP_004152015.1| (PREDICTED: uncharacterized protein LOC101207451 isoform X1 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 4.9e-16
Identity = 56/94 (59.57%), Postives = 62/94 (65.96%), Query Frame = 1


Query: 42  LSVSPMNLTISMFLIKPVSWVLSSDGRNKEKWMINHLPLVVAMMGAIYFIFIALNKDEGP 101
           +SV  + LTI +FL K V               ++    V+AMMGAIYFIFIALNKDEGP
Sbjct: 105 ISVGIVALTIGLFLFKSV---------------LSTALFVLAMMGAIYFIFIALNKDEGP 164

Query: 102 RGDGGSSSSSSSSTSPTSTEETLEEARRIMEKYK 136
           RG GGSSS      SPTSTEETLEEARRIMEKYK
Sbjct: 165 RGGGGSSS------SPTSTEETLEEARRIMEKYK 177

[Close]

BLAST of Cla002743 vs. NCBI nr
Match: gi|778682054|ref|XP_011651636.1| (PREDICTED: uncharacterized protein LOC101207451 isoform X2 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 5.4e-15
Identity = 48/56 (85.71%), Postives = 48/56 (85.71%), Query Frame = 1


Query: 80  LVVAMMGAIYFIFIALNKDEGPRGDGGSSSSSSSSTSPTSTEETLEEARRIMEKYK 136
           LV AMMGAIYFIFIALNKDEGPRG GGSSS      SPTSTEETLEEARRIMEKYK
Sbjct: 93  LVPAMMGAIYFIFIALNKDEGPRGGGGSSS------SPTSTEETLEEARRIMEKYK 142

[Close]

BLAST of Cla002743 vs. NCBI nr
Match: gi|700203200|gb|KGN58333.1| (hypothetical protein Csa_3G624010 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-14
Identity = 46/53 (86.79%), Postives = 46/53 (86.79%), Query Frame = 1


Query: 83  AMMGAIYFIFIALNKDEGPRGDGGSSSSSSSSTSPTSTEETLEEARRIMEKYK 136
           AMMGAIYFIFIALNKDEGPRG GGSSS      SPTSTEETLEEARRIMEKYK
Sbjct: 3   AMMGAIYFIFIALNKDEGPRGGGGSSS------SPTSTEETLEEARRIMEKYK 49

[Close]

BLAST of Cla002743 vs. NCBI nr
Match: gi|769821625|ref|XP_011620359.1| (PREDICTED: uncharacterized protein LOC18426027 [Amborella trichopoda])

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-10
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1


Query: 42  LSVSPMNLTISMFLIKPVSWVLSSDGRNKEKWMINHLPLVVAMMGAIYFIFIALNKDEGP 101
           + V+ + LT+S++++K                +++    V+AMMG IYF+FIALNKDEGP
Sbjct: 93  IGVAVLTLTLSLYVLKS---------------LLSTAFFVLAMMGLIYFVFIALNKDEGP 152

Query: 102 -RGDGGSSSSSSSSTSPTSTEETLEEARRIMEKYK 136
            RG GG     +S     ST+ETLEEARRIMEKY+
Sbjct: 153 GRGGGGGGGDGTS-----STDETLEEARRIMEKYR 167

The following BLAST results are available for this feature:

BLAST of Cla002743 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L913_CUCSA	1.9e-14	86.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G624010 PE=4 SV=1	[more]
D7U3E4_VITVI	1.1e-09	43.62	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g05500 PE=4 SV=...	[more]
A0A068U5S8_COFCA	1.4e-09	65.45	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016335001 PE=4 SV=1	[more]
W9S312_9ROSA	3.1e-09	43.62	Uncharacterized protein OS=Morus notabilis GN=L484_015169 PE=4 SV=1	[more]
M5VXV6_PRUPE	4.0e-09	41.49	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012136mg PE=4 SV=1	[more]

BLAST of Cla002743 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093011\|ref\|XP_008447333.1\|	3.7e-16	59.57	PREDICTED: uncharacterized protein LOC103489804 [Cucumis melo]	[more]
gi\|449468612\|ref\|XP_004152015.1\|	4.9e-16	59.57	PREDICTED: uncharacterized protein LOC101207451 isoform X1 [Cucumis sativus]	[more]
gi\|778682054\|ref\|XP_011651636.1\|	5.4e-15	85.71	PREDICTED: uncharacterized protein LOC101207451 isoform X2 [Cucumis sativus]	[more]
gi\|700203200\|gb\|KGN58333.1\|	2.7e-14	86.79	hypothetical protein Csa_3G624010 [Cucumis sativus]	[more]
gi\|769821625\|ref\|XP_011620359.1\|	3.1e-10	45.26	PREDICTED: uncharacterized protein LOC18426027 [Amborella trichopoda]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU28332	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002743	Cla002743.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU28332	WMU28332	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36777	FAMILY NOT NAMED	coord: 81..135 score: 1.0
None	No IPR available	PANTHER	PTHR36777:SF1	SUBFAMILY NOT NAMED	coord: 81..135 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002743	Cla97C07G129960	Watermelon (97103) v2	wmwmbB176
Cla002743	Lsi05G010910	Bottle gourd (USVL1VR-Ls)	lsiwmB357
Cla002743	Carg08919	Silver-seed gourd	carwmB0779
Cla002743	Bhi05G000081	Wax gourd	wgowmB266

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002743	Cucumber (Chinese Long) v2	cuwmB587
Cla002743	Cucurbita pepo (Zucchini)	cpewmB258
Cla002743	Cucurbita pepo (Zucchini)	cpewmB701
Cla002743	Cucurbita pepo (Zucchini)	cpewmB843
Cla002743	Bottle gourd (USVL1VR-Ls)	lsiwmB015
Cla002743	Bottle gourd (USVL1VR-Ls)	lsiwmB194
Cla002743	Bottle gourd (USVL1VR-Ls)	lsiwmB360
Cla002743	Cucumber (Gy14) v2	cgybwmB209
Cla002743	Cucumber (Gy14) v2	cgybwmB212
Cla002743	Cucumber (Gy14) v2	cgybwmB549
Cla002743	Melon (DHL92) v3.6.1	medwmB358
Cla002743	Melon (DHL92) v3.6.1	medwmB445
Cla002743	Silver-seed gourd	carwmB0069
Cla002743	Cucumber (Chinese Long) v3	cucwmB231
Cla002743	Cucumber (Chinese Long) v3	cucwmB234
Cla002743	Watermelon (97103) v2	wmwmbB162
Cla002743	Watermelon (97103) v1	wmwmB100
Cla002743	Watermelon (97103) v1	wmwmB117
Cla002743	Cucumber (Gy14) v1	cgywmB084
Cla002743	Cucumber (Gy14) v1	cgywmB246
Cla002743	Cucumber (Gy14) v1	cgywmB476
Cla002743	Cucurbita maxima (Rimu)	cmawmB492
Cla002743	Cucurbita maxima (Rimu)	cmawmB559
Cla002743	Cucurbita moschata (Rifu)	cmowmB486
Cla002743	Cucurbita moschata (Rifu)	cmowmB552
Cla002743	Cucurbita moschata (Rifu)	cmowmB791
Cla002743	Melon (DHL92) v3.5.1	mewmB360
Cla002743	Melon (DHL92) v3.5.1	mewmB411
Cla002743	Melon (DHL92) v3.5.1	mewmB460
Cla002743	Watermelon (Charleston Gray)	wcgwmB026
Cla002743	Cucumber (Chinese Long) v2	cuwmB223
Cla002743	Watermelon (Charleston Gray)	wcgwmB282
Cla002743	Watermelon (Charleston Gray)	wcgwmB325
Cla002743	Watermelon (Charleston Gray)	wcgwmB374
Cla002743	Cucumber (Chinese Long) v2	cuwmB227