Cla002700 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002700
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	ER lumen protein retaining receptor-like protein (AHRD V1 ***- Q9LSG1_ARATH); contains Interpro domain(s) IPR000133 ER lumen protein retaining receptor
Location	Chr7 : 203574 .. 204529 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAATGCTAAGGTAATTTAGCCTCAAATTCTTTCAATTTTTCATTTCATTCATCAAAAATACTTTAATTTATTGCTTCATTTTCATCATATATTTGTTCTTTTTTGGCAGATGATAGAGCCTTTCACAGCCCATTATGTTTTTGCTTTGGGGATTTCTAGATTCCTCGCTTTTGCTCATTGGGTCATTCAGGTTCGTTCCCATAACGGTTTTATTTTTCATTTTGAATCACATTTTGTTTGTTAAGGACTCTCTTTGGTAACTATTTACCTATTGCTAATTGGTTTAATTTTTTTTTTTTTTAAATTAAGCCTATTAAATACTATTTTCACCTCTAAATTTCTTCGTTTATTATCTACTTTTTATTAGTGCTCTAAAAAATTAAGACAAAATTTGAAAAATAAAAAAAAAATTAAAAACTTATTTTTGTTTTTGAAATTTAGCTAAGAATTCAACTCTTGTACTTGAAAAATAGGAAAATCATAGTAAAAAATTGAGAAAATGTAGGCTTAATTTTCAAAAACTAAAAACAAAAAACGAGATGGTTATCAAAAGTTTCTAAGTATTTCACCTAATTACATTCACTTTTTAGATTATAGGCTATTTACCTAACTTAGTATTTCATCAATAACTTTGAAATTCCATATATAAAAAGTCAAACTATTTACAAATATGGTTTATCGCTTAATAATAGAAGTCTATCTTTAAATTTTTCTATATTTGTAAATATTTTAACTTATTTTGCTATATTTGAAAACAACAAAAATTACTTTTCATAATTTTATGATTTTTTTTATTAATTATATTAAAATTTGTTTTAGGTCTACGAGACTCGAGGAAAATATTTGCTATTGGTTGGCAATGGTTATTTTTGGTTCATGACAGCTTTCCTTGCAGAAATGATTCAATCCTTTATCTTGGCCGACTTTTGTTATTACTATATAAAAAGGTAA

mRNA sequence

ATGCAAAATGCTAAGATGATAGAGCCTTTCACAGCCCATTATGTTTTTGCTTTGGGGATTTCTAGATTCCTCGCTTTTGCTCATTGGGTCATTCAGGTCTACGAGACTCGAGGAAAATATTTGCTATTGGTTGGCAATGGTTATTTTTGGTTCATGACAGCTTTCCTTGCAGAAATGATTCAATCCTTTATCTTGGCCGACTTTTGTTATTACTATATAAAAAGGTAA

Coding sequence (CDS)

ATGCAAAATGCTAAGATGATAGAGCCTTTCACAGCCCATTATGTTTTTGCTTTGGGGATTTCTAGATTCCTCGCTTTTGCTCATTGGGTCATTCAGGTCTACGAGACTCGAGGAAAATATTTGCTATTGGTTGGCAATGGTTATTTTTGGTTCATGACAGCTTTCCTTGCAGAAATGATTCAATCCTTTATCTTGGCCGACTTTTGTTATTACTATATAAAAAGGTAA

Protein sequence

MQNAKMIEPFTAHYVFALGISRFLAFAHWVIQVYETRGKYLLLVGNGYFWFMTAFLAEMIQSFILADFCYYYIKR

Homology

[Close]

BLAST of Cla002700 vs. TrEMBL
Match: A0A0A0L959_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G634300 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.6e-34
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 1   MQNAKMIEPFTAHYVFALGISRFLAFAHWVIQVYETRGKYLLLVGNGYFWFMTAFLAEMI 60
           MQNAKMIEPFTAHYVFALGISRFLAFAHW+IQVYET GKYLLLVGNGYFWFM AFLAEMI
Sbjct: 213 MQNAKMIEPFTAHYVFALGISRFLAFAHWIIQVYETGGKYLLLVGNGYFWFMAAFLAEMI 272

Query: 61  QSFILADFCYYYIK 75
           QSFILADFCYYY+K
Sbjct: 273 QSFILADFCYYYVK 286

[Close]

BLAST of Cla002700 vs. TrEMBL
Match: W9RN69_9ROSA (Putative ER lumen protein retaining receptor OS=Morus notabilis GN=L484_007002 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.7e-30
Identity = 58/74 (78.38%), Postives = 69/74 (93.24%), Query Frame = 1


Query: 1   MQNAKMIEPFTAHYVFALGISRFLAFAHWVIQVYETRGKYLLLVGNGYFWFMTAFLAEMI 60
           MQNAKMIEPFTAHYVFALGISRFL+ AHW+IQ+YET G+YL L+G+GYFWF+ AF+AEM+
Sbjct: 185 MQNAKMIEPFTAHYVFALGISRFLSCAHWIIQIYETGGRYLYLIGSGYFWFLAAFIAEMV 244

Query: 61  QSFILADFCYYYIK 75
           Q+FIL DFCYYY+K
Sbjct: 245 QTFILTDFCYYYVK 258

[Close]

BLAST of Cla002700 vs. TrEMBL
Match: B9SYM6_RICCO (ER lumen protein retaining receptor, putative OS=Ricinus communis GN=RCOM_1417710 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.5e-29
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1   MQNAKMIEPFTAHYVFALGISRFLAFAHWVIQVYETRGKYLLLVGNGYFWFMTAFLAEMI 60
           MQNAKMIEPFT+HYVFALG++RFLA AHW+IQVYETRG+YL LVG+GYFWF  A LAE +
Sbjct: 169 MQNAKMIEPFTSHYVFALGVARFLACAHWIIQVYETRGRYLFLVGSGYFWFPMALLAEAV 228

Query: 61  QSFILADFCYYYIK 75
           Q+FILADFCYYYIK
Sbjct: 229 QTFILADFCYYYIK 242

[Close]

BLAST of Cla002700 vs. TrEMBL
Match: A0A067FS10_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0252432mg PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 5.6e-29
Identity = 58/74 (78.38%), Postives = 69/74 (93.24%), Query Frame = 1


Query: 1   MQNAKMIEPFTAHYVFALGISRFLAFAHWVIQVYETRGKYLLLVGNGYFWFMTAFLAEMI 60
           MQNAKMIEPFT+HYVFALG++RFL+FAHW++Q+ ETRG+YL L+G+GY WF  AFLAEMI
Sbjct: 109 MQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMI 168

Query: 61  QSFILADFCYYYIK 75
           Q+FILADFCYYYIK
Sbjct: 169 QTFILADFCYYYIK 182

[Close]

BLAST of Cla002700 vs. TrEMBL
Match: V4U3Q7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021457mg PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 5.6e-29
Identity = 58/74 (78.38%), Postives = 69/74 (93.24%), Query Frame = 1


Query: 1   MQNAKMIEPFTAHYVFALGISRFLAFAHWVIQVYETRGKYLLLVGNGYFWFMTAFLAEMI 60
           MQNAKMIEPFT+HYVFALG++RFL+FAHW++Q+ ETRG+YL L+G+GY WF  AFLAEMI
Sbjct: 206 MQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMI 265

Query: 61  QSFILADFCYYYIK 75
           Q+FILADFCYYYIK
Sbjct: 266 QTFILADFCYYYIK 279

[Close]

BLAST of Cla002700 vs. NCBI nr
Match: gi|449453292|ref|XP_004144392.1| (PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 isoform X1 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 3.8e-34
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 1   MQNAKMIEPFTAHYVFALGISRFLAFAHWVIQVYETRGKYLLLVGNGYFWFMTAFLAEMI 60
           MQNAKMIEPFTAHYVFALGISRFLAFAHW+IQVYET GKYLLLVGNGYFWFM AFLAEMI
Sbjct: 213 MQNAKMIEPFTAHYVFALGISRFLAFAHWIIQVYETGGKYLLLVGNGYFWFMAAFLAEMI 272

Query: 61  QSFILADFCYYYIK 75
           QSFILADFCYYY+K
Sbjct: 273 QSFILADFCYYYVK 286

[Close]

BLAST of Cla002700 vs. NCBI nr
Match: gi|659120874|ref|XP_008460393.1| (PREDICTED: ER lumen protein-retaining receptor [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 6.4e-34
Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 1   MQNAKMIEPFTAHYVFALGISRFLAFAHWVIQVYETRGKYLLLVGNGYFWFMTAFLAEMI 60
           MQNAKMIEPFTAHYVFALGISRFLAFAHW+IQVYETRG+YLLLVGNGYFWFM AF+AEMI
Sbjct: 213 MQNAKMIEPFTAHYVFALGISRFLAFAHWIIQVYETRGEYLLLVGNGYFWFMAAFIAEMI 272

Query: 61  QSFILADFCYYYIK 75
           QSFIL DFCYYYIK
Sbjct: 273 QSFILTDFCYYYIK 286

[Close]

BLAST of Cla002700 vs. NCBI nr
Match: gi|703128704|ref|XP_010104163.1| (Putative ER lumen protein retaining receptor [Morus notabilis])

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-29
Identity = 58/74 (78.38%), Postives = 69/74 (93.24%), Query Frame = 1


Query: 1   MQNAKMIEPFTAHYVFALGISRFLAFAHWVIQVYETRGKYLLLVGNGYFWFMTAFLAEMI 60
           MQNAKMIEPFTAHYVFALGISRFL+ AHW+IQ+YET G+YL L+G+GYFWF+ AF+AEM+
Sbjct: 185 MQNAKMIEPFTAHYVFALGISRFLSCAHWIIQIYETGGRYLYLIGSGYFWFLAAFIAEMV 244

Query: 61  QSFILADFCYYYIK 75
           Q+FIL DFCYYY+K
Sbjct: 245 QTFILTDFCYYYVK 258

[Close]

BLAST of Cla002700 vs. NCBI nr
Match: gi|223529341|gb|EEF31309.1| (ER lumen protein retaining receptor, putative [Ricinus communis])

HSP 1 Score: 135.6 bits (340), Expect = 3.6e-29
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1   MQNAKMIEPFTAHYVFALGISRFLAFAHWVIQVYETRGKYLLLVGNGYFWFMTAFLAEMI 60
           MQNAKMIEPFT+HYVFALG++RFLA AHW+IQVYETRG+YL LVG+GYFWF  A LAE +
Sbjct: 169 MQNAKMIEPFTSHYVFALGVARFLACAHWIIQVYETRGRYLFLVGSGYFWFPMALLAEAV 228

Query: 61  QSFILADFCYYYIK 75
           Q+FILADFCYYYIK
Sbjct: 229 QTFILADFCYYYIK 242

[Close]

BLAST of Cla002700 vs. NCBI nr
Match: gi|694314641|ref|XP_009372044.1| (PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Pyrus x bretschneideri])

HSP 1 Score: 135.6 bits (340), Expect = 3.6e-29
Identity = 59/74 (79.73%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 1   MQNAKMIEPFTAHYVFALGISRFLAFAHWVIQVYETRGKYLLLVGNGYFWFMTAFLAEMI 60
           MQNAKMIEPFT+HYVFALGISRFLA AHW+IQ+YETRG Y+ LVG+GYFW +  FL EM+
Sbjct: 185 MQNAKMIEPFTSHYVFALGISRFLACAHWIIQIYETRGGYIFLVGSGYFWILAVFLCEMV 244

Query: 61  QSFILADFCYYYIK 75
           Q+FILADFCYYYIK
Sbjct: 245 QTFILADFCYYYIK 258

The following BLAST results are available for this feature:

BLAST of Cla002700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L959_CUCSA	2.6e-34	94.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G634300 PE=4 SV=1	[more]
W9RN69_9ROSA	8.7e-30	78.38	Putative ER lumen protein retaining receptor OS=Morus notabilis GN=L484_007002 P...	[more]
B9SYM6_RICCO	2.5e-29	81.08	ER lumen protein retaining receptor, putative OS=Ricinus communis GN=RCOM_141771...	[more]
A0A067FS10_CITSI	5.6e-29	78.38	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0252432mg PE=4 ...	[more]
V4U3Q7_9ROSI	5.6e-29	78.38	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021457mg PE=4 SV=1	[more]

BLAST of Cla002700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453292\|ref\|XP_004144392.1\|	3.8e-34	94.59	PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 isoform X1 [Cucu...	[more]
gi\|659120874\|ref\|XP_008460393.1\|	6.4e-34	93.24	PREDICTED: ER lumen protein-retaining receptor [Cucumis melo]	[more]
gi\|703128704\|ref\|XP_010104163.1\|	1.3e-29	78.38	Putative ER lumen protein retaining receptor [Morus notabilis]	[more]
gi\|223529341\|gb\|EEF31309.1\|	3.6e-29	81.08	ER lumen protein retaining receptor, putative [Ricinus communis]	[more]
gi\|694314641\|ref\|XP_009372044.1\|	3.6e-29	79.73	PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Pyrus x bretsch...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000133	ER_ret_rcpt

Vocabulary: **Biological Process**
Term	Definition
GO:0006621	protein retention in ER lumen

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0046923	ER retention sequence binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006621	protein retention in ER lumen
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046923	ER retention sequence binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002700	Cla002700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000133	ER lumen protein retaining receptor	PANTHER	PTHR10585	ER LUMEN PROTEIN RETAINING RECEPTOR	coord: 1..75 score: 7.9
IPR000133	ER lumen protein retaining receptor	PFAM	PF00810	ER_lumen_recept	coord: 1..31 score: 5.
None	No IPR available	PANTHER	PTHR10585:SF36	SUBFAMILY NOT NAMED	coord: 1..75 score: 7.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002700	Cla97C07G130440	Watermelon (97103) v2	wmwmbB176
Cla002700	Cp4.1LG15g01520	Cucurbita pepo (Zucchini)	cpewmB258
Cla002700	CsGy3G025750	Cucumber (Gy14) v2	cgybwmB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002700	Cucumber (Chinese Long) v2	cuwmB227
Cla002700	Cucumber (Chinese Long) v2	cuwmB587
Cla002700	Cucurbita pepo (Zucchini)	cpewmB701
Cla002700	Bottle gourd (USVL1VR-Ls)	lsiwmB194
Cla002700	Bottle gourd (USVL1VR-Ls)	lsiwmB357
Cla002700	Cucumber (Gy14) v2	cgybwmB549
Cla002700	Melon (DHL92) v3.6.1	medwmB362
Cla002700	Silver-seed gourd	carwmB0285
Cla002700	Silver-seed gourd	carwmB0779
Cla002700	Cucumber (Chinese Long) v3	cucwmB234
Cla002700	Wax gourd	wgowmB266
Cla002700	Cucumber (Gy14) v1	cgywmB084
Cla002700	Cucumber (Gy14) v1	cgywmB266
Cla002700	Cucurbita maxima (Rimu)	cmawmB492
Cla002700	Cucurbita maxima (Rimu)	cmawmB559
Cla002700	Cucurbita moschata (Rifu)	cmowmB486
Cla002700	Cucurbita moschata (Rifu)	cmowmB552
Cla002700	Melon (DHL92) v3.5.1	mewmB364
Cla002700	Watermelon (Charleston Gray)	wcgwmB026
Cla002700	Watermelon (Charleston Gray)	wcgwmB374