Cla002712 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002712
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	B-cell receptor-associated protein 31-like protein (AHRD V1 ***- Q9FJK4_ARATH); contains Interpro domain(s) IPR008417 B-cell receptor-associated 31-like
Location	Chr7 : 275156 .. 275654 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCAGTTATTGTTCTTGGTTCTTTTTGCTGAGGGAGTGGTGGCATTTCTCTTGCTTGTAAAGATTGGGTTACTGAGAGAGTTTGTCATTAAGAGTTTAGATCAGCTGAAAATGGGTAAAGGTCCAGCAACTGTTAAAACAATTGCAGCTACCATGTCTGTCATTCTCTTGTCCAGTCTTATGAACATTGTTAAGATCCAGAACAAAGGTGCAAAGCTTGGGACAATGTCACCCATGGATCAGGTTCTTTGGAGGACACAATTGCTTGAGGCTTCACTCATTGGTATGTTCCAGTTCATTGGCTGTTTAGATTTGTGTGCTTTGATTGGTATTTTTATTCTGTAGTCTTTGCACTCGTCTTTTAAGTCAGTTTTCCATTTCCTGCCCTGCAATGTTCTACTAGTTTGAAGATAAATAATTGATCTCTCTGTCAAGTGACAAGGAAATATTACTAATGCTTTTTGTAGCTAATTCTAATGGTCATTACTGGAATTGA

mRNA sequence

ATGATTCAGTTATTGTTCTTGGTTCTTTTTGCTGAGGGAGTGGTGGCATTTCTCTTGCTTGTAAAGATTGGGTTACTGAGAGAGTTTGTCATTAAGAGTTTAGATCAGCTGAAAATGGGTAAAGGTCCAGCAACTGTTAAAACAATTGCAGCTACCATGTCTGTCATTCTCTTGTCCAGTCTTATGAACATTGTTAAGATCCAGAACAAAGGTGCAAAGCTTGGGACAATGTCACCCATGGATCAGGTTCTTTGGAGGACACAATTGCTTGAGGCTTCACTCATTGCTAATTCTAATGGTCATTACTGGAATTGA

Coding sequence (CDS)

ATGATTCAGTTATTGTTCTTGGTTCTTTTTGCTGAGGGAGTGGTGGCATTTCTCTTGCTTGTAAAGATTGGGTTACTGAGAGAGTTTGTCATTAAGAGTTTAGATCAGCTGAAAATGGGTAAAGGTCCAGCAACTGTTAAAACAATTGCAGCTACCATGTCTGTCATTCTCTTGTCCAGTCTTATGAACATTGTTAAGATCCAGAACAAAGGTGCAAAGCTTGGGACAATGTCACCCATGGATCAGGTTCTTTGGAGGACACAATTGCTTGAGGCTTCACTCATTGCTAATTCTAATGGTCATTACTGGAATTGA

Protein sequence

MIQLLFLVLFAEGVVAFLLLVKIGLLREFVIKSLDQLKMGKGPATVKTIAATMSVILLSSLMNIVKIQNKGAKLGTMSPMDQVLWRTQLLEASLIANSNGHYWN

Homology

[Close]

BLAST of Cla002712 vs. TrEMBL
Match: A0A0A0LE44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G629240 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.1e-41
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 1


Query: 1  MIQLLFLVLFAEGVVAFLLLVKIGLLREFVIKSLDQLKMGKGPATVKTIAATMSVILLSS 60
          MIQLLFLVLFAEGVVA LLLVKIGLLREFVIKSLDQLKMGKGPATVKTIAATMSVILLSS
Sbjct: 1  MIQLLFLVLFAEGVVALLLLVKIGLLREFVIKSLDQLKMGKGPATVKTIAATMSVILLSS 60

Query: 61 LMNIVKIQNKGAKLGTMSPMDQVLWRTQLLEASLI 96
          LMNIVKIQNKGAKLGTMSPMDQVLWRTQLLEASLI
Sbjct: 61 LMNIVKIQNKGAKLGTMSPMDQVLWRTQLLEASLI 95

[Close]

BLAST of Cla002712 vs. TrEMBL
Match: B9S4Z8_RICCO (Bcr-associated protein, bap, putative OS=Ricinus communis GN=RCOM_1719170 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 5.4e-38
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 1


Query: 1  MIQLLFLVLFAEGVVAFLLLVKIGLLREFVIKSLDQLKMGKGPATVKTIAATMSVILLSS 60
          MIQLLFLVLFAEG+VA LLLVKIG LRE VIKSLDQLKMGKGPATVKTIA+TMSVILLSS
Sbjct: 1  MIQLLFLVLFAEGIVALLLLVKIGPLRELVIKSLDQLKMGKGPATVKTIASTMSVILLSS 60

Query: 61 LMNIVKIQNKGAKLGTMSPMDQVLWRTQLLEASLI 96
          LM+I+KIQNKGAKLGTMSPMDQVLWRT LLEASLI
Sbjct: 61 LMSIIKIQNKGAKLGTMSPMDQVLWRTHLLEASLI 95

[Close]

BLAST of Cla002712 vs. TrEMBL
Match: A0A067JU89_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17521 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 7.1e-38
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 1


Query: 1  MIQLLFLVLFAEGVVAFLLLVKIGLLREFVIKSLDQLKMGKGPATVKTIAATMSVILLSS 60
          MIQLLFLVLFAEGVVAFLLLVKIG LRE V+KSLDQ+KMGKGPATVKTIA TMSVILLSS
Sbjct: 1  MIQLLFLVLFAEGVVAFLLLVKIGPLRELVLKSLDQVKMGKGPATVKTIAGTMSVILLSS 60

Query: 61 LMNIVKIQNKGAKLGTMSPMDQVLWRTQLLEASLI 96
          LM+IVKIQNKGAKLGTMSPMDQVLWRT LLEASL+
Sbjct: 61 LMSIVKIQNKGAKLGTMSPMDQVLWRTHLLEASLM 95

[Close]

BLAST of Cla002712 vs. TrEMBL
Match: A0A151RRL7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_033263 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 7.1e-38
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 1


Query: 1  MIQLLFLVLFAEGVVAFLLLVKIGLLREFVIKSLDQLKMGKGPATVKTIAATMSVILLSS 60
          MIQLLFLV+FAEG +AFLLLVKIG LR+ VIKSLDQLKMGKGPATVKTIA TMSVILLSS
Sbjct: 1  MIQLLFLVIFAEGAIAFLLLVKIGPLRDLVIKSLDQLKMGKGPATVKTIAGTMSVILLSS 60

Query: 61 LMNIVKIQNKGAKLGTMSPMDQVLWRTQLLEASLI 96
          LMNIVKIQNKGAKLGTMSPMDQVLWRT LLEASL+
Sbjct: 61 LMNIVKIQNKGAKLGTMSPMDQVLWRTHLLEASLM 95

[Close]

BLAST of Cla002712 vs. TrEMBL
Match: A0A0D2PVS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G232500 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 9.2e-38
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 1


Query: 1  MIQLLFLVLFAEGVVAFLLLVKIGLLREFVIKSLDQLKMGKGPATVKTIAATMSVILLSS 60
          MIQLLFLVLFAEG +AFLLLVKIG LRE VIKS+DQLKMGKGPATVKTIA TMSVILLSS
Sbjct: 1  MIQLLFLVLFAEGAMAFLLLVKIGPLRELVIKSIDQLKMGKGPATVKTIAGTMSVILLSS 60

Query: 61 LMNIVKIQNKGAKLGTMSPMDQVLWRTQLLEASLI 96
          LM+IVKIQNKGAKLGTMSPMDQVLWRT LLEASLI
Sbjct: 61 LMSIVKIQNKGAKLGTMSPMDQVLWRTHLLEASLI 95

[Close]

BLAST of Cla002712 vs. NCBI nr
Match: gi|659120825|ref|XP_008460368.1| (PREDICTED: B-cell receptor-associated protein 31-like [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 8.9e-42
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1  MIQLLFLVLFAEGVVAFLLLVKIGLLREFVIKSLDQLKMGKGPATVKTIAATMSVILLSS 60
          MIQLLFLVLFAEGVVAFLLLVKIGLLREFVIKSLDQLKMGKGPATVKTIAATMSVILLSS
Sbjct: 1  MIQLLFLVLFAEGVVAFLLLVKIGLLREFVIKSLDQLKMGKGPATVKTIAATMSVILLSS 60

Query: 61 LMNIVKIQNKGAKLGTMSPMDQVLWRTQLLEASLI 96
          LMNIVKIQNKGAKLGTMSPMDQVLWRTQLLEASLI
Sbjct: 61 LMNIVKIQNKGAKLGTMSPMDQVLWRTQLLEASLI 95

[Close]

BLAST of Cla002712 vs. NCBI nr
Match: gi|449453280|ref|XP_004144386.1| (PREDICTED: uncharacterized protein LOC101213598 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 4.4e-41
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 1


Query: 1  MIQLLFLVLFAEGVVAFLLLVKIGLLREFVIKSLDQLKMGKGPATVKTIAATMSVILLSS 60
          MIQLLFLVLFAEGVVA LLLVKIGLLREFVIKSLDQLKMGKGPATVKTIAATMSVILLSS
Sbjct: 1  MIQLLFLVLFAEGVVALLLLVKIGLLREFVIKSLDQLKMGKGPATVKTIAATMSVILLSS 60

Query: 61 LMNIVKIQNKGAKLGTMSPMDQVLWRTQLLEASLI 96
          LMNIVKIQNKGAKLGTMSPMDQVLWRTQLLEASLI
Sbjct: 61 LMNIVKIQNKGAKLGTMSPMDQVLWRTQLLEASLI 95

[Close]

BLAST of Cla002712 vs. NCBI nr
Match: gi|223539636|gb|EEF41218.1| (bcr-associated protein, bap, putative [Ricinus communis])

HSP 1 Score: 164.9 bits (416), Expect = 7.8e-38
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 1


Query: 1  MIQLLFLVLFAEGVVAFLLLVKIGLLREFVIKSLDQLKMGKGPATVKTIAATMSVILLSS 60
          MIQLLFLVLFAEG+VA LLLVKIG LRE VIKSLDQLKMGKGPATVKTIA+TMSVILLSS
Sbjct: 1  MIQLLFLVLFAEGIVALLLLVKIGPLRELVIKSLDQLKMGKGPATVKTIASTMSVILLSS 60

Query: 61 LMNIVKIQNKGAKLGTMSPMDQVLWRTQLLEASLI 96
          LM+I+KIQNKGAKLGTMSPMDQVLWRT LLEASLI
Sbjct: 61 LMSIIKIQNKGAKLGTMSPMDQVLWRTHLLEASLI 95

[Close]

BLAST of Cla002712 vs. NCBI nr
Match: gi|1000961647|ref|XP_015576001.1| (PREDICTED: B-cell receptor-associated protein 31 [Ricinus communis])

HSP 1 Score: 164.9 bits (416), Expect = 7.8e-38
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 1


Query: 1  MIQLLFLVLFAEGVVAFLLLVKIGLLREFVIKSLDQLKMGKGPATVKTIAATMSVILLSS 60
          MIQLLFLVLFAEG+VA LLLVKIG LRE VIKSLDQLKMGKGPATVKTIA+TMSVILLSS
Sbjct: 1  MIQLLFLVLFAEGIVALLLLVKIGPLRELVIKSLDQLKMGKGPATVKTIASTMSVILLSS 60

Query: 61 LMNIVKIQNKGAKLGTMSPMDQVLWRTQLLEASLI 96
          LM+I+KIQNKGAKLGTMSPMDQVLWRT LLEASLI
Sbjct: 61 LMSIIKIQNKGAKLGTMSPMDQVLWRTHLLEASLI 95

[Close]

BLAST of Cla002712 vs. NCBI nr
Match: gi|802716640|ref|XP_012085075.1| (PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas])

HSP 1 Score: 164.5 bits (415), Expect = 1.0e-37
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 1


Query: 1  MIQLLFLVLFAEGVVAFLLLVKIGLLREFVIKSLDQLKMGKGPATVKTIAATMSVILLSS 60
          MIQLLFLVLFAEGVVAFLLLVKIG LRE V+KSLDQ+KMGKGPATVKTIA TMSVILLSS
Sbjct: 1  MIQLLFLVLFAEGVVAFLLLVKIGPLRELVLKSLDQVKMGKGPATVKTIAGTMSVILLSS 60

Query: 61 LMNIVKIQNKGAKLGTMSPMDQVLWRTQLLEASLI 96
          LM+IVKIQNKGAKLGTMSPMDQVLWRT LLEASL+
Sbjct: 61 LMSIVKIQNKGAKLGTMSPMDQVLWRTHLLEASLM 95

The following BLAST results are available for this feature:

BLAST of Cla002712 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE44_CUCSA	3.1e-41	98.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G629240 PE=4 SV=1	[more]
B9S4Z8_RICCO	5.4e-38	91.58	Bcr-associated protein, bap, putative OS=Ricinus communis GN=RCOM_1719170 PE=4 S...	[more]
A0A067JU89_JATCU	7.1e-38	91.58	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17521 PE=4 SV=1	[more]
A0A151RRL7_CAJCA	7.1e-38	90.53	Uncharacterized protein OS=Cajanus cajan GN=KK1_033263 PE=4 SV=1	[more]
A0A0D2PVS1_GOSRA	9.2e-38	91.58	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G232500 PE=4 SV=1	[more]

BLAST of Cla002712 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120825\|ref\|XP_008460368.1\|	8.9e-42	100.00	PREDICTED: B-cell receptor-associated protein 31-like [Cucumis melo]	[more]
gi\|449453280\|ref\|XP_004144386.1\|	4.4e-41	98.95	PREDICTED: uncharacterized protein LOC101213598 [Cucumis sativus]	[more]
gi\|223539636\|gb\|EEF41218.1\|	7.8e-38	91.58	bcr-associated protein, bap, putative [Ricinus communis]	[more]
gi\|1000961647\|ref\|XP_015576001.1\|	7.8e-38	91.58	PREDICTED: B-cell receptor-associated protein 31 [Ricinus communis]	[more]
gi\|802716640\|ref\|XP_012085075.1\|	1.0e-37	91.58	PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008417	BAP29/BAP31

Vocabulary: **Cellular Component**
Term	Definition
GO:0005783	endoplasmic reticulum
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0070973	protein localization to endoplasmic reticulum exit site
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005887	integral component of plasma membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU42884	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002712	Cla002712.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU42884	WMU42884	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008417	B-cell receptor-associated protein 29/31	PANTHER	PTHR12701	BCR-ASSOCIATED PROTEIN, BAP	coord: 1..95 score: 4.5
None	No IPR available	PANTHER	PTHR12701:SF13	B-CELL RECEPTOR-ASSOCIATED PROTEIN 31-LIKE PROTEIN	coord: 1..95 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002712	Cla97C07G130310	Watermelon (97103) v2	wmwmbB176
Cla002712	Csa3G629240	Cucumber (Chinese Long) v2	cuwmB227
Cla002712	MELO3C022712	Melon (DHL92) v3.5.1	mewmB364
Cla002712	ClCG07G002030	Watermelon (Charleston Gray)	wcgwmB374
Cla002712	CSPI03G27590	Wild cucumber (PI 183967)	cpiwmB225
Cla002712	Cucsa.150190	Cucumber (Gy14) v1	cgywmB266
Cla002712	CmaCh02G016760	Cucurbita maxima (Rimu)	cmawmB559
Cla002712	CmoCh02G017200	Cucurbita moschata (Rifu)	cmowmB552
Cla002712	Lsi05G011240	Bottle gourd (USVL1VR-Ls)	lsiwmB357
Cla002712	Cp4.1LG05g00490	Cucurbita pepo (Zucchini)	cpewmB701
Cla002712	CsGy3G025640	Cucumber (Gy14) v2	cgybwmB212
Cla002712	MELO3C022712.2	Melon (DHL92) v3.6.1	medwmB362
Cla002712	Carg08898	Silver-seed gourd	carwmB0779
Cla002712	CsaV3_3G029990	Cucumber (Chinese Long) v3	cucwmB234
Cla002712	Bhi05G000051	Wax gourd	wgowmB266

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002712	Watermelon (97103) v1	wmwmB100
Cla002712	Cucumber (Gy14) v1	cgywmB084
Cla002712	Cucumber (Gy14) v1	cgywmB476
Cla002712	Cucurbita maxima (Rimu)	cmawmB492
Cla002712	Cucurbita moschata (Rifu)	cmowmB486
Cla002712	Cucurbita moschata (Rifu)	cmowmB791
Cla002712	Melon (DHL92) v3.5.1	mewmB460
Cla002712	Watermelon (Charleston Gray)	wcgwmB026
Cla002712	Cucumber (Chinese Long) v2	cuwmB223
Cla002712	Watermelon (Charleston Gray)	wcgwmB282
Cla002712	Cucumber (Chinese Long) v2	cuwmB587
Cla002712	Cucurbita pepo (Zucchini)	cpewmB258
Cla002712	Cucurbita pepo (Zucchini)	cpewmB843
Cla002712	Bottle gourd (USVL1VR-Ls)	lsiwmB194
Cla002712	Bottle gourd (USVL1VR-Ls)	lsiwmB360
Cla002712	Cucumber (Gy14) v2	cgybwmB209
Cla002712	Cucumber (Gy14) v2	cgybwmB549
Cla002712	Melon (DHL92) v3.6.1	medwmB445
Cla002712	Silver-seed gourd	carwmB0285
Cla002712	Watermelon (97103) v2	wmwmbB162