Cla002707 (gene) Watermelon (97103) v1

Overview
NameCla002707
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCCR4-NOT transcription complex subunit 8 (AHRD V1 ***- B4FDJ4_MAIZE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold
LocationChr7 : 248663 .. 249718 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGTCCGAAGGGGAAATCGCCAAAAAGAAATTTCCAGAGACGAAATAATCCGGCCACCGGAGAAGCGCCGATCAGTCCAACCCATTGGAAACGAGAGGTTTGGTCTGAGAATTTCCGGGAAGAAATAGAGCTTTTGAAACAATATCTTCCGAAGTTTCCCATCGTCGCCATTGATACAGAGTTTCCAGGTATAATTATGAGCATATTGATGGAATGGAATTTGCTGTATTTTAGGGTTCAGGTTTGATTTTACCGTTAGAGATGAGTGGAATTGTTTCTAGGTTTTCTCCGATATACTCCGAAAGGCGTTACGGAGGAAGAATTTTACGATTGCCTTCAATTTAATGTGAACCGATTGAGCATACTTCAATTGGGTCTCACACTCTGCGATGAGAAGGGAAACATAGGAATGACTTGGGAGTTTAATTTCAGAGACTTCGATCAGATTTCCGATATGGAAGGGGTTTCTTCGCTTGATTCGTTTTTGAAGAACAAGGGGTTTGATTTTGAGAAATTGAGAAGCCATGGAATTGCGCCACAGGAATTTGGTAGGCTGTTCAAACCCATTCTTCGGAGTGGTGGAATCCAAAGATGGATTACCTTCCATGGATCTTACGACATTGCTTATCTTATGAAGCTTGTGGAGATTAGATTCATGCCTGCTTCCATGGCTGCCTTTGCTATCACTGCTCAGCGTTTGTTTGGTACGGTCACCGATCTCAAACACATGGCTCGATACTGCAACGGCTTGCTCGACGGCAATTTAGGCCTTAAAAAACTGGCTAAATTGCTCGATGTTAACCGAATCGGTACTGCCCATTTTGGTGGTTCGGATAGTTTGCTCACGGCCTCTGTTTATGCCAAGATGAAGACCATGTTCAAGCTCCCCGAACACCTCTCTGAAGGCTTTTTATACGGATTGCCTCACCCGATTCGAGCTCTCCGACAACCCATCACTATCGGCGATCCATCTCCGCCGTCCAGATGCTTGGTGTCGTCTTTCAGCCAATCGCCATTGGTGTTCGTCGGCGATTTCCTTATTATTGGTTGA

mRNA sequence

ATGAAGAGTCCGAAGGGGAAATCGCCAAAAAGAAATTTCCAGAGACGAAATAATCCGGCCACCGGAGAAGCGCCGATCAGTCCAACCCATTGGAAACGAGAGGTTTGGTCTGAGAATTTCCGGGAAGAAATAGAGCTTTTGAAACAATATCTTCCGAAGTTTCCCATCGTCGCCATTGATACAGAGTTTCCAGGTTTTCTCCGATATACTCCGAAAGGCGTTACGGAGGAAGAATTTTACGATTGCCTTCAATTTAATGTGAACCGATTGAGCATACTTCAATTGGGTCTCACACTCTGCGATGAGAAGGGAAACATAGGAATGACTTGGGAGTTTAATTTCAGAGACTTCGATCAGATTTCCGATATGGAAGGGGTTTCTTCGCTTGATTCGTTTTTGAAGAACAAGGGGTTTGATTTTGAGAAATTGAGAAGCCATGGAATTGCGCCACAGGAATTTGGTAGGCTGTTCAAACCCATTCTTCGGAGTGGTGGAATCCAAAGATGGATTACCTTCCATGGATCTTACGACATTGCTTATCTTATGAAGCTTGTGGAGATTAGATTCATGCCTGCTTCCATGGCTGCCTTTGCTATCACTGCTCAGCGTTTGTTTGGTACGGTCACCGATCTCAAACACATGGCTCGATACTGCAACGGCTTGCTCGACGGCAATTTAGGCCTTAAAAAACTGGCTAAATTGCTCGATGTTAACCGAATCGGTACTGCCCATTTTGGTGGTTCGGATAGTTTGCTCACGGCCTCTGTTTATGCCAAGATGAAGACCATGTTCAAGCTCCCCGAACACCTCTCTGAAGGCTTTTTATACGGATTGCCTCACCCGATTCGAGCTCTCCGACAACCCATCACTATCGGCGATCCATCTCCGCCGTCCAGATGCTTGGTGTCGTCTTTCAGCCAATCGCCATTGGTGTTCGTCGGCGATTTCCTTATTATTGGTTGA

Coding sequence (CDS)

ATGAAGAGTCCGAAGGGGAAATCGCCAAAAAGAAATTTCCAGAGACGAAATAATCCGGCCACCGGAGAAGCGCCGATCAGTCCAACCCATTGGAAACGAGAGGTTTGGTCTGAGAATTTCCGGGAAGAAATAGAGCTTTTGAAACAATATCTTCCGAAGTTTCCCATCGTCGCCATTGATACAGAGTTTCCAGGTTTTCTCCGATATACTCCGAAAGGCGTTACGGAGGAAGAATTTTACGATTGCCTTCAATTTAATGTGAACCGATTGAGCATACTTCAATTGGGTCTCACACTCTGCGATGAGAAGGGAAACATAGGAATGACTTGGGAGTTTAATTTCAGAGACTTCGATCAGATTTCCGATATGGAAGGGGTTTCTTCGCTTGATTCGTTTTTGAAGAACAAGGGGTTTGATTTTGAGAAATTGAGAAGCCATGGAATTGCGCCACAGGAATTTGGTAGGCTGTTCAAACCCATTCTTCGGAGTGGTGGAATCCAAAGATGGATTACCTTCCATGGATCTTACGACATTGCTTATCTTATGAAGCTTGTGGAGATTAGATTCATGCCTGCTTCCATGGCTGCCTTTGCTATCACTGCTCAGCGTTTGTTTGGTACGGTCACCGATCTCAAACACATGGCTCGATACTGCAACGGCTTGCTCGACGGCAATTTAGGCCTTAAAAAACTGGCTAAATTGCTCGATGTTAACCGAATCGGTACTGCCCATTTTGGTGGTTCGGATAGTTTGCTCACGGCCTCTGTTTATGCCAAGATGAAGACCATGTTCAAGCTCCCCGAACACCTCTCTGAAGGCTTTTTATACGGATTGCCTCACCCGATTCGAGCTCTCCGACAACCCATCACTATCGGCGATCCATCTCCGCCGTCCAGATGCTTGGTGTCGTCTTTCAGCCAATCGCCATTGGTGTTCGTCGGCGATTTCCTTATTATTGGTTGA

Protein sequence

MKSPKGKSPKRNFQRRNNPATGEAPISPTHWKREVWSENFREEIELLKQYLPKFPIVAIDTEFPGFLRYTPKGVTEEEFYDCLQFNVNRLSILQLGLTLCDEKGNIGMTWEFNFRDFDQISDMEGVSSLDSFLKNKGFDFEKLRSHGIAPQEFGRLFKPILRSGGIQRWITFHGSYDIAYLMKLVEIRFMPASMAAFAITAQRLFGTVTDLKHMARYCNGLLDGNLGLKKLAKLLDVNRIGTAHFGGSDSLLTASVYAKMKTMFKLPEHLSEGFLYGLPHPIRALRQPITIGDPSPPSRCLVSSFSQSPLVFVGDFLIIG
Homology
[Close]
BLAST of Cla002707 vs. Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.3e-43
Identity = 105/269 (39.03%), Postives = 149/269 (55.39%), Query Frame = 1 

Query: 33  REVWSENFREEIELLKQYLPKFPIVAIDTEFPGFLRYT--------PKGVTEEEFYDCLQ 92
           REVW+ N  +E+ L++Q +  FP VA+DTEFPG +  T        P  +  E  YD L+
Sbjct: 17  REVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTLK 76

Query: 93  FNVNRLSILQLGLTLCDEKGNI-------GMTWEFNFRDFDQISDMEGVSSLDSFLKNKG 152
            NVN L ++QLGLTL DEKGN+          W+FNFR+F+ ISDM  + S++  L+   
Sbjct: 77  ANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIE-LLRKSA 136

Query: 153 FDFEKLRSHGIAPQEFGRLFKPILRSGGIQ----RWITFHGSYDIAYLMKLVEIRFMPAS 212
            D EK    G+  + F  L   ++ SG +      W+TFH  YD  YL+KL+  + +P  
Sbjct: 137 IDLEKNNECGVDAKRFAEL---LMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEE 196

Query: 213 MAAFAITAQRLFGTVTDLKHMARYCNGLLDGNLGLKKLAKLLDVNRIGTAHFGGSDSLLT 272
           ++ F    ++ F  V D+K++  +C  L     GL+K+A+LL V R+G +H  GSDSLLT
Sbjct: 197 ISDFFDQMEKFFPVVYDIKYLMGFCTNLYG---GLEKIAELLGVKRVGISHQAGSDSLLT 256

Query: 273 ASVYAKMKTMFKLPEHLS-EGFLYGLPHP 282
              + KMK  F     L   GFL+GL +P
Sbjct: 257 LRTFIKMKEFFFTGSLLKYSGFLFGLDNP 278

[Close]
BLAST of Cla002707 vs. Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.7e-43
Identity = 107/262 (40.84%), Postives = 147/262 (56.11%), Query Frame = 1 

Query: 33  REVWSENFREEIELLKQYLPKFPIVAIDTEFPGFLRYTPKGV---TEEEFYDCLQFNVNR 92
           REVW++N +EE++L++  +  FP VA+DTEFPG +   P G      +  Y+ L+ NVN 
Sbjct: 13  REVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV-VRPVGTFKSNADYHYETLKTNVNI 72

Query: 93  LSILQLGLTLCDEKGNIG-------MTWEFNFRDFDQISDMEGVSSLDSFLKNKGFDFEK 152
           L ++QLGLT  +E+GN+          W+FNFR+FD  SD+  + S++  LK  G D  K
Sbjct: 73  LKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIE-LLKQSGIDLAK 132

Query: 153 LRSHGIAPQEFGRLFKPILRSGGI-----QRWITFHGSYDIAYLMKLVEIRFMPASMAAF 212
               GI  + F  L    L S GI       W+TFH  YD  YL+KL+  + +P S   F
Sbjct: 133 NTLDGIDSKRFAEL----LMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDF 192

Query: 213 AITAQRLFGTVTDLKHMARYCNGLLDGNLGLKKLAKLLDVNRIGTAHFGGSDSLLTASVY 272
                  F TV D+KH+ ++CN L   + GL KLA+LL+V R+G  H  GSDSLLT+  +
Sbjct: 193 FKLINVYFPTVYDIKHLMKFCNSL---HGGLNKLAELLEVERVGICHQAGSDSLLTSCTF 252

Query: 273 AKMKTMFKL-PEHLSEGFLYGL 279
            K+K  F + P H   G LYGL
Sbjct: 253 RKLKENFFVGPLHKYSGVLYGL 265

[Close]
BLAST of Cla002707 vs. Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 174.1 bits (440), Expect = 2.5e-42
Identity = 105/263 (39.92%), Postives = 144/263 (54.75%), Query Frame = 1 

Query: 33  REVWSENFREEIELLKQYLPKFPIVAIDTEFPGFLRYTPKGVTE---EEFYDCLQFNVNR 92
           REVW++N   E+ L+++ +  FP VA+DTEFPG +   P G  +   E  Y+ L+ NVN 
Sbjct: 13  REVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV-CRPVGTFKTNTEYHYETLKTNVNI 72

Query: 93  LSILQLGLTLCDEKGNIGMT--------WEFNFRDFDQISDMEGVSSLDSFLKNKGFDFE 152
           L ++QLGLT  DEKGN+           W+FNFR+FD  SD+    S++  L+  G DF 
Sbjct: 73  LKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE-LLRQSGIDFV 132

Query: 153 KLRSHGIAPQEFGRLFKPILRSGGIQ-----RWITFHGSYDIAYLMKLVEIRFMPASMAA 212
           K    GI  + F  L    L S GI       W+TFH  YD  YL+KL+  + +P +   
Sbjct: 133 KNNEFGIDSKRFAEL----LMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTG 192

Query: 213 FAITAQRLFGTVTDLKHMARYCNGLLDGNLGLKKLAKLLDVNRIGTAHFGGSDSLLTASV 272
           F       F  V D+KH+ ++CN L   + GL KLA+LLDV R+G  H  GSDSLLT+  
Sbjct: 193 FFEMISVYFPRVYDIKHLMKFCNSL---HGGLNKLAELLDVERVGICHQAGSDSLLTSCT 252

Query: 273 YAKMKTMFKLPE-HLSEGFLYGL 279
           + K++  F +       G LYGL
Sbjct: 253 FRKLQENFFIGSMEKYSGVLYGL 266

[Close]
BLAST of Cla002707 vs. Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.2e-42
Identity = 99/273 (36.26%), Postives = 150/273 (54.95%), Query Frame = 1 

Query: 33  REVWSENFREEIELLKQYLPKFPIVAIDTEFPGFLRYTPKGVTEEEFYDCLQFNVNRLSI 92
           R VW  N  EE+  + + L +FP++A DTE+PG +  T    + +E Y  ++ NV    +
Sbjct: 10  RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVENTKL 69

Query: 93  LQLGLTLCDEKGNIGMTWEFNFRDFDQISDMEGVSSLDSFLKNKGFDFEKLRSHGIAPQE 152
           +Q G TL + KG IG  WE NF +F   SD     S++ FL+  G D +K+R  G+    
Sbjct: 70  IQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIE-FLRRHGLDLQKIRDEGV--DM 129

Query: 153 FGRLFKP----ILRSGGIQRWITFHGSYDIAYLMKLVEIRFMPASMAAFAITAQRLFGTV 212
           FG  F P    + RS     ++TF G+YD AY + ++    +P +   FA    ++FG V
Sbjct: 130 FGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQV 189

Query: 213 TDLKHMARYCNGLLDGNLGLKKLAKLLDVNRIGTAHFGGSDSLLTASVYAKMKTMFKLPE 272
            D K MA +C GL + +LGL KLA+LL + R+G AH  GSDSL+TA V+ K+K +++   
Sbjct: 190 YDTKVMAGFCEGLGE-HLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYE-DS 249

Query: 273 HLSEGFLYGL-PHPIRALRQPITIGDPSPPSRC 301
             + G +YG+    + A   P  + +P+ P  C
Sbjct: 250 RFARGLIYGIGKSNLVAAPAPAPVPEPTLPLMC 277

[Close]
BLAST of Cla002707 vs. Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.0e-40
Identity = 101/268 (37.69%), Postives = 149/268 (55.60%), Query Frame = 1 

Query: 33  REVWSENFREEIELLKQYLPKFPIVAIDTEFPGF-----LRYTPKGVTEEEFYDCLQFNV 92
           REVW+EN   E EL+ + +  +P +++DTEFPG      LR+T      ++ Y  L+ NV
Sbjct: 20  REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFT----NPDDLYTLLKANV 79

Query: 93  NRLSILQLGLTLCDEKGNI---------GMTWEFNFRDFDQISDMEGVSSLDSFLKNKGF 152
           + LS++Q+GLTL D  GN+         G  WEFNFRDFD   D     S++  L+ +G 
Sbjct: 80  DALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIE-LLRRQGI 139

Query: 153 DFEKLRSHGIAPQEFGRLFKPILRSGGI----QRWITFHGSYDIAYLMKLVEIRFMPASM 212
           DFE+    G+  + F  L   ++ SG +      W+TFH +YD  YLMK++  R +P ++
Sbjct: 140 DFERNCRDGVESERFAEL---MMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGAL 199

Query: 213 AAFAITAQRLFG-TVTDLKHMARYCNGLLDGNLGLKKLAKLLDVNR-IGTAHFGGSDSLL 272
             F    + LFG  V D+KHM ++C   L G  GL ++A+ L+VNR +G  H  GSDSLL
Sbjct: 200 GEFKRVMRVLFGERVYDVKHMMKFCERRLFG--GLDRVARTLEVNRAVGKCHQAGSDSLL 259

Query: 273 TASVYAKMKTMFKLPE--HLSEGFLYGL 279
           T   + +M+ ++ + +      G LYGL
Sbjct: 260 TWHAFQRMRDLYFVQDGPEKHAGVLYGL 277

[Close]
BLAST of Cla002707 vs. TrEMBL
Match: A0A0A0KTU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011090 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 4.5e-67
Identity = 133/254 (52.36%), Postives = 169/254 (66.54%), Query Frame = 1 

Query: 33  REVWSENFREEIELLKQYLPKFPIVAIDTEFPGFLRYTPKGVTEEEFYDCLQFNVNRLSI 92
           R+VW  N  +E+ +L  +L KFP++ +DTEFPGFLR TP+G  +E  Y  L+FNVN L I
Sbjct: 6   RQVWYHNLAQELAILNDHLFKFPVIVMDTEFPGFLRSTPRGAPQEHLYQDLKFNVNHLKI 65

Query: 93  LQLGLTLCDEKGNIGMTWEFNFRDFDQISDMEGVSSLDSFLKNKGFDFEKLRSHGIAPQE 152
           LQLGLTL DE  ++G++W F F DFD+ +D+   +S+     NKGF+F+K R  GI   E
Sbjct: 66  LQLGLTLMDENEHVGLSWVFTFSDFDEQTDLSSPTSMQYLKNNKGFEFKKQRKDGIPSAE 125

Query: 153 FGRLFKPILRSGGIQRWITFHGSYDIAYLMKLVEIRFMPASMAAFAITAQRLFGTVTDLK 212
           F R F PI  S  I +WITFHG YD+AYL+KL+ I+ MP SM  FAI AQR  GTV DLK
Sbjct: 126 FRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMIIKAMPESMVEFAIIAQRFLGTVNDLK 185

Query: 213 HMARYCNGLLDGNLGLKKLAKLLDVNRIGTAHFGGSDSLLTASVYAKMKTMFKLPEHLSE 272
           +M  +C  L+ G LGLK+LA+LLDVN   T   GGSDSLL A  Y KMK + KL    + 
Sbjct: 186 YMIGHCERLMKGELGLKRLAELLDVN--DTVFSGGSDSLLIALAYVKMKKL-KLSSENTG 245

Query: 273 GFLYGLPHPIRALR 287
           GFLYG  + IR  +
Sbjct: 246 GFLYGFQYRIRGYK 256

[Close]
BLAST of Cla002707 vs. TrEMBL
Match: M5Y7U4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017181mg PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 7.9e-56
Identity = 120/262 (45.80%), Postives = 164/262 (62.60%), Query Frame = 1 

Query: 33  REVWSENFREEIELLKQYLPKFPIVAIDTEFPGFLRYTPKGVTEEEFYDCLQFNVNRLSI 92
           R VW+ NF +E+      L +FP+++ DTEFPGFLR TP+   E++ Y+ ++FNV  L +
Sbjct: 4   RGVWAHNFHQELSQFDHCLHRFPVISFDTEFPGFLRDTPRDALEDQRYEDVKFNVESLKL 63

Query: 93  LQLGLTLCDEKGNIGMTWEFNFRDFDQISDMEGVSSLDSFLKNKGFDFEKLRSHGIAPQE 152
           LQLG TL D  GNIG TWEF+   F++ SD   V+S+ S LK  G DF +L   GI+  E
Sbjct: 64  LQLGFTLSDAHGNIGGTWEFHLSGFNEKSDPHVVASI-SLLKRNGLDFARLGQFGISVAE 123

Query: 153 FGRLFKPILR-SGGIQ--RWITFHGSYDIAYLMKLVEIRFMPASMAAFAITAQRLFGTVT 212
           F   F  +LR   G+    W+ FHG YD+AYL+KL+  + +P S+  FA     +FGT+ 
Sbjct: 124 FVFGFLRVLRIHRGLHDLTWVCFHGLYDLAYLLKLLTQKPLPDSVVMFAKALGVVFGTIY 183

Query: 213 DLKHMARYCNGLLDGNLGLKKLAKLLDVNRIGTAHFGGSDSLLTASVYAKMKTMFKLPEH 272
           D+K MARYC G   G +GL ++AKLLDV R G AH  GSDSLLTA+V++KM   F+    
Sbjct: 184 DVKFMARYCRGFFGGEIGLARVAKLLDVERSGEAHQAGSDSLLTAAVFSKMNATFRSVAG 243

Query: 273 LSEGFLYGLPHPIRALRQPITI 292
           +S+G LYG+   I    QP  +
Sbjct: 244 MSQGCLYGISPTIVRYWQPAPV 264

[Close]
BLAST of Cla002707 vs. TrEMBL
Match: M5XIY4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023187mg PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 7.9e-56
Identity = 120/262 (45.80%), Postives = 164/262 (62.60%), Query Frame = 1 

Query: 33  REVWSENFREEIELLKQYLPKFPIVAIDTEFPGFLRYTPKGVTEEEFYDCLQFNVNRLSI 92
           R VW+ NF +E+      L +FP+++ DTEFPGFLR TP+   E++ Y+ ++FNV  L +
Sbjct: 4   RGVWAHNFHQELSQFDHCLHRFPVISFDTEFPGFLRDTPRDALEDQRYEDVKFNVESLKL 63

Query: 93  LQLGLTLCDEKGNIGMTWEFNFRDFDQISDMEGVSSLDSFLKNKGFDFEKLRSHGIAPQE 152
           LQLG TL D  GNIG TWEF+   F++ SD   V+S+ S LK  G DF +L   GI+  E
Sbjct: 64  LQLGFTLSDAHGNIGGTWEFHLSGFNEKSDPHVVASI-SLLKRNGLDFARLGQFGISVAE 123

Query: 153 FGRLFKPILR-SGGIQ--RWITFHGSYDIAYLMKLVEIRFMPASMAAFAITAQRLFGTVT 212
           F   F  +LR   G+    W+ FHG YD+AYL+KL+  + +P S+  FA     +FGT+ 
Sbjct: 124 FVFGFLRVLRIHRGLHDLTWVCFHGLYDLAYLLKLLTQKPLPDSVVMFAKALGVVFGTIY 183

Query: 213 DLKHMARYCNGLLDGNLGLKKLAKLLDVNRIGTAHFGGSDSLLTASVYAKMKTMFKLPEH 272
           D+K MARYC G   G +GL ++AKLLDV R G AH  GSDSLLTA+V++KM   F+    
Sbjct: 184 DVKFMARYCRGFFGGEIGLARVAKLLDVERSGEAHQAGSDSLLTAAVFSKMNATFRSVAG 243

Query: 273 LSEGFLYGLPHPIRALRQPITI 292
           +S+G LYG+   I    QP  +
Sbjct: 244 MSQGCLYGISPTIVRYWQPAPV 264

[Close]
BLAST of Cla002707 vs. TrEMBL
Match: V4S8J5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013857mg PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.6e-54
Identity = 115/248 (46.37%), Postives = 157/248 (63.31%), Query Frame = 1 

Query: 35  VWSENFREEIELLKQYLPKFPIVAIDTEFPGFLRYTPKGVTEEEFYDCLQFNVNRLSILQ 94
           VW ENF++E     + L +F I++IDTEFPGF+  TP+       Y+ L+FNV+   I+Q
Sbjct: 6   VWRENFQQESVQFDKSLHRFNILSIDTEFPGFICSTPRDAPTSVVYNNLKFNVDNTKIIQ 65

Query: 95  LGLTLCDEKGNIGMTWEFNFRDFDQISDMEGVSSLDSFLKNKGFDFEKLRSHGIAPQEFG 154
           LG+TL D+KGNIG TWEFNF DFD   D     S+   +++ G DF K+R  GI    F 
Sbjct: 66  LGITLSDDKGNIGSTWEFNFSDFDFQKDPYVEESM-RLMRSNGLDFAKIRRDGIPQCVFV 125

Query: 155 RLFKPILRSGGIQRWITFHGSYDIAYLMKLVEIRFMPASMAAFAITAQRLFGTVTDLKHM 214
                IL      +W+TFHG YD+A++ KL     +P S  AFA+ A + F +V D+K +
Sbjct: 126 PRLLEILSKHKNLKWVTFHGLYDLAHITKLFINHPLPQSARAFAVGATKYFESVLDVKVV 185

Query: 215 ARYCNGLLDGNLGLKKLAKLLDVNRIGTAHFGGSDSLLTASVYAKMKTMFKLPEHLSEGF 274
           A+YC+GL+ GNLGL KLAK+L V R+G AH  GSDS +TA+V+AKMK  F+  E + +G 
Sbjct: 186 AKYCDGLMGGNLGLSKLAKILGVERLGEAHNAGSDSFVTAAVFAKMKEKFEFEEKVFDGI 245

Query: 275 LYGLPHPI 283
           LYG+   I
Sbjct: 246 LYGMDERI 252

[Close]
BLAST of Cla002707 vs. TrEMBL
Match: M5XNP9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025149mg PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.7e-53
Identity = 115/249 (46.18%), Postives = 156/249 (62.65%), Query Frame = 1 

Query: 33  REVWSENFREEIELLKQYLPKFPIVAIDTEFPGFLRYTPKGVTEEEFYDCLQFNVNRLSI 92
           R VW+ NF +E+      L +FP+++ DTEFPGFLR TP+   E+  Y+ ++FNV  L +
Sbjct: 4   RGVWAHNFHQELSQFDHCLHRFPVISFDTEFPGFLRDTPRDALEDHRYEDVKFNVESLKL 63

Query: 93  LQLGLTLCDEKGNIGMTWEFNFRDFDQISDMEGVSSLDSFLKNKGFDFEKLRSHGIAPQE 152
           LQLG TL D  GNIG TWEF+   F++ SD   V+S+ S LK  G DF +L   GI+  E
Sbjct: 64  LQLGFTLSDAHGNIGGTWEFHLSGFNEKSDPHVVASI-SLLKRNGLDFARLGQFGISVAE 123

Query: 153 FGRLFKPILR-SGGIQ--RWITFHGSYDIAYLMKLVEIRFMPASMAAFAITAQRLFGTVT 212
           F   F  +LR   G+    W+ FHG YD+AYL+K +  + +P S+  FA     +FG + 
Sbjct: 124 FVFGFLRVLRIHRGLHDLTWVCFHGLYDLAYLLKFLTQKPLPNSVVMFAKALGVVFGIIY 183

Query: 213 DLKHMARYCNGLLDGNLGLKKLAKLLDVNRIGTAHFGGSDSLLTASVYAKMKTMFKLPEH 272
           D+K MARYC G   G +GL ++AKLLDV R G AH  GSDSLLTA V++KM   F+    
Sbjct: 184 DVKFMARYCKGFFGGEIGLARVAKLLDVERSGEAHQAGSDSLLTAVVFSKMNATFRSVAG 243

Query: 273 LSEGFLYGL 279
           +S+G LYG+
Sbjct: 244 MSQGCLYGI 251

[Close]
BLAST of Cla002707 vs. NCBI nr
Match: gi|659108981|ref|XP_008454486.1| (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo])

HSP 1 Score: 272.7 bits (696), Expect = 8.1e-70
Identity = 138/254 (54.33%), Postives = 171/254 (67.32%), Query Frame = 1 

Query: 33  REVWSENFREEIELLKQYLPKFPIVAIDTEFPGFLRYTPKGVTEEEFYDCLQFNVNRLSI 92
           R+VW  NF +E+ +L   L KFP++A+DTEFPGFLR TP+G  EE FY  L+FN+N L I
Sbjct: 5   RKVWYHNFIQELAILNDQLFKFPVIAMDTEFPGFLRSTPRGAPEEHFYQDLKFNLNHLKI 64

Query: 93  LQLGLTLCDEKGNIGMTWEFNFRDFDQISDMEGVSSLDSFLKNKGFDFEKLRSHGIAPQE 152
           LQLGLTL DE  ++G++W F F DFD+ +D    +S+      KGF+F+K R  GI   E
Sbjct: 65  LQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGIPSAE 124

Query: 153 FGRLFKPILRSGGIQRWITFHGSYDIAYLMKLVEIRFMPASMAAFAITAQRLFGTVTDLK 212
           F R F PI  S  I +WITFHG YD+AYL+KL+ IR MP SM  FAI AQR  GTV DLK
Sbjct: 125 FRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTVNDLK 184

Query: 213 HMARYCNGLLDGNLGLKKLAKLLDVNRIGTAHFGGSDSLLTASVYAKMKTMFKLPEHLSE 272
           HM R C  L++G LGLK+LA+LL+VN   T   GGSDSLL A  YAKMK   K    +++
Sbjct: 185 HMIRNCEYLMNGELGLKRLAELLNVN--DTIFNGGSDSLLIALAYAKMKKTLKFSSEITD 244

Query: 273 GFLYGLPHPIRALR 287
           GFLYG  + IR  R
Sbjct: 245 GFLYGFYYRIRGYR 256

[Close]
BLAST of Cla002707 vs. NCBI nr
Match: gi|449467363|ref|XP_004151393.1| (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis sativus])

HSP 1 Score: 263.1 bits (671), Expect = 6.4e-67
Identity = 133/254 (52.36%), Postives = 169/254 (66.54%), Query Frame = 1 

Query: 33  REVWSENFREEIELLKQYLPKFPIVAIDTEFPGFLRYTPKGVTEEEFYDCLQFNVNRLSI 92
           R+VW  N  +E+ +L  +L KFP++ +DTEFPGFLR TP+G  +E  Y  L+FNVN L I
Sbjct: 6   RQVWYHNLAQELAILNDHLFKFPVIVMDTEFPGFLRSTPRGAPQEHLYQDLKFNVNHLKI 65

Query: 93  LQLGLTLCDEKGNIGMTWEFNFRDFDQISDMEGVSSLDSFLKNKGFDFEKLRSHGIAPQE 152
           LQLGLTL DE  ++G++W F F DFD+ +D+   +S+     NKGF+F+K R  GI   E
Sbjct: 66  LQLGLTLMDENEHVGLSWVFTFSDFDEQTDLSSPTSMQYLKNNKGFEFKKQRKDGIPSAE 125

Query: 153 FGRLFKPILRSGGIQRWITFHGSYDIAYLMKLVEIRFMPASMAAFAITAQRLFGTVTDLK 212
           F R F PI  S  I +WITFHG YD+AYL+KL+ I+ MP SM  FAI AQR  GTV DLK
Sbjct: 126 FRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMIIKAMPESMVEFAIIAQRFLGTVNDLK 185

Query: 213 HMARYCNGLLDGNLGLKKLAKLLDVNRIGTAHFGGSDSLLTASVYAKMKTMFKLPEHLSE 272
           +M  +C  L+ G LGLK+LA+LLDVN   T   GGSDSLL A  Y KMK + KL    + 
Sbjct: 186 YMIGHCERLMKGELGLKRLAELLDVN--DTVFSGGSDSLLIALAYVKMKKL-KLSSENTG 245

Query: 273 GFLYGLPHPIRALR 287
           GFLYG  + IR  +
Sbjct: 246 GFLYGFQYRIRGYK 256

[Close]
BLAST of Cla002707 vs. NCBI nr
Match: gi|659133291|ref|XP_008466654.1| (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo])

HSP 1 Score: 236.1 bits (601), Expect = 8.4e-59
Identity = 121/233 (51.93%), Postives = 152/233 (65.24%), Query Frame = 1 

Query: 33  REVWSENFREEIELLKQYLPKFPIVAIDTEFPGFLRYTPKGVTEEEFYDCLQFNVNRLSI 92
           R+VW  N  +E+ +L   L K P++ +DTEF GFLR TP+G  EE  Y  L+FN+N L I
Sbjct: 5   RQVWYHNLTQELAILNDQLFKLPMIVMDTEFLGFLRSTPRGAPEEHLYQDLKFNLNHLKI 64

Query: 93  LQLGLTLCDEKGNIGMTWEFNFRDFDQISDMEGVSSLDSFLKNKGFDFEKLRSHGIAPQE 152
           LQLGLTL D+  ++G++W F F DFD+ +D    +S+     NK F+F+K R + I   E
Sbjct: 65  LQLGLTLMDKNEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNNKWFEFKKHRKYRIPSAE 124

Query: 153 FGRLFKPILRSGGIQRWITFHGSYDIAYLMKLVEIRFMPASMAAFAITAQRLFGTVTDLK 212
           F R F PI  S  I +WITFHG YD+AYL+KL+ IR MP SM  FA  AQR  GTV DLK
Sbjct: 125 FRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFATIAQRQLGTVNDLK 184

Query: 213 HMARYCNGLLDGNLGLKKLAKLLDVNRIGTAHFGGSDSLLTASVYAKMKTMFK 266
           HM   C  L++G LGLK+LA+LL+VN   T   GGSDSLL A  Y KMK M K
Sbjct: 185 HMICNCEHLMNGELGLKRLAELLNVN--DTIFNGGSDSLLIALAYVKMKKMLK 235

[Close]
BLAST of Cla002707 vs. NCBI nr
Match: gi|657999824|ref|XP_008392346.1| (PREDICTED: putative CCR4-associated factor 1 homolog 8 isoform X1 [Malus domestica])

HSP 1 Score: 230.3 bits (586), Expect = 4.6e-57
Identity = 121/251 (48.21%), Postives = 160/251 (63.75%), Query Frame = 1 

Query: 35  VWSENFREEIELLKQYLPKFPIVAIDTEFPGFLRYTPKGVTEEEFYDCLQFNVNRLSILQ 94
           VW++NF +EI  + ++L  FPIV+ D EFPGFLR TP+  ++   Y  L+FNV+ L ++Q
Sbjct: 8   VWADNFAQEIAAVDRFLTHFPIVSFDAEFPGFLRNTPRSASDALRYQDLRFNVDSLKLIQ 67

Query: 95  LGLTLCDEKGNIGMTWEFNFRDFDQISDMEGVSSLDSFLKNKGFDFEKLRSHGIAPQEFG 154
           LG+TL D+ GNIG TWEFNFR FD+ +D     S+ + LK  G D EK R  GI P+ F 
Sbjct: 68  LGITLFDDLGNIGGTWEFNFRGFDEETDPHVADSI-TLLKANGLDLEKFRKFGIDPEVFE 127

Query: 155 RLFKPILRSG-GIQRWITFHGSYDIAYLMKLVEIRFMPASMAAFAITAQRLFGTVTDLKH 214
             F  +LR   G   W++FHG YD AY+MK +  + MP+S   FA  A  LF  V DLK 
Sbjct: 128 EGFAEVLRMHRGRLLWVSFHGLYDSAYVMKFMTRKAMPSSPTEFAAMAGNLFERVCDLKF 187

Query: 215 MARYCNGLLDGNLGLKKLAKLLDVNRIGTAHFGGSDSLLTASVYAKMKTMFKLPEHLSEG 274
           MA++  GLL G +GL+++AK+L V R G AH  GSDSLLTA  + +M+  F L   + EG
Sbjct: 188 MAKFYQGLLGGEIGLERMAKILRVQRYGDAHQAGSDSLLTADAFVRMRAQFVLKPGMYEG 247

Query: 275 FLYGLPHPIRA 285
           FLYGL   I A
Sbjct: 248 FLYGLSPKICA 257

[Close]
BLAST of Cla002707 vs. NCBI nr
Match: gi|694446748|ref|XP_009349658.1| (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Pyrus x bretschneideri])

HSP 1 Score: 229.2 bits (583), Expect = 1.0e-56
Identity = 121/251 (48.21%), Postives = 160/251 (63.75%), Query Frame = 1 

Query: 35  VWSENFREEIELLKQYLPKFPIVAIDTEFPGFLRYTPKGVTEEEFYDCLQFNVNRLSILQ 94
           VW++NF +EI  + ++L  FPIV+ DTEFPGFLR TP+  ++   Y  L+FNV+ L ++Q
Sbjct: 8   VWADNFAQEIAAVDRFLTHFPIVSFDTEFPGFLRNTPRSASDALRYQDLRFNVDSLKLIQ 67

Query: 95  LGLTLCDEKGNIGMTWEFNFRDFDQISDMEGVSSLDSFLKNKGFDFEKLRSHGIAPQEFG 154
           LG+TL D+ GNIG TWEFNFR FD+ +D     S+ + LK  G D EK    GI P+ F 
Sbjct: 68  LGITLFDDLGNIGGTWEFNFRGFDEETDPHVADSI-TLLKANGLDLEKFGKFGIDPEVFE 127

Query: 155 RLFKPILRSG-GIQRWITFHGSYDIAYLMKLVEIRFMPASMAAFAITAQRLFGTVTDLKH 214
             F  +LR   G   W++FHG YD AY+MKL+  + MP+S   FA  A  LF  V DLK 
Sbjct: 128 EGFAEVLRMHRGRLLWVSFHGLYDSAYVMKLMTRKAMPSSPTEFAAMAGNLFERVCDLKF 187

Query: 215 MARYCNGLLDGNLGLKKLAKLLDVNRIGTAHFGGSDSLLTASVYAKMKTMFKLPEHLSEG 274
           MA++  GLL G +GL+++AK+L V R G AH  GSDS +TA  + KM+  F L   + EG
Sbjct: 188 MAKFYQGLLGGEIGLERMAKILRVQRYGDAHQAGSDSFVTADAFMKMRAQFGLKPGMYEG 247

Query: 275 FLYGLPHPIRA 285
           FLYGL   I A
Sbjct: 248 FLYGLSPKICA 257

The following BLAST results are available for this feature:
BLAST of Cla002707 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CAF1B_ARATH1.3e-4339.03Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE... [more]
CAF1F_ARATH1.7e-4340.84Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE... [more]
CAF1G_ARATH2.5e-4239.92Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE... [more]
CAF1A_ARATH3.2e-4236.26Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE... [more]
CAF1I_ARATH1.0e-4037.69Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE... [more]
BLAST of Cla002707 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTU4_CUCSA4.5e-6752.36Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011090 PE=4 SV=1[more]
M5Y7U4_PRUPE7.9e-5645.80Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017181mg PE=4 SV=1[more]
M5XIY4_PRUPE7.9e-5645.80Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023187mg PE=4 SV=1[more]
V4S8J5_9ROSI2.6e-5446.37Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013857mg PE=4 SV=1[more]
M5XNP9_PRUPE1.7e-5346.18Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025149mg PE=4 S... [more]
BLAST of Cla002707 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659108981|ref|XP_008454486.1|8.1e-7054.33PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo][more]
gi|449467363|ref|XP_004151393.1|6.4e-6752.36PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis sativus][more]
gi|659133291|ref|XP_008466654.1|8.4e-5951.93PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo][more]
gi|657999824|ref|XP_008392346.1|4.6e-5748.21PREDICTED: putative CCR4-associated factor 1 homolog 8 isoform X1 [Malus domesti... [more]
gi|694446748|ref|XP_009349658.1|1.0e-5648.21PREDICTED: putative CCR4-associated factor 1 homolog 8 [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006941RNase_CAF1
IPR012337RNaseH-like_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002707Cla002707.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 35..148
score: 7.1
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 30..268
score: 5.7
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 30..277
score: 1.07
NoneNo IPR availablePANTHERPTHR10797CCR4-NOT TRANSCRIPTION COMPLEX SUBUNITcoord: 33..278
score: 4.9
NoneNo IPR availablePANTHERPTHR10797:SF0POP2, ISOFORM Dcoord: 33..278
score: 4.9