Cla002727 (gene) Watermelon (97103) v1

NameCla002727
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionAlba-like protein C9orf23 (AHRD V1 **-- B5XCP9_SALSA); contains Interpro domain(s) IPR002775 Alba, DNA/RNA-binding protein
LocationChr7 : 413769 .. 419487 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGGTACCAGAAGGTCGAGAAACCTAAACCTGAATCTCCGATAAACGAAAATGAAATCCGCATCACCAGTCAAGGCGCTATTCGAAACTACATCACTTATGCTTCCACCCTGCTTCAGGTGTCATTTCACTGCTTCTTTTATTGTTTTCATTTATCATTGTATCTCATTTCACTTTTTCTTGTTGGTGTTCTGTGATATGCTGAATCTGTCTTATGAGGTTAGGTTTATGCTGTTTGGATTGTGGATGCACTAGACGTATTAGAAGATTTTCTTGGTTTTGATTATTTTTCATTTTCTTGGAATGTTAGCCGACATTTATTGGTTTGCTACATTTGCTGGTATATTGATTTCATTTCTTCTACTTGTGACTTTTGAGGAATAGTTGCTCGCTGGCTGATGCTTTGCCGTATATGCATTGTATGTGGAAGTGTCTGTTAGTTTAATGCACGAGCTATGGTACTTCTTAACATACGATAGCTCGTGAAATATCACCTGTTCTGTTGATTGTCTACAGTACATATAGTTTTTTCTTCTAGCTTATCGTGAATTAGTAGCTACTTCATTTTTCTTCACTTTACCTTGTAAAAAGAATAAAGATACGGTTGAATTTATGGTTTATAGTTTATACTGTATTCTCAGATCGAGTAATTACGCTAAGGCAGTGATCATGTGGAGCTTGGTGTTTCTATATTATCTTGACGTGATTTTTGCCTCAGGTTTCTACTATTCGTATACATTTCTTAATATATAAATTTACCATCACGATATAGCTACGAAGTTCTCTTTCTTATTAAAAGAATCATATGCACTAGAGCTTATGTTTCACAATGTATTACGATTACCAAATCTATTAAGTATGGTCATACAGTGATCGCATTTAAATGGTCATTTCTTTATTTTTGGCTCATGGGTTTCTTCAATTTGTTTAGTACTATTTTTTTAGTTTTGAAGAAGTTAATTATCGATGTTATTCATGGGTCAAGTTTAATGTCCTATGTTTATATATTCAATTAGCAGATGCATTGTTCTCAATATTGGCCAACATGAGCTATCGCACCTAATCGAGGCACTCTACCCCCTACCATAAGGCCTGAAATTTGAATCTGCACTCTACACACCATTGAATATTTCAAATCCTGATAGGCTTGGATTGCAAAAGTTAGGAATATTTAATCTTGGCCCAATTGAACGATTGTGGACAATTTTCATTATAACTGGAGCAACAGGAATTTCTTCTTCTTAAGTTAGTGTATAGTTCCTGAGTGTTCAGAATGTGTCAGTTTTGTCATCTGCTTTTATGATTGTTCATTTTGCTCCATTGTTTCACTACTTAAGTTGAAACCCTGGGTCTCCAAGTCTGGTTGTTCTAAAAGCTAGGTACTGAGATGAATTCATGCACAGCAATTAGTTTTTTCTGTTTGAGGGCTCTATATAATATCAAATCCTCTAAAGATATCAGAATAAAATAAATGATTGTGGTTTTGAAATAACATATGATGTTAACTTAATTTTGACTTATGGGAATTAAGTCCTTCAGAGAGTACCTTTCAGCTTTAGAAAATCATATGAAGTTGTTCCTCTCCGTTTCTGAAAACCCAACTATTTCCTCCCTCAAGGCTGAGCAAAGTTTTGTTTGTTTGGTTTTTAGGCTGAACCTAATCCTTACAAACTCAATTGTGTGCACCCAAGGAATCAAAGAATTTTCTTTTTCCACAAACGTCAATCCATGTTCAAAAAATGTCCTGCATTATTCTTCTTTCTCCTGATAAGTTCCATTTCTGGGGCATCTTGATGAAGGCTCTAGGATTAGTGTTTAATAGGTTTTGAGATTGAGGACCTGTCTCTATTTATCATTCCATTTACTTGATCAACTAGTCATTTGTGTGGGGGGAAGGGATTCCATATCTTGGCTTTTGAAGCCCTCTTAGGGCTTTTCCAGCAGTTCTTTCTTTGGGATCCTTTTTACCCCTTCTCCCTCTTGAGGATCCTCTTCGTTTTTCTTTTGAAGGTCAAAACTAAGAGTTTTAAATTTTAGAGTGAATACTCAAGATCAAATCCAGAGGCTGTTGCTGCCTCAATGGTGTCTCATTTATATGAAACATGAAGAAGGATCTTGACCATTTAATTTGGGATTGTGATTTTGCTACCTCTCTTTGGAACAGGTTCGTTTGGACCTTTGGGTTTGTGCTGGCTCGTAATAGAGGTTGTTGTTCGATGTTTGAGGAGGTGTTCTTGAATTCTCCTTTTTGTGTCAAAGGAAAGATTCTTTAGCAGTCTTATTCTTTTTGCTTTGTTGTGTGGCATTTGGCTTGAGAGGAATATTTTTTGTGGGGTTTGTGCTTGCTTGTAATAGAGGTTATTGTTTGATGTTAGAGGAGGTGTTCTTGAATTCTCCTTTTCGGGTCAAGGGAAAGATTCTTTAGCAGTCTTATTCTTTTTGCTTTGTTGCGGAGCATTTGGCTTGAGAGGAATATTTTTTGTGGGGTGGAGTAGTCTGGGGAGGACTTTGCGGTTACACTTAGGTTTAATGATGTTTACGTGTTATGTTTCTATTTGTTTGAAACCGAAAGTTGGAAAACTGGTTTGGATCATTCTCTATATTTGGATTTTGTGATTTCAAAATAAAATTTTATGATCTTTCATTTAACATAGTCAACAATAGAAAAAATATAGAAAGAAAACTAGAGAAAGTGAGTTGCTTAGACATGGCTTTACCAGCAATTGAAAATGTATTGCAGAGAGTATGTAATAAATGCACAGTTATTTGGGAACTCGTATAGTGCAACAGTTACTTGAAGACTGTTTTTCTAAGATATCCTTAGACATCAAAAATATTTTTGAAATCATACTTGAACATGAATTGAATTAAACCAGAATGATTTTGAAAAGGAAAAGAAAAAAGAAAGAAAATGTACCTTGTCAGCTAGTTCAATTTTGATTAGATAAATTTTAGTTGTTAGCTAATTTTTGATCCCCCTTGGTATCTTTGCTGTTTAAAAATGAACCTAGATATATAAGATCAAGGCTTTTTTTCCCTTGTTTATTCATATGTTTCTAAGCATTTGCTTACTGTCGGCTGAGAATGAATCCTTTTGTGTTTTGGTTTCATATTTTGTTTTCACTTTTAATCCAGGACAAACATGTTAAAGAGATAGTGTTGAAAGCCATGGGGCAGGCAATCAGTAAAGCGGTTGCCATTGCAGAAATTTTAAAGGTTTGAGTCCTTTACATTCTGCAACTGTGCATATGTAACCTATTTTATACTTAACAGGCCAGTTTCATTCTGAAACAGAAGAGAACTCCACGACTGCATCAAGAAACTTCCATCAGCTCAGTAAGCATAACTGATGTATGGGAACCTATTGAAGAAGGTCTTGTGCCGTAAGTTTTTAGTCTCTAGAATTATTCTCTGTTAATTGCCTGATGAAGACCTATACACGTACTCACGGTTTTGCCTTATGTGGGTTGGTACTCTTTAGTTTGCAATTGCAAATTTGCTTATTGTTTCTGCTGTGGGTATGTAGCTTTAGCGTTCTCTTTTGCAGATGTATAATAAATAACATCTGACATATGATGCAGTGTGGAGATGACTCGTCATGTCTCAATGATATCAATTACCTTGTCAAATCGAGAACTAAATAAAAACTCTCCTGGGTAAGAAAGTTTGGAAACTGTAGCTGTAGAATATGAAAGTCTACTCTTTGATGTGCTGTTTTCCATTTTTTACATTCAAGTTTCTTATTGCGAATGTTTTAGGATGAAAATTTTTGTTATTTGTAGGTATCAGGCTCCACAATTTGTGGAGCAGCCAAAGCAACAATATAATCAACAGCAACAGCCCAGACAGTCTCGTCCTTATTACAATGCTGTTAATGAAGGTGGTCCTTTTGTCTGGAAAATATAATATACTATTATTGTGAGATGTAGAGAATTTGACATCTTCCACCCTATTTTAGTGCAGCAACAGAAATACGTTAAAAAAACACGGAAACAGAATCATAAAATTAATGGCAACGGGGAGGGGCCGGAGATACACTCCTCATCCCTGTGCCCGCAGGGATTTTCCATCCATCCCCTCCCCATTCCCCGTTGTTCAGGTCTCCACATGAAAAATCTCCAATCTCCAATCTTCATGTTTTTATTTTTCTTTATTGTTTTTTTGATTAAATATTAATAAAAAGTTGATAAATATATTAAAATTGTATATACTTTTATATTTAAGTTAGTATTATCCTATTGCCAATGCCCCTAAACTCTAACTCTTAAGGCGATTTTGAAGGTAGACTGGATGTGGGTTTGAGATACTGGTTGGGAATCTAAAAGAAAGGAATCACTTGATGTTAATGGAGAATAACAGAATTTCATATTATAAGCACAAACCACAAAGATTTTCGCCTTATTGATTAGTAGCTTCCAATTAATTTTAATTCAATGCGGAGGTCACAGTTAATGTGTCTGGAAAATCTGTAAACAAAATTTAATGGAGATCATACTATTAACTGTTGGATTATGGTCCTCTTATGAACTCTGAGACTTTCCTGCATTTGGCAGATCCATATCGCCAAAGCCGAGGTCGAGGTAGAGGGAGAGGGAGAGGTTGGGGCAGAGGTGGATATGGAAACTACCAAGGGGGATATGGCAACTCCCAGGGTGGATATGGCCACTACCAGGGTGGATACGGCCACTACCAGGGCGGATCTGGTTATTACCAAGGCGGATCTGGCCACTATCAAGGTGGATCTGGCCACTATCAAGGTGGATCAAGCGGCTACCAAGGTGGATCCGGCGGCTACCAAGGCAACTATCAAGGTAGATAAGGTTTTGTCCTCTTTCTGTTACGGTCATGCTAATTCTTGAGTTAAGACCTAATTTTTAGTTTCTACTTTGTCGACATAGATAATGGTGGGTACTCAAATTGGAGTAGAGGTGGTGGGCGAGGCAGGGGTTGGACATATCGTGGTAAGTTTCTTTCTCAACTTTCTTCTCTTGTTCAGAATCTAACAAACTGTCATTTTACCGACTTTGTTGATTTTTGGTGCCACCTAACTCTTGATTAATCTCATGGAGGTATGAATTATGATCTGTATTTTTCAGGATTTCTTAAGAAAAAGAGATGGAATGTTTTCAAAGTGACCTCTTTAACTATTTCTTGGTTTAACCAATATTGGGTATTGAATTTTTGTAGGCGTCGTATGGCCCACCAACTTCTTAAGTTGGTGTAAACAACTCAATTTCAATAATAAACACTATTGAACTTGCACATATATTGAGTAACTTCATCTTCCCATTTATTTTTATATTTTTCACATTTACCAAGGAATTCTATCTTCTCCCATCTATACTTTTCACATTTACCAAGCTAATTCCATCCTACTTTCTTAATCTACTTTTTGTTATTATCGAGGAACTCAATTTTACAACTTTACATCCCAAACACAAACTTACTAGCAACATATTAACCTCATACTTATTAACTCTCCTCAATGGGTCAAACGCCCCATTGGTTTATGTCAAATCCATATCCTTCTAGAATGTGTTGAAAATGATCAAGTGTGGATAGAATGGATCAAGCTGATTGTTCGAATCAATTGCATTCCTTTCAGGAACTGGCTATGATAGAGGCAGAGGGGGTAGGAGTTACAGTCGAGGTCGGGGGCGGATAGGCGGACTAACAAGGGATGGTGGTGGGGGCGGTGGTAGAAACCAGGTTTAG

mRNA sequence

ATGGATAGGTACCAGAAGGTCGAGAAACCTAAACCTGAATCTCCGATAAACGAAAATGAAATCCGCATCACCAGTCAAGGCGCTATTCGAAACTACATCACTTATGCTTCCACCCTGCTTCAGGACAAACATGTTAAAGAGATAGTGTTGAAAGCCATGGGGCAGGCAATCAGTAAAGCGGTTGCCATTGCAGAAATTTTAAAGGCCAGTTTCATTCTGAAACAGAAGAGAACTCCACGACTGCATCAAGAAACTTCCATCAGCTCAGTAAGCATAACTGATGTATGGGAACCTATTGAAGAAGGTCTTGTGCCTGTGGAGATGACTCGTCATGTCTCAATGATATCAATTACCTTGTCAAATCGAGAACTAAATAAAAACTCTCCTGGGTATCAGGCTCCACAATTTGTGGAGCAGCCAAAGCAACAATATAATCAACAGCAACAGCCCAGACAGTCTCGTCCTTATTACAATGCTGTTAATGAAGATAATGGTGGGTACTCAAATTGGAGTAGAGGTGGTGGGCGAGGCAGGGGTTGGACATATCGTGGAACTGGCTATGATAGAGGCAGAGGGGGTAGGAGTTACAGTCGAGGTCGGGGGCGGATAGGCGGACTAACAAGGGATGGTGGTGGGGGCGGTGGTAGAAACCAGGTTTAG

Coding sequence (CDS)

ATGGATAGGTACCAGAAGGTCGAGAAACCTAAACCTGAATCTCCGATAAACGAAAATGAAATCCGCATCACCAGTCAAGGCGCTATTCGAAACTACATCACTTATGCTTCCACCCTGCTTCAGGACAAACATGTTAAAGAGATAGTGTTGAAAGCCATGGGGCAGGCAATCAGTAAAGCGGTTGCCATTGCAGAAATTTTAAAGGCCAGTTTCATTCTGAAACAGAAGAGAACTCCACGACTGCATCAAGAAACTTCCATCAGCTCAGTAAGCATAACTGATGTATGGGAACCTATTGAAGAAGGTCTTGTGCCTGTGGAGATGACTCGTCATGTCTCAATGATATCAATTACCTTGTCAAATCGAGAACTAAATAAAAACTCTCCTGGGTATCAGGCTCCACAATTTGTGGAGCAGCCAAAGCAACAATATAATCAACAGCAACAGCCCAGACAGTCTCGTCCTTATTACAATGCTGTTAATGAAGATAATGGTGGGTACTCAAATTGGAGTAGAGGTGGTGGGCGAGGCAGGGGTTGGACATATCGTGGAACTGGCTATGATAGAGGCAGAGGGGGTAGGAGTTACAGTCGAGGTCGGGGGCGGATAGGCGGACTAACAAGGGATGGTGGTGGGGGCGGTGGTAGAAACCAGGTTTAG

Protein sequence

MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKHVKEIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYNQQQQPRQSRPYYNAVNEDNGGYSNWSRGGGRGRGWTYRGTGYDRGRGGRSYSRGRGRIGGLTRDGGGGGGRNQV
BLAST of Cla002727 vs. Swiss-Prot
Match: RP25L_HUMAN (Ribonuclease P protein subunit p25-like protein OS=Homo sapiens GN=RPP25L PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-11
Identity = 46/143 (32.17%), Postives = 66/143 (46.15%), Query Frame = 1

Query: 1   MDRYQKV-------EKPKPESPINENEIRITSQGAIRNYITYASTLLQDKHVKEIVLKAM 60
           M+ Y+K          P P+ P +  E+R+     IRN +  A   L+    + +V    
Sbjct: 1   MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60

Query: 61  GQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPI--EEGLVPVEMTRH 120
           G+A  KAV+ AEI+K       +R P LHQ T +  +   D W P   + GL P+ + RH
Sbjct: 61  GRAAGKAVSCAEIVK-------RRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRH 120

Query: 121 VSMISITLSNRELNKNSPGYQAP 135
           V  + + LS   L+ N  GYQ P
Sbjct: 121 VPAVWVLLSRDPLDPNECGYQPP 136

BLAST of Cla002727 vs. Swiss-Prot
Match: RP25L_MOUSE (Ribonuclease P protein subunit p25-like protein OS=Mus musculus GN=Rpp25l PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.6e-11
Identity = 42/127 (33.07%), Postives = 61/127 (48.03%), Query Frame = 1

Query: 10  PKPESPINENEIRITSQGAIRNYITYASTLLQDKHVKEIVLKAMGQAISKAVAIAEILKA 69
           P P+ P +  E+R+     IRN +  A   L+    + +V    G+A  KAV+ AEI+K 
Sbjct: 17  PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGSGRAAGKAVSCAEIVK- 76

Query: 70  SFILKQKRTPRLHQETSISSVSITDVWEPI--EEGLVPVEMTRHVSMISITLSNRELNKN 129
                 +R P LHQ T +  +   D W P   + GL P+ + RHV  + + LS   L+ +
Sbjct: 77  ------RRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPS 136

Query: 130 SPGYQAP 135
             GYQ P
Sbjct: 137 ECGYQPP 136

BLAST of Cla002727 vs. Swiss-Prot
Match: RP25L_BOVIN (Ribonuclease P protein subunit p25-like protein OS=Bos taurus GN=RPP25L PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.2e-10
Identity = 44/143 (30.77%), Postives = 66/143 (46.15%), Query Frame = 1

Query: 1   MDRYQKV-------EKPKPESPINENEIRITSQGAIRNYITYASTLLQDKHVKEIVLKAM 60
           M+ Y+K          P P+ P +  E+R+ +   IRN +  A   L+    + +V    
Sbjct: 1   MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRAGSKIRNLLGLALERLEGGSARHVVFSGS 60

Query: 61  GQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPI--EEGLVPVEMTRH 120
           G+A  KAV+ AEI+K       +R P L+Q T +  +   D W P   + GL P+ +  H
Sbjct: 61  GRAAGKAVSCAEIVK-------RRVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSH 120

Query: 121 VSMISITLSNRELNKNSPGYQAP 135
           V  + + LS   L+ N  GYQ P
Sbjct: 121 VPAVWVLLSRDPLDPNEYGYQPP 136

BLAST of Cla002727 vs. Swiss-Prot
Match: RPP25_MOUSE (Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.1e-07
Identity = 42/166 (25.30%), Postives = 69/166 (41.57%), Query Frame = 1

Query: 21  IRITSQGAIRNYITYASTLLQDKHVKEIVLKAMGQAISKAVAIAEILKASFILKQKRTPR 80
           +R+     IRN + +A+  +     + IV    G+A +K V  AEILK       +R   
Sbjct: 38  MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILK-------RRLAG 97

Query: 81  LHQETSISSVSITDVWEPIEEGLVP----------VEMTRHVSMISITLSNRELNKNSPG 140
           LHQ T +   S+ +VW+ +  G  P          + + ++V  ++I LS   L+    G
Sbjct: 98  LHQVTRLRYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLG 157

Query: 141 YQAPQFVEQPK-------------QQYNQQQQPRQSRPYYNAVNED 164
           YQ P     P              +   ++   ++S+P   A NED
Sbjct: 158 YQPPNLSPGPSSPPTVSTSKRSLGESAAEEGTAKRSQPEPEAENED 196

BLAST of Cla002727 vs. Swiss-Prot
Match: RPP25_RAT (Ribonuclease P protein subunit p25 OS=Rattus norvegicus GN=Rpp25 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 36/130 (27.69%), Postives = 57/130 (43.85%), Query Frame = 1

Query: 21  IRITSQGAIRNYITYASTLLQDKHVKEIVLKAMGQAISKAVAIAEILKASFILKQKRTPR 80
           +R+     IRN + +A+  +     + IV    G+A +K V  AEILK       +R   
Sbjct: 38  MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILK-------RRLAG 97

Query: 81  LHQETSISSVSITDVWEPIEEGLVP----------VEMTRHVSMISITLSNRELNKNSPG 140
           LHQ T +   S+ +VW+ +  G  P          + + ++V  ++I LS   L+    G
Sbjct: 98  LHQVTRLRYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLG 157

BLAST of Cla002727 vs. TrEMBL
Match: A0A0D2SDS3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G153000 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 1.0e-86
Identity = 177/245 (72.24%), Postives = 184/245 (75.10%), Query Frame = 1

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKHVKEIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYI YA  LLQDKHVKEIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYINYAIALLQDKHVKEIVLKAMGQAISKT 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           VAIAEILK       KR PRLHQ+TSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS
Sbjct: 61  VAIAEILK-------KRIPRLHQDTSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPKQQYNQQQQ--PRQSRPYYNAVNED--------------- 180
            RELNKNS GYQAP + EQPK QY+ QQQ  P+Q R  YNAVNED               
Sbjct: 121 TRELNKNSVGYQAPHYAEQPKPQYHYQQQQLPKQGRIPYNAVNEDSYGRGRGRGRGRGRG 180

Query: 181 -------------NGGYSNWSRGGGRGRGWTYRGTGYDRGR--GGRSYSRGRGRIGGLTR 214
                        NGGYSNW RGGGRGRGW YRG GY+RGR  GGR +SRGRGR+GG  R
Sbjct: 181 RSWGRGGYGNYQDNGGYSNWGRGGGRGRGWGYRGAGYERGRGGGGRGFSRGRGRMGGGGR 238

BLAST of Cla002727 vs. TrEMBL
Match: A0A061DMM4_THECC (Alba DNA/RNA-binding protein isoform 1 OS=Theobroma cacao GN=TCM_002984 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.3e-86
Identity = 178/248 (71.77%), Postives = 188/248 (75.81%), Query Frame = 1

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKHVKEIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYI YA  LLQDK VKEIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYINYAIALLQDKRVKEIVLKAMGQAISKT 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           VAIAEI+K       KR PRLHQ+T+ISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS
Sbjct: 61  VAIAEIIK-------KRIPRLHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPKQQYN--QQQQPRQSRPYYNAVNE---------------- 180
            RELNKNS GYQAP +VEQPK QY+  QQQ P+Q+R  YNAVNE                
Sbjct: 121 ARELNKNSAGYQAPHYVEQPKPQYHYQQQQPPKQARIPYNAVNEDSYGQGRGRGRGRGRN 180

Query: 181 ----------DNGGYSNWSRGGGRGRGWTYRGTGYDRGR--GGRSYSRGRGRIGGLTRDG 216
                     DNGGYSNW RGGGRGRGW YRG+GY+RGR  GGR YSRGRGR+GG    G
Sbjct: 181 WARGGYGNYQDNGGYSNWGRGGGRGRGWGYRGSGYERGRGGGGRGYSRGRGRMGGGRSRG 240

BLAST of Cla002727 vs. TrEMBL
Match: A0A061DMC1_THECC (Alba DNA/RNA-binding protein isoform 5 (Fragment) OS=Theobroma cacao GN=TCM_002984 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 3.9e-86
Identity = 177/259 (68.34%), Postives = 189/259 (72.97%), Query Frame = 1

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKHVKEIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYI YA  LLQDK VKEIVLKAMGQAISK 
Sbjct: 53  MDRYQKVEKPKPESPINENEIRITSQGAIRNYINYAIALLQDKRVKEIVLKAMGQAISKT 112

Query: 61  VAIAEILKASFI------------------LKQKRTPRLHQETSISSVSITDVWEPIEEG 120
           VAIAEI+K  F+                  +KQKR PRLHQ+T+ISSVSITDVWEPIEEG
Sbjct: 113 VAIAEIIKVGFLFYHPCILFSHFPGLVICLVKQKRIPRLHQDTAISSVSITDVWEPIEEG 172

Query: 121 LVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYN--QQQQPRQSRPYYNAV 180
           LVPVEMTRHVSMISITLS RELNKNS GYQAP +VEQPK QY+  QQQ P+Q+R  YNAV
Sbjct: 173 LVPVEMTRHVSMISITLSARELNKNSAGYQAPHYVEQPKPQYHYQQQQPPKQARIPYNAV 232

Query: 181 NE--------------------------DNGGYSNWSRGGGRGRGWTYRGTGYDRGR--G 212
           NE                          DNGGYSNW RGGGRGRGW YRG+GY+RGR  G
Sbjct: 233 NEDSYGQGRGRGRGRGRNWARGGYGNYQDNGGYSNWGRGGGRGRGWGYRGSGYERGRGGG 292

BLAST of Cla002727 vs. TrEMBL
Match: A0A061DNF0_THECC (Alba DNA/RNA-binding protein isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_002984 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 3.3e-85
Identity = 174/241 (72.20%), Postives = 184/241 (76.35%), Query Frame = 1

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKHVKEIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYI YA  LLQDK VKEIVLKAMGQAISK 
Sbjct: 12  MDRYQKVEKPKPESPINENEIRITSQGAIRNYINYAIALLQDKRVKEIVLKAMGQAISKT 71

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           VAIAEI+K       KR PRLHQ+T+ISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS
Sbjct: 72  VAIAEIIK-------KRIPRLHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 131

Query: 121 NRELNKNSPGYQAPQFVEQPKQQYN--QQQQPRQSRPYYNAVNE---------------- 180
            RELNKNS GYQAP +VEQPK QY+  QQQ P+Q+R  YNAVNE                
Sbjct: 132 ARELNKNSAGYQAPHYVEQPKPQYHYQQQQPPKQARIPYNAVNEDSYGQGRGRGRGRGRN 191

Query: 181 ----------DNGGYSNWSRGGGRGRGWTYRGTGYDRGR--GGRSYSRGRGRIGGLTRDG 212
                     DNGGYSNW RGGGRGRGW YRG+GY+RGR  GGR YSRGRGR+GG    G
Sbjct: 192 WARGGYGNYQDNGGYSNWGRGGGRGRGWGYRGSGYERGRGGGGRGYSRGRGRMGGGRSRG 245

BLAST of Cla002727 vs. TrEMBL
Match: A0A061DPE3_THECC (Alba DNA/RNA-binding protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_002984 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 3.3e-85
Identity = 174/241 (72.20%), Postives = 184/241 (76.35%), Query Frame = 1

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKHVKEIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYI YA  LLQDK VKEIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYINYAIALLQDKRVKEIVLKAMGQAISKT 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           VAIAEI+K       KR PRLHQ+T+ISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS
Sbjct: 61  VAIAEIIK-------KRIPRLHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPKQQYN--QQQQPRQSRPYYNAVNE---------------- 180
            RELNKNS GYQAP +VEQPK QY+  QQQ P+Q+R  YNAVNE                
Sbjct: 121 ARELNKNSAGYQAPHYVEQPKPQYHYQQQQPPKQARIPYNAVNEDSYGQGRGRGRGRGRN 180

Query: 181 ----------DNGGYSNWSRGGGRGRGWTYRGTGYDRGR--GGRSYSRGRGRIGGLTRDG 212
                     DNGGYSNW RGGGRGRGW YRG+GY+RGR  GGR YSRGRGR+GG    G
Sbjct: 181 WARGGYGNYQDNGGYSNWGRGGGRGRGWGYRGSGYERGRGGGGRGYSRGRGRMGGGRSRG 234

BLAST of Cla002727 vs. NCBI nr
Match: gi|823189352|ref|XP_012490804.1| (PREDICTED: ribonuclease P protein subunit p25-like protein [Gossypium raimondii])

HSP 1 Score: 327.8 bits (839), Expect = 1.5e-86
Identity = 177/245 (72.24%), Postives = 184/245 (75.10%), Query Frame = 1

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKHVKEIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYI YA  LLQDKHVKEIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYINYAIALLQDKHVKEIVLKAMGQAISKT 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           VAIAEILK       KR PRLHQ+TSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS
Sbjct: 61  VAIAEILK-------KRIPRLHQDTSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPKQQYNQQQQ--PRQSRPYYNAVNED--------------- 180
            RELNKNS GYQAP + EQPK QY+ QQQ  P+Q R  YNAVNED               
Sbjct: 121 TRELNKNSVGYQAPHYAEQPKPQYHYQQQQLPKQGRIPYNAVNEDSYGRGRGRGRGRGRG 180

Query: 181 -------------NGGYSNWSRGGGRGRGWTYRGTGYDRGR--GGRSYSRGRGRIGGLTR 214
                        NGGYSNW RGGGRGRGW YRG GY+RGR  GGR +SRGRGR+GG  R
Sbjct: 181 RSWGRGGYGNYQDNGGYSNWGRGGGRGRGWGYRGAGYERGRGGGGRGFSRGRGRMGGGGR 238

BLAST of Cla002727 vs. NCBI nr
Match: gi|590714052|ref|XP_007049808.1| (Alba DNA/RNA-binding protein isoform 1 [Theobroma cacao])

HSP 1 Score: 326.6 bits (836), Expect = 3.2e-86
Identity = 178/248 (71.77%), Postives = 188/248 (75.81%), Query Frame = 1

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKHVKEIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYI YA  LLQDK VKEIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYINYAIALLQDKRVKEIVLKAMGQAISKT 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           VAIAEI+K       KR PRLHQ+T+ISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS
Sbjct: 61  VAIAEIIK-------KRIPRLHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPKQQYN--QQQQPRQSRPYYNAVNE---------------- 180
            RELNKNS GYQAP +VEQPK QY+  QQQ P+Q+R  YNAVNE                
Sbjct: 121 ARELNKNSAGYQAPHYVEQPKPQYHYQQQQPPKQARIPYNAVNEDSYGQGRGRGRGRGRN 180

Query: 181 ----------DNGGYSNWSRGGGRGRGWTYRGTGYDRGR--GGRSYSRGRGRIGGLTRDG 216
                     DNGGYSNW RGGGRGRGW YRG+GY+RGR  GGR YSRGRGR+GG    G
Sbjct: 181 WARGGYGNYQDNGGYSNWGRGGGRGRGWGYRGSGYERGRGGGGRGYSRGRGRMGGGRSRG 240

BLAST of Cla002727 vs. NCBI nr
Match: gi|590714067|ref|XP_007049812.1| (Alba DNA/RNA-binding protein isoform 5, partial [Theobroma cacao])

HSP 1 Score: 325.9 bits (834), Expect = 5.5e-86
Identity = 177/259 (68.34%), Postives = 189/259 (72.97%), Query Frame = 1

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKHVKEIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYI YA  LLQDK VKEIVLKAMGQAISK 
Sbjct: 53  MDRYQKVEKPKPESPINENEIRITSQGAIRNYINYAIALLQDKRVKEIVLKAMGQAISKT 112

Query: 61  VAIAEILKASFI------------------LKQKRTPRLHQETSISSVSITDVWEPIEEG 120
           VAIAEI+K  F+                  +KQKR PRLHQ+T+ISSVSITDVWEPIEEG
Sbjct: 113 VAIAEIIKVGFLFYHPCILFSHFPGLVICLVKQKRIPRLHQDTAISSVSITDVWEPIEEG 172

Query: 121 LVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYN--QQQQPRQSRPYYNAV 180
           LVPVEMTRHVSMISITLS RELNKNS GYQAP +VEQPK QY+  QQQ P+Q+R  YNAV
Sbjct: 173 LVPVEMTRHVSMISITLSARELNKNSAGYQAPHYVEQPKPQYHYQQQQPPKQARIPYNAV 232

Query: 181 NE--------------------------DNGGYSNWSRGGGRGRGWTYRGTGYDRGR--G 212
           NE                          DNGGYSNW RGGGRGRGW YRG+GY+RGR  G
Sbjct: 233 NEDSYGQGRGRGRGRGRNWARGGYGNYQDNGGYSNWGRGGGRGRGWGYRGSGYERGRGGG 292

BLAST of Cla002727 vs. NCBI nr
Match: gi|590714056|ref|XP_007049809.1| (Alba DNA/RNA-binding protein isoform 2, partial [Theobroma cacao])

HSP 1 Score: 322.8 bits (826), Expect = 4.7e-85
Identity = 174/241 (72.20%), Postives = 184/241 (76.35%), Query Frame = 1

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKHVKEIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYI YA  LLQDK VKEIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYINYAIALLQDKRVKEIVLKAMGQAISKT 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           VAIAEI+K       KR PRLHQ+T+ISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS
Sbjct: 61  VAIAEIIK-------KRIPRLHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPKQQYN--QQQQPRQSRPYYNAVNE---------------- 180
            RELNKNS GYQAP +VEQPK QY+  QQQ P+Q+R  YNAVNE                
Sbjct: 121 ARELNKNSAGYQAPHYVEQPKPQYHYQQQQPPKQARIPYNAVNEDSYGQGRGRGRGRGRN 180

Query: 181 ----------DNGGYSNWSRGGGRGRGWTYRGTGYDRGR--GGRSYSRGRGRIGGLTRDG 212
                     DNGGYSNW RGGGRGRGW YRG+GY+RGR  GGR YSRGRGR+GG    G
Sbjct: 181 WARGGYGNYQDNGGYSNWGRGGGRGRGWGYRGSGYERGRGGGGRGYSRGRGRMGGGRSRG 234

BLAST of Cla002727 vs. NCBI nr
Match: gi|590714060|ref|XP_007049810.1| (Alba DNA/RNA-binding protein isoform 3, partial [Theobroma cacao])

HSP 1 Score: 322.8 bits (826), Expect = 4.7e-85
Identity = 174/241 (72.20%), Postives = 184/241 (76.35%), Query Frame = 1

Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKHVKEIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYI YA  LLQDK VKEIVLKAMGQAISK 
Sbjct: 12  MDRYQKVEKPKPESPINENEIRITSQGAIRNYINYAIALLQDKRVKEIVLKAMGQAISKT 71

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           VAIAEI+K       KR PRLHQ+T+ISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS
Sbjct: 72  VAIAEIIK-------KRIPRLHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 131

Query: 121 NRELNKNSPGYQAPQFVEQPKQQYN--QQQQPRQSRPYYNAVNE---------------- 180
            RELNKNS GYQAP +VEQPK QY+  QQQ P+Q+R  YNAVNE                
Sbjct: 132 ARELNKNSAGYQAPHYVEQPKPQYHYQQQQPPKQARIPYNAVNEDSYGQGRGRGRGRGRN 191

Query: 181 ----------DNGGYSNWSRGGGRGRGWTYRGTGYDRGR--GGRSYSRGRGRIGGLTRDG 212
                     DNGGYSNW RGGGRGRGW YRG+GY+RGR  GGR YSRGRGR+GG    G
Sbjct: 192 WARGGYGNYQDNGGYSNWGRGGGRGRGWGYRGSGYERGRGGGGRGYSRGRGRMGGGRSRG 245

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RP25L_HUMAN1.5e-1132.17Ribonuclease P protein subunit p25-like protein OS=Homo sapiens GN=RPP25L PE=1 S... [more]
RP25L_MOUSE7.6e-1133.07Ribonuclease P protein subunit p25-like protein OS=Mus musculus GN=Rpp25l PE=1 S... [more]
RP25L_BOVIN2.2e-1030.77Ribonuclease P protein subunit p25-like protein OS=Bos taurus GN=RPP25L PE=2 SV=... [more]
RPP25_MOUSE5.1e-0725.30Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2 SV=1[more]
RPP25_RAT1.1e-0627.69Ribonuclease P protein subunit p25 OS=Rattus norvegicus GN=Rpp25 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0D2SDS3_GOSRA1.0e-8672.24Uncharacterized protein OS=Gossypium raimondii GN=B456_007G153000 PE=4 SV=1[more]
A0A061DMM4_THECC2.3e-8671.77Alba DNA/RNA-binding protein isoform 1 OS=Theobroma cacao GN=TCM_002984 PE=4 SV=... [more]
A0A061DMC1_THECC3.9e-8668.34Alba DNA/RNA-binding protein isoform 5 (Fragment) OS=Theobroma cacao GN=TCM_0029... [more]
A0A061DNF0_THECC3.3e-8572.20Alba DNA/RNA-binding protein isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_0029... [more]
A0A061DPE3_THECC3.3e-8572.20Alba DNA/RNA-binding protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_0029... [more]
Match NameE-valueIdentityDescription
gi|823189352|ref|XP_012490804.1|1.5e-8672.24PREDICTED: ribonuclease P protein subunit p25-like protein [Gossypium raimondii][more]
gi|590714052|ref|XP_007049808.1|3.2e-8671.77Alba DNA/RNA-binding protein isoform 1 [Theobroma cacao][more]
gi|590714067|ref|XP_007049812.1|5.5e-8668.34Alba DNA/RNA-binding protein isoform 5, partial [Theobroma cacao][more]
gi|590714056|ref|XP_007049809.1|4.7e-8572.20Alba DNA/RNA-binding protein isoform 2, partial [Theobroma cacao][more]
gi|590714060|ref|XP_007049810.1|4.7e-8572.20Alba DNA/RNA-binding protein isoform 3, partial [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002775DNA/RNA-bd_Alba-like
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0008033 tRNA processing
biological_process GO:0008150 biological_process
cellular_component GO:0005829 cytosol
cellular_component GO:0030677 ribonuclease P complex
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004526 ribonuclease P activity
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU70261watermelon EST collection version 2.0transcribed_cluster
WMU79181watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002727Cla002727.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU79181WMU79181transcribed_cluster
WMU70261WMU70261transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002775DNA/RNA-binding protein Alba-likeGENE3DG3DSA:3.30.110.20coord: 10..120
score: 5.6
IPR002775DNA/RNA-binding protein Alba-likePFAMPF01918Albacoord: 19..72
score: 3.7
IPR002775DNA/RNA-binding protein Alba-likeunknownSSF82704AlbA-likecoord: 16..123
score: 3.01
NoneNo IPR availablePRODOMPD010497coord: 29..72
score: 0
NoneNo IPR availablePANTHERPTHR13516RIBONUCLEASE P SUBUNIT P25coord: 2..217
score: 4.0E
NoneNo IPR availablePANTHERPTHR13516:SF3ALBA DNA/RNA-BINDING PROTEINcoord: 2..217
score: 4.0E

The following gene(s) are paralogous to this gene:

None