Cla002731 (gene) Watermelon (97103) v1

Overview
NameCla002731
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionAlba-like protein C9orf23 (AHRD V1 **-- B5XCP9_SALSA); contains Interpro domain(s) IPR002775 Alba, DNA/RNA-binding protein
LocationChr7 : 438576 .. 440951 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGATACCAGAAGGTCGAGAAGCCCAAACCCGAATCACCCATTAACGAAAATGAGATCCGAATCACTAGTCAAGGCGCCATTCGTAACTACATCACCTATGCTTCTACACTTCTTCAGGTTTATCTTCTCCTCATTCGATCTCCTTTCTCCTTCATTTTCATCTGCTTGTCGGAGTTCCGCCTGCTGATTTTGTAGCAATGCTGTGTCTGTTCTGTAGGCTTGGGTTCGTCTGTCTGAACTTTCGTGTTTTGTTTAATTTGGAACAGTCTTGGTGTCTATCGATTTGGGTATTTCTCATTGGATGATTTTGTGATTGTATTGATATGTTAATGATGACTAGTCTGATATCTTTTTGGGTTGTTGGGGATTTTTTTTTTTCTCTTCACTTAGTTTCATTGGATGTGCATGCTGTTTTTATAAGGAACAAATATTTGAATGAAAAGATGAAACATGTTGAAGGATTCCAAGGAGATAACAAATACACTCTAATTGGAGACTGACCATAAAACTCATGCAACTAGAGGTCTGTTGAGAAGTAACAAAAACATTGGTCCCCAAGCTCCATGTTTAAGGTTTAAACATCATCAAAGTTATTTTTAAATTTAGTTTAATGTTAGTTATAATGTGTCCACTACTTTTGATTGTCCTACTGTCATCTGTTTAATCCTTGGTGCACCCTCTTCTTGTTTTTCTTCTGATTTTTATCTTATTCTTGTTCTTTTTTAAGCACCTTTTGCCTTTGAGTATGTTGTTTGATAAATGGTTTGTAGTATTTTGGTTATCAGCAAGACTGCATTACATAGGATGTTGTTCTTCTTGGAACTTATTCAGGAAAAACGTGTCAGAGAGATCGTCTTAAAAGCAATGGGACAGGCAATCAGTAAAGCAGTGGCTATTGCAGAAATTTTAAAGGTTTGTTTCCTTTATAATATGCGTGCCTCTGAGTGCAAATATTTCATGATTGATAAGCCATGTGTATCCCCAAAACAGAAGAGAATATCACGGTTGCATCAGGAAACGGCTATCAGCTCAGTTAGCATAACTGATGTATGGGAGCCCATTGAAGAGGGTCTTGTACCGTAAGTTTTTTTATTTTCTGCATTCAAATTTCAAGTTTAATTTAATTGTATGATAAAGAATTGAGAGGCTAATTGTGTTTAATTTGATTTGCACTCATATATACAGCATTCACAACTTTGTTGCATGTTCTATGGGTTTGTAGTATGTAGTCTTGTACTTTAGATGTGCAAGAAATAACTTCTAACATGTCACGCAGGGTGGAGATGACTCGTCATGTCTCAATGATTTCAATTACCTTGTCCAATCGGGAGCTAAATAAAAATTCTCCGGGGTAAGTTGTTTTGGAAACTTCACAATTTGGTATAAAATGTGGCATTTAGTTATTTTTCTTGCATGTTTCATGCTTTTGGTTTCTTCTGTATGTATGAGGATGAATTAACTTCTGTGCGTAGGTACCAAGCTCCACACTTTGTGGAACAGCCAAAGCAACAATACAACAATCAGCAGCCGCTGCCACAACAACAACCCCCCAGACAACCACGCGTTTATCACAATGCTGCTAACGAAGGTGATTTCAGCAACACTTCATTATTGGATTATGGAACTCTGCCTTGTCTGGACTTTGACATATTTCTGCCACTTTTGCAGATCCATATGGCCAAGGAAGAGGGCGTGGTAGAGGGAGAGGGCGTGGTTGGGGAAGAGGTGGATATGGGAACTATCAAGGTGGATATGGCAACTACCAAGGTGGATACGGCCACTACCAAGGTGGTTACGGCCACTACCAAGGTGGATCTGATAACTACCAAGGTGGACCTGGATATTATCAAGGTGAATATGGAACTGTCAAATAATTTCGATAGAAGTATGCTTTGAAGTGTTCAGTGTATTGCATTTGACTTTGTATTGTTCTGGAGTACGATTTTTAACTCTCGTGAGATTTCTTCATCATAGATAATGGTGGGTACTCAAATTGGGGAAGAGGAGGTGGACGGAGTAGAGGCTGGGCCTACCGTGGTAAGTTTTTTTCTTAACGTTCTCCATGCATCACAAAAGTATAAGCCAAGAGTCTGTCTTTGAGTTGACTGAGGAATGTACGCGGTCAAGTCTTGAAATGCATCGTCTCATTGATTTTTCTTCAAAATTATAACTAGTAATTTAGGGTAGTATATGTAGACGTCTGATCAATGTAATGTTTGCAAAATGCTCTTGTGGGAACAAGGCGTTTCAAGCAATTATTATCCTCCTGCAGGAGCTGGATATGAAAGAGGCAGAGGGGGTAGAGGTTATGGCCGTGGACGGGGGCGAATGGGCGGTCGCACAAGGGGTGGCGGAGGAAACCAGGCTTAG

mRNA sequence

ATGGATAGATACCAGAAGGTCGAGAAGCCCAAACCCGAATCACCCATTAACGAAAATGAGATCCGAATCACTAGTCAAGGCGCCATTCGTAACTACATCACCTATGCTTCTACACTTCTTCAGGAAAAACGTGTCAGAGAGATCGTCTTAAAAGCAATGGGACAGGCAATCAGTAAAGCAGTGGCTATTGCAGAAATTTTAAAGAAGAGAATATCACGGTTGCATCAGGAAACGGCTATCAGCTCAGTTAGCATAACTGATGTATGGGAGCCCATTGAAGAGGGTCTTGTACCGGTGGAGATGACTCGTCATGTCTCAATGATTTCAATTACCTTGTCCAATCGGGAGCTAAATAAAAATTCTCCGGGGTACCAAGCTCCACACTTTGTGGAACAGCCAAAGCAACAATACAACAATCAGCAGCCGCTGCCACAACAACAACCCCCCAGACAACCACGCGTTTATCACAATGCTGCTAACGAAGATCCATATGGCCAAGGAAGAGGGCGTGGTAGAGGGAGAGGGCGTGGTTGGGGAAGAGGTGGATATGGGAACTATCAAGGTGGATATGGCAACTACCAAGGTGGATACGGCCACTACCAAGGTGGTTACGGCCACTACCAAGGTGGATCTGATAACTACCAAGGTGGACCTGGATATTATCAAGATAATGGTGGGTACTCAAATTGGGGAAGAGGAGGTGGACGGAGTAGAGGCTGGGCCTACCGTGGAGCTGGATATGAAAGAGGCAGAGGGGGTAGAGGTTATGGCCGTGGACGGGGGCGAATGGGCGGTCGCACAAGGGGTGGCGGAGGAAACCAGGCTTAG

Coding sequence (CDS)

ATGGATAGATACCAGAAGGTCGAGAAGCCCAAACCCGAATCACCCATTAACGAAAATGAGATCCGAATCACTAGTCAAGGCGCCATTCGTAACTACATCACCTATGCTTCTACACTTCTTCAGGAAAAACGTGTCAGAGAGATCGTCTTAAAAGCAATGGGACAGGCAATCAGTAAAGCAGTGGCTATTGCAGAAATTTTAAAGAAGAGAATATCACGGTTGCATCAGGAAACGGCTATCAGCTCAGTTAGCATAACTGATGTATGGGAGCCCATTGAAGAGGGTCTTGTACCGGTGGAGATGACTCGTCATGTCTCAATGATTTCAATTACCTTGTCCAATCGGGAGCTAAATAAAAATTCTCCGGGGTACCAAGCTCCACACTTTGTGGAACAGCCAAAGCAACAATACAACAATCAGCAGCCGCTGCCACAACAACAACCCCCCAGACAACCACGCGTTTATCACAATGCTGCTAACGAAGATCCATATGGCCAAGGAAGAGGGCGTGGTAGAGGGAGAGGGCGTGGTTGGGGAAGAGGTGGATATGGGAACTATCAAGGTGGATATGGCAACTACCAAGGTGGATACGGCCACTACCAAGGTGGTTACGGCCACTACCAAGGTGGATCTGATAACTACCAAGGTGGACCTGGATATTATCAAGATAATGGTGGGTACTCAAATTGGGGAAGAGGAGGTGGACGGAGTAGAGGCTGGGCCTACCGTGGAGCTGGATATGAAAGAGGCAGAGGGGGTAGAGGTTATGGCCGTGGACGGGGGCGAATGGGCGGTCGCACAAGGGGTGGCGGAGGAAACCAGGCTTAG

Protein sequence

MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEDPYGQGRGRGRGRGRGWGRGGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDNGGYSNWGRGGGRSRGWAYRGAGYERGRGGRGYGRGRGRMGGRTRGGGGNQA
Homology
[Close]
BLAST of Cla002731 vs. Swiss-Prot
Match: AGO18_ORYSJ (Protein argonaute 18 OS=Oryza sativa subsp. japonica GN=AGO18 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-16
Identity = 62/125 (49.60%), Postives = 68/125 (54.40%), Query Frame = 1 

Query: 165 GQGRGR----GRGRG------RGWGRGGY-GNYQGGYGNYQGGYGHYQGGYGHYQGGSDN 224
           GQGRG     G GRG       G GRGGY G+  GGYG   GGY H  G  G+ +GG   
Sbjct: 83  GQGRGYYDDGGDGRGYQRGMEGGGGRGGYRGDGDGGYGRGGGGY-HGDGERGYGRGGGGG 142

Query: 225 YQGGPGYYQDNGGYSNWGRG-GGRSRGWAYRG---AGYERGRGGRGYGRGRGRMGGR-TR 274
             GG GY  D+ G S++GR  GG   G  Y G   AGY RGRGGR Y  GRG  G R  R
Sbjct: 143 GGGGGGYRGDDEGRSSYGRARGGGGGGGGYHGDGEAGYGRGRGGRDYDGGRGGGGRRGGR 202

[Close]
BLAST of Cla002731 vs. Swiss-Prot
Match: AGO2_ORYSJ (Protein argonaute 2 OS=Oryza sativa subsp. japonica GN=AGO2 PE=2 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-16
Identity = 58/112 (51.79%), Postives = 57/112 (50.89%), Query Frame = 1 

Query: 165 GQGRGRGRGRGRGWGRGGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDN 224
           G GRGRGRGRG G G GG     GGYG   GG    +GG G   GG     GG GY    
Sbjct: 7   GGGRGRGRGRGGGRGGGGGDGRGGGYGGAGGGGVGGRGGRGPPGGG-----GGRGYEPGG 66

Query: 225 G-GYSNWGRGGGRSRGWAYRGAGYERGRGGRGY---GRGRGRMGGRTRGGGG 273
           G GY   G GGGR  G    G GYE G GGRGY   GRG    GGR  GGGG
Sbjct: 67  GRGYGGGGGGGGRGYGGGGGGGGYESG-GGRGYGGGGRGYESGGGRGPGGGG 112


HSP 2 Score: 36.6 bits (83), Expect = 5.3e-01
Identity = 17/24 (70.83%), Postives = 15/24 (62.50%), Query Frame = 1 

Query: 248 ERGRGGRGYGRGRGRMGGRTRGGG 272
           E  RGG G GRGRGR GGR  GGG
Sbjct: 2   EHERGGGGRGRGRGRGGGRGGGGG 25

[Close]
BLAST of Cla002731 vs. Swiss-Prot
Match: GRP3_ARATH (Glycine-rich protein 3 OS=Arabidopsis thaliana GN=GRP3 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.4e-16
Identity = 45/85 (52.94%), Postives = 45/85 (52.94%), Query Frame = 1 

Query: 162 DPYGQGRGRGRGRGRGWGRGGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYY 221
           D  G G   G     G  +GG GNYQGG GNYQGG G+YQGG G YQGG   YQGG G Y
Sbjct: 40  DQRGYGDNGGNYNNGGGYQGGGGNYQGGGGNYQGGGGNYQGGGGRYQGGGGRYQGGGGRY 99

Query: 222 QDNGGYSNWGRGGGR--SRGWAYRG 245
           Q  GG    G  GG     G  YRG
Sbjct: 100 QGGGGRQGGGGSGGSYCRHGCCYRG 124


HSP 2 Score: 79.7 bits (195), Expect = 5.4e-14
Identity = 44/80 (55.00%), Postives = 48/80 (60.00%), Query Frame = 1 

Query: 176 RGWGRGGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDNGGYSNWGRGGG 235
           RG+G  G GNY  G G YQGG G+YQGG G+YQGG  NYQGG G YQ  GG   +  GGG
Sbjct: 42  RGYGDNG-GNYNNG-GGYQGGGGNYQGGGGNYQGGGGNYQGGGGRYQGGGG--RYQGGGG 101

Query: 236 RSRGWAYRGAGYERGRGGRG 256
           R     Y+G G  +G GG G
Sbjct: 102 R-----YQGGGGRQGGGGSG 112

[Close]
BLAST of Cla002731 vs. Swiss-Prot
Match: ROA3_HUMAN (Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens GN=HNRNPA3 PE=1 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-15
Identity = 49/109 (44.95%), Postives = 51/109 (46.79%), Query Frame = 1 

Query: 165 GQGRGRGRGRGRGWGRGGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDN 224
           G   G G   GRG   GG G Y GG G  +G YG   GGY  + G   NY GGPGY    
Sbjct: 228 GNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGY-SSR 287

Query: 225 GGYSNWGRGGGRSRGWAYRGAGYERGRGGRGYGRGRGRMGGRTRGGGGN 274
           GGY      GG   G+  +G GY  G G  GY  G G  GG   GGGGN
Sbjct: 288 GGY------GGGGPGYGNQGGGYGGGGGYDGYNEG-GNFGGGNYGGGGN 328


HSP 2 Score: 67.0 bits (162), Expect = 3.6e-10
Identity = 49/107 (45.79%), Postives = 49/107 (45.79%), Query Frame = 1 

Query: 164 YGQGRGRGRGRGRGWGRGGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQD 223
           YG G G     G G G  GYGN  GGYG   GGY  Y  G G++ GG  NY GG G Y D
Sbjct: 277 YGGGPGYSSRGGYGGGGPGYGNQGGGYGG-GGGYDGYNEG-GNFGGG--NY-GGGGNYND 336

Query: 224 NGGYS----------NWGRGGGRSRGWAYRGAGYERGRGGRGYGRGR 261
            G YS            G  GGRS G  Y G GY  G G  GYG  R
Sbjct: 337 FGNYSGQQQSNYGPMKGGSFGGRSSGSPY-GGGYGSGGGSGGYGSRR 377

[Close]
BLAST of Cla002731 vs. Swiss-Prot
Match: RBP56_HUMAN (TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-15
Identity = 52/111 (46.85%), Postives = 57/111 (51.35%), Query Frame = 1 

Query: 165 GQGRGRGRGRGRGWGRGGYGNYQGG-YGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQD 224
           G G G  RG G G  RGGYG  +GG YG  +GGYG  +GGYG  +GG    +GG G  + 
Sbjct: 468 GGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRS 527

Query: 225 NGGYSNWGRGGGRSRGWAYRGAGYERGRGGRGYGRGRGRMGGRTRGGGGNQ 275
            GGY    RGGG   G   R  GY   R G GYG  RG   G  RGG G +
Sbjct: 528 RGGYGG-DRGGGSGYG-GDRSGGYGGDRSGGGYGGDRGGGYGGDRGGYGGK 576


HSP 2 Score: 77.8 bits (190), Expect = 2.1e-13
Identity = 56/125 (44.80%), Postives = 61/125 (48.80%), Query Frame = 1 

Query: 165 GQGRGRGRG----RGRGWG---RGGYGNYQGGYGNYQ-GGYGHYQGGYGHYQGGSDNYQG 224
           G G  RG G    RG G+G    GGYG  +GGYG  + GGYG  +GGYG  +GG    +G
Sbjct: 454 GYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRG 513

Query: 225 GPGYYQDNGGY----SNWGRGGGRSRGWAY---RGAGYERGRGGRGYGRGRGRMGGRTRG 275
             GY  D GGY    S  G GG R  G  Y   R  GY   R G GYG  RG   G  RG
Sbjct: 514 --GYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRG 573


HSP 3 Score: 67.4 bits (163), Expect = 2.8e-10
Identity = 52/117 (44.44%), Postives = 56/117 (47.86%), Query Frame = 1 

Query: 164 YGQGRG-RGRGRGRGWGRGGYGNYQ--GGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGY 223
           YG  RG RGRG GRG  RGGYG  +  GGYG  +   G Y G      GG    + G GY
Sbjct: 399 YGGERGYRGRG-GRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSG--GGYGGDRSGGGY 458

Query: 224 YQDNGGYSNWGRGGGRS--RGWAYRG-AGYERGRGGRGYGRGRGRMGGRTRGGGGNQ 275
             D GG     RGGG    RG  Y G  G   G  G GYG  RG  GG   G GG++
Sbjct: 459 GGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDR 512


HSP 4 Score: 66.2 bits (160), Expect = 6.2e-10
Identity = 55/138 (39.86%), Postives = 62/138 (44.93%), Query Frame = 1 

Query: 157 NAANED-PYGQGRGRGRGRGRGW-------GRGGYGNYQGGYGNYQ--GGYGHYQGGYGH 216
           N  NE  P       G  RGRG+       GRGG G  +GGYG  +  GGYG  +   G 
Sbjct: 377 NQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGG 436

Query: 217 YQGGSDNYQGGPGYYQDNGGY-SNWGRGGGRSRGWAY---RGAGYERGRG------GRGY 275
           Y G  D   GG G  +  GGY  + G G G  RG  Y   RG GY   RG      G GY
Sbjct: 437 YSG--DRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGY 496


HSP 5 Score: 40.8 bits (94), Expect = 2.8e-02
Identity = 38/107 (35.51%), Postives = 46/107 (42.99%), Query Frame = 1 

Query: 172 RGRGRGWGRGGYGNYQGGYGNYQGGYGHYQGG---YGHYQGGSDNYQGGPGYYQDNGGYS 231
           RG G G GR G G Y+G  G +QG  G  + G     +   G+ N+       Q N    
Sbjct: 326 RGGGSGGGRRGRGGYRGR-GGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRP 385

Query: 232 NWGRGGGRSRGWAYRGAGYERGRGGRGYGRGRGRMGGRTRGGGGNQA 276
                  R  G  +RG GY    G RGY RGRG  GG   G GG+++
Sbjct: 386 E----DSRPSGGDFRGRGYG---GERGY-RGRGGRGGDRGGYGGDRS 423


HSP 6 Score: 27.3 bits (59), Expect = 3.2e+02
Identity = 21/61 (34.43%), Postives = 25/61 (40.98%), Query Frame = 1 

Query: 165 GQGRGRGRGRGRGWGRGGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDN 224
           G+GRG     GRG   G  G  +GG+ N+ GG+  Y G        SDN      + Q  
Sbjct: 184 GRGRGGYDKDGRGPMTGSSGGDRGGFKNF-GGHRDY-GPRTDADSESDNSDNNTIFVQGL 242

Query: 225 G 226
           G
Sbjct: 244 G 242

[Close]
BLAST of Cla002731 vs. TrEMBL
Match: V7B7V9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G123500g PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 1.1e-106
Identity = 207/274 (75.55%), Postives = 218/274 (79.56%), Query Frame = 1 

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRIT+QGAIRNYITYAS+LLQEK  +EIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYASSLLQEKHAKEIVLKAMGQAISKT 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRI RLHQ+T ISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS RELNKN
Sbjct: 61  VAIAEILKKRIPRLHQDTGISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSARELNKN 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEDPYGQGRGRGRGRGRG--W 180
           SPGYQ+P  VEQPK   N      QQQP +  RV +NA NED YG+GRGRGRGRGRG  W
Sbjct: 121 SPGYQSPSNVEQPKPHSNY-----QQQPIKPARVPYNAGNEDSYGRGRGRGRGRGRGRNW 180

Query: 181 GRGGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDNGGYSNWGRGGGRSR 240
           GRGGYG YQGGYGNYQGGYG+YQGGY +              YQDNGGYSN GRGGGR R
Sbjct: 181 GRGGYG-YQGGYGNYQGGYGYYQGGYAN--------------YQDNGGYSNRGRGGGRGR 240

Query: 241 GWAYRGAGYERGRGGRGYGRGRGRMGGRTRGGGG 273
           GW YRG GY+ GRGG G G   GR GG   GG G
Sbjct: 241 GWGYRGTGYDGGRGG-GAGYEGGRGGGGYEGGRG 253

[Close]
BLAST of Cla002731 vs. TrEMBL
Match: A0A0B2PD44_GLYSO (Alba-like protein C9orf23 OS=Glycine soja GN=glysoja_038062 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 9.4e-106
Identity = 214/327 (65.44%), Postives = 226/327 (69.11%), Query Frame = 1 

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRIT+QGAIRNYITYAS+LLQEK   EIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYASSLLQEKHASEIVLKAMGQAISKT 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRI +LHQ+T ISSVSI D WEPIEEGLVPVEMTRHVSMISITLS REL++N
Sbjct: 61  VAIAEILKKRIPKLHQDTGISSVSIVDTWEPIEEGLVPVEMTRHVSMISITLSTRELDEN 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEDPYGQGRGRGRGRGRG--W 180
           SPGYQAP  VEQPKQ  N      QQQ  +  RV +NA NED YG+GRGRGRGRGRG  W
Sbjct: 121 SPGYQAPSNVEQPKQHSNY-----QQQSIKPARVPYNAVNEDSYGRGRGRGRGRGRGRNW 180

Query: 181 GRGGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDNGGYSNWGRGGGRSR 240
           GRGGYG YQGGY NYQ GYG+YQGGY +              YQDNGGYSN GRGGGR R
Sbjct: 181 GRGGYG-YQGGYANYQ-GYGYYQGGYAN--------------YQDNGGYSNRGRGGGRGR 240

Query: 241 GWAYRGAGYERGR----------------------------------------------- 276
           GW YRG GY+ GR                                               
Sbjct: 241 GWGYRGTGYDGGRGGGSGYEGGRGGGGYEGGRGGGGYEGGRGGGGYEGGRGGGGHEGGRG 300

[Close]
BLAST of Cla002731 vs. TrEMBL
Match: A0A067JR20_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17564 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.4e-104
Identity = 204/277 (73.65%), Postives = 223/277 (80.51%), Query Frame = 1 

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60
           MDRY +VEKPKPESPINENEIRITS G +RNYI+YA++LLQEK+ REIVLKAMGQAISK 
Sbjct: 1   MDRYTRVEKPKPESPINENEIRITSGGPVRNYISYATSLLQEKQAREIVLKAMGQAISKT 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           V+IAE +K+R  RLHQ+TAISSVSITDVWEPIEEGL+PVE TR VSMI+ITLS +ELN N
Sbjct: 61  VSIAEGIKRRNPRLHQDTAISSVSITDVWEPIEEGLLPVEQTRQVSMITITLSFKELNIN 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEDPYGQGRGRGRGRGRGWGR 180
           SPGYQAP  VEQPK QY       QQQ PRQ    +NA  ED YG+GRGRGRGRGR WGR
Sbjct: 121 SPGYQAPLSVEQPKVQYQQL----QQQQPRQLHGPYNAVREDSYGRGRGRGRGRGRSWGR 180

Query: 181 GGYGNYQGGYGNYQGGYGHYQGGY-GHYQGGSDNYQGGPGYYQDNGGYSNWGRGGGRSRG 240
           GGY     GYGNYQ   G+YQG Y G+YQG   NYQG    YQ+NGGYSN GRGGGR R 
Sbjct: 181 GGY-----GYGNYQ---GNYQGNYQGNYQG---NYQGN---YQENGGYSNRGRGGGRGRS 240

Query: 241 WAYRGAGYERGR--GGRGYGRGRGRMGGRTRGGGGNQ 275
           W YRGAGYERGR  GGRGYGRGRGRMGGR+RGGGGNQ
Sbjct: 241 WGYRGAGYERGRGGGGRGYGRGRGRMGGRSRGGGGNQ 259

[Close]
BLAST of Cla002731 vs. TrEMBL
Match: A0A151RF74_CAJCA (Alba-like protein C9orf23 OS=Cajanus cajan GN=KK1_037497 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 1.5e-103
Identity = 222/339 (65.49%), Postives = 236/339 (69.62%), Query Frame = 1 

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRIT+QGAIRNYITYA++LLQEK  REIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATSLLQEKNAREIVLKAMGQAISKT 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRI RLHQ+T ISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS RELNK+
Sbjct: 61  VAIAEILKKRIPRLHQDTGISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSTRELNKS 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEDPYGQGRGRGRGRGRG--W 180
           SPGYQAPH VEQPK   N QQ     QP +  RV +NA NED YG+GRGRGRGRGRG  W
Sbjct: 121 SPGYQAPHNVEQPKPHSNYQQ-----QPIKPARVPYNAVNEDSYGRGRGRGRGRGRGRNW 180

Query: 181 GRGGYGNYQGGYGNYQGGYGHYQ-GGYGHYQG-GSDNYQG-GPGYYQDNGGYSNW----- 240
           GRGGYG YQGGYGNYQGGYG+YQ GGYG+YQG G D  +G G GY    GG +++     
Sbjct: 181 GRGGYG-YQGGYGNYQGGYGYYQQGGYGNYQGTGYDGGRGGGAGYEGGRGGGNDYEGGRG 240

Query: 241 -----GRGGG--RSRGWAYRG--------------------------------------- 276
                GRGGG   SRG  Y G                                       
Sbjct: 241 GGYEGGRGGGYEGSRGGGYEGGRGGGYEGGRGGYEGGRGGGYEGGRGGYEGGRGGYGGRG 300

[Close]
BLAST of Cla002731 vs. TrEMBL
Match: A0A0B2R7P6_GLYSO (Alba-like protein C9orf23 OS=Glycine soja GN=glysoja_045869 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 2.0e-103
Identity = 206/275 (74.91%), Postives = 216/275 (78.55%), Query Frame = 1 

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60
           MDRYQKVE+PKPESPINENEIRIT+QGAIRNYITYA++LLQEK  REIVLKAMGQAISK 
Sbjct: 1   MDRYQKVERPKPESPINENEIRITTQGAIRNYITYATSLLQEKHAREIVLKAMGQAISKT 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRI +LHQ+T ISSVSI D WEPIEEGLVPVEMTRHVSMISITLS RELNKN
Sbjct: 61  VAIAEILKKRIPKLHQDTGISSVSIVDTWEPIEEGLVPVEMTRHVSMISITLSTRELNKN 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEDPYGQGRGRGRGRGRG--W 180
           SPGYQAP  VEQPK   N       QQ   +P   HNA NED YG+GRGRGRGRGRG  W
Sbjct: 121 SPGYQAPSNVEQPKPHSN------YQQQSIKPAQVHNAVNEDLYGRGRGRGRGRGRGRNW 180

Query: 181 GRGGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDNGGYSNWGRGGGRSR 240
           GRGGYG YQGGYGNYQ GYG+YQGGYG+              YQDNGGYSN GRGGGR R
Sbjct: 181 GRGGYG-YQGGYGNYQ-GYGYYQGGYGN--------------YQDNGGYSNRGRGGGRGR 240

Query: 241 GWAYRGAGYERGRGGRGY--GRGRGRMGGRTRGGG 272
           GW YRG GYE GRGG GY  GRG G  GG  RGGG
Sbjct: 241 GWGYRGGGYEGGRGG-GYEGGRGGGYEGG--RGGG 250

[Close]
BLAST of Cla002731 vs. NCBI nr
Match: gi|659109025|ref|XP_008454509.1| (PREDICTED: protein no-on-transient A-like isoform X2 [Cucumis melo])

HSP 1 Score: 567.4 bits (1461), Expect = 1.4e-158
Identity = 270/276 (97.83%), Postives = 270/276 (97.83%), Query Frame = 1 

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN
Sbjct: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEDPYGQGRGRGRGRGRGWGR 180
           SPGYQAPHFVEQPKQQYNNQQPLPQ  PPRQPRVYHNA NEDPYGQGRGRGRGRGRGWGR
Sbjct: 121 SPGYQAPHFVEQPKQQYNNQQPLPQPPPPRQPRVYHNAVNEDPYGQGRGRGRGRGRGWGR 180

Query: 181 GGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDNGGYSNWGRGGGRSRGW 240
           GGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDNGGYSNWGRGGGRSRGW
Sbjct: 181 GGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDNGGYSNWGRGGGRSRGW 240

Query: 241 AYRGAGYERGR-GGRGYGRGRGRMGGRTRGGGGNQA 276
           AYRGAGYERGR GGRGYGRGRGRMGGR RG GGNQA
Sbjct: 241 AYRGAGYERGRGGGRGYGRGRGRMGGRARGSGGNQA 276

[Close]
BLAST of Cla002731 vs. NCBI nr
Match: gi|659130273|ref|XP_008465082.1| (PREDICTED: RNA-binding protein FUS-like isoform X2 [Cucumis melo])

HSP 1 Score: 565.1 bits (1455), Expect = 6.8e-158
Identity = 270/276 (97.83%), Postives = 270/276 (97.83%), Query Frame = 1 

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSN ELNKN
Sbjct: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNGELNKN 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEDPYGQGRGRGRGRGRGWGR 180
           SPGYQAPHFVEQPKQQYNNQQPLPQ  PPRQPRVYHNA NED YGQGRGRGRGRGRGWGR
Sbjct: 121 SPGYQAPHFVEQPKQQYNNQQPLPQPPPPRQPRVYHNAVNEDLYGQGRGRGRGRGRGWGR 180

Query: 181 GGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDNGGYSNWGRGGGRSRGW 240
           GGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDNGGYSNWGRGGGRSRGW
Sbjct: 181 GGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDNGGYSNWGRGGGRSRGW 240

Query: 241 AYRGAGYERGR-GGRGYGRGRGRMGGRTRGGGGNQA 276
           AYRGAGYERGR GGRGYGRGRGRMGGRTRGGGGNQA
Sbjct: 241 AYRGAGYERGRGGGRGYGRGRGRMGGRTRGGGGNQA 276

[Close]
BLAST of Cla002731 vs. NCBI nr
Match: gi|659109023|ref|XP_008454508.1| (PREDICTED: RNA-binding protein FUS-like isoform X1 [Cucumis melo])

HSP 1 Score: 559.3 bits (1440), Expect = 3.7e-156
Identity = 270/286 (94.41%), Postives = 270/286 (94.41%), Query Frame = 1 

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN
Sbjct: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEDPYGQGRGRGRGRGRGWGR 180
           SPGYQAPHFVEQPKQQYNNQQPLPQ  PPRQPRVYHNA NEDPYGQGRGRGRGRGRGWGR
Sbjct: 121 SPGYQAPHFVEQPKQQYNNQQPLPQPPPPRQPRVYHNAVNEDPYGQGRGRGRGRGRGWGR 180

Query: 181 GGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDNGGYSNWGRGGGRSRGW 240
           GGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDNGGYSNWGRGGGRSRGW
Sbjct: 181 GGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDNGGYSNWGRGGGRSRGW 240

Query: 241 AYR----------GAGYERGR-GGRGYGRGRGRMGGRTRGGGGNQA 276
           AYR          GAGYERGR GGRGYGRGRGRMGGR RG GGNQA
Sbjct: 241 AYRGVSSNYYPTAGAGYERGRGGGRGYGRGRGRMGGRARGSGGNQA 286

[Close]
BLAST of Cla002731 vs. NCBI nr
Match: gi|659130271|ref|XP_008465081.1| (PREDICTED: RNA-binding protein FUS-like isoform X1 [Cucumis melo])

HSP 1 Score: 557.0 bits (1434), Expect = 1.9e-155
Identity = 270/286 (94.41%), Postives = 270/286 (94.41%), Query Frame = 1 

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSN ELNKN
Sbjct: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNGELNKN 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEDPYGQGRGRGRGRGRGWGR 180
           SPGYQAPHFVEQPKQQYNNQQPLPQ  PPRQPRVYHNA NED YGQGRGRGRGRGRGWGR
Sbjct: 121 SPGYQAPHFVEQPKQQYNNQQPLPQPPPPRQPRVYHNAVNEDLYGQGRGRGRGRGRGWGR 180

Query: 181 GGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDNGGYSNWGRGGGRSRGW 240
           GGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDNGGYSNWGRGGGRSRGW
Sbjct: 181 GGYGNYQGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDNGGYSNWGRGGGRSRGW 240

Query: 241 AYR----------GAGYERGR-GGRGYGRGRGRMGGRTRGGGGNQA 276
           AYR          GAGYERGR GGRGYGRGRGRMGGRTRGGGGNQA
Sbjct: 241 AYRGVSSNYYPPAGAGYERGRGGGRGYGRGRGRMGGRTRGGGGNQA 286

[Close]
BLAST of Cla002731 vs. NCBI nr
Match: gi|1009149062|ref|XP_015892277.1| (PREDICTED: protein FAM98A [Ziziphus jujuba])

HSP 1 Score: 451.1 bits (1159), Expect = 1.4e-123
Identity = 228/291 (78.35%), Postives = 243/291 (83.51%), Query Frame = 1 

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60
           MDRYQ+VEKPKPESPINENEIRIT+QG IRNYI+YA+TLLQEKRVREIVLKAMGQAISK 
Sbjct: 1   MDRYQRVEKPKPESPINENEIRITTQGVIRNYISYATTLLQEKRVREIVLKAMGQAISKT 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEI+KKRI RLHQ+TAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS +ELNKN
Sbjct: 61  VAIAEIIKKRIPRLHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSTKELNKN 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEDPYGQGRGRGRGRGRGWGR 180
           SPGYQAP+ VE  K   NNQQP    Q P+Q R+ +NA NED Y +GRGRGRGRGRGW R
Sbjct: 121 SPGYQAPYNVEPSKPLPNNQQP----QQPKQARIPYNAVNEDSYNRGRGRGRGRGRGWNR 180

Query: 181 GGYGNY--------------QGGYGNYQGGYGHYQGGYGHYQGGSDNYQGGPGYYQDNGG 240
           GGYGNY              QGGYG  QGGYG+YQGGYG+YQGG  NYQGG G YQDNGG
Sbjct: 181 GGYGNYQGGYGGNQSGYGGNQGGYGGNQGGYGNYQGGYGNYQGGYGNYQGGYGSYQDNGG 240

Query: 241 YSNWGRGGGRSRGWAYRGAGYERGR--GGRGYGRGRGRMGGRTRGGGGNQA 276
           YSN GRGGGR RGW YRGAGYERGR  GGRGYGRGRGR GGR+R GGGNQA
Sbjct: 241 YSNRGRGGGRGRGWGYRGAGYERGRGGGGRGYGRGRGRTGGRSR-GGGNQA 286

The following BLAST results are available for this feature:
BLAST of Cla002731 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGO18_ORYSJ1.2e-1649.60Protein argonaute 18 OS=Oryza sativa subsp. japonica GN=AGO18 PE=2 SV=1[more]
AGO2_ORYSJ1.2e-1651.79Protein argonaute 2 OS=Oryza sativa subsp. japonica GN=AGO2 PE=2 SV=2[more]
GRP3_ARATH4.4e-1652.94Glycine-rich protein 3 OS=Arabidopsis thaliana GN=GRP3 PE=1 SV=1[more]
ROA3_HUMAN1.7e-1544.95Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens GN=HNRNPA3 PE=1 SV=2[more]
RBP56_HUMAN2.2e-1546.85TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15 PE=1 SV=1[more]
BLAST of Cla002731 vs. TrEMBL
Match NameE-valueIdentityDescription
V7B7V9_PHAVU1.1e-10675.55Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G123500g PE=4 SV=1[more]
A0A0B2PD44_GLYSO9.4e-10665.44Alba-like protein C9orf23 OS=Glycine soja GN=glysoja_038062 PE=4 SV=1[more]
A0A067JR20_JATCU1.4e-10473.65Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17564 PE=4 SV=1[more]
A0A151RF74_CAJCA1.5e-10365.49Alba-like protein C9orf23 OS=Cajanus cajan GN=KK1_037497 PE=4 SV=1[more]
A0A0B2R7P6_GLYSO2.0e-10374.91Alba-like protein C9orf23 OS=Glycine soja GN=glysoja_045869 PE=4 SV=1[more]
BLAST of Cla002731 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109025|ref|XP_008454509.1|1.4e-15897.83PREDICTED: protein no-on-transient A-like isoform X2 [Cucumis melo][more]
gi|659130273|ref|XP_008465082.1|6.8e-15897.83PREDICTED: RNA-binding protein FUS-like isoform X2 [Cucumis melo][more]
gi|659109023|ref|XP_008454508.1|3.7e-15694.41PREDICTED: RNA-binding protein FUS-like isoform X1 [Cucumis melo][more]
gi|659130271|ref|XP_008465081.1|1.9e-15594.41PREDICTED: RNA-binding protein FUS-like isoform X1 [Cucumis melo][more]
gi|1009149062|ref|XP_015892277.1|1.4e-12378.35PREDICTED: protein FAM98A [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002775DNA/RNA-bd_Alba-like
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005829 cytosol
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002731Cla002731.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002775DNA/RNA-binding protein Alba-likeGENE3DG3DSA:3.30.110.20coord: 10..113
score: 4.5
IPR002775DNA/RNA-binding protein Alba-likePFAMPF01918Albacoord: 19..78
score: 2.6
IPR002775DNA/RNA-binding protein Alba-likeunknownSSF82704AlbA-likecoord: 16..116
score: 2.09
NoneNo IPR availablePRODOMPD010497coord: 28..73
score: 0
NoneNo IPR availablePANTHERPTHR13516RIBONUCLEASE P SUBUNIT P25coord: 2..273
score: 1.2E
NoneNo IPR availablePANTHERPTHR13516:SF3ALBA DNA/RNA-BINDING PROTEINcoord: 2..273
score: 1.2E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla002731Cucurbita maxima (Rimu)cmawmB492
Cla002731Cucurbita maxima (Rimu)cmawmB559
Cla002731Cucurbita moschata (Rifu)cmowmB486
Cla002731Cucurbita moschata (Rifu)cmowmB552
Cla002731Cucurbita moschata (Rifu)cmowmB791
Cla002731Melon (DHL92) v3.5.1mewmB360
Cla002731Melon (DHL92) v3.5.1mewmB411
Cla002731Melon (DHL92) v3.5.1mewmB460
Cla002731Watermelon (Charleston Gray)wcgwmB026
Cla002731Cucumber (Chinese Long) v2cuwmB223
Cla002731Watermelon (Charleston Gray)wcgwmB282
Cla002731Watermelon (Charleston Gray)wcgwmB325
Cla002731Watermelon (Charleston Gray)wcgwmB374
Cla002731Cucumber (Chinese Long) v2cuwmB227
Cla002731Cucumber (Chinese Long) v2cuwmB587
Cla002731Cucurbita pepo (Zucchini)cpewmB258
Cla002731Cucurbita pepo (Zucchini)cpewmB701
Cla002731Cucurbita pepo (Zucchini)cpewmB843
Cla002731Bottle gourd (USVL1VR-Ls)lsiwmB015
Cla002731Bottle gourd (USVL1VR-Ls)lsiwmB194
Cla002731Bottle gourd (USVL1VR-Ls)lsiwmB357
Cla002731Bottle gourd (USVL1VR-Ls)lsiwmB360
Cla002731Cucumber (Gy14) v2cgybwmB209
Cla002731Cucumber (Gy14) v2cgybwmB212
Cla002731Cucumber (Gy14) v2cgybwmB549
Cla002731Melon (DHL92) v3.6.1medwmB358
Cla002731Melon (DHL92) v3.6.1medwmB445
Cla002731Silver-seed gourdcarwmB0069
Cla002731Silver-seed gourdcarwmB0779
Cla002731Cucumber (Chinese Long) v3cucwmB231
Cla002731Cucumber (Chinese Long) v3cucwmB234
Cla002731Watermelon (97103) v2wmwmbB162
Cla002731Watermelon (97103) v2wmwmbB176
Cla002731Wax gourdwgowmB266
Cla002731Watermelon (97103) v1wmwmB100
Cla002731Watermelon (97103) v1wmwmB117
Cla002731Cucumber (Gy14) v1cgywmB084
Cla002731Cucumber (Gy14) v1cgywmB246
Cla002731Cucumber (Gy14) v1cgywmB476