Cla002674 (gene) Watermelon (97103) v1

Overview
NameCla002674
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 13818432 .. 13821586 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGACAAGATGGATGCGTCCTGCGTTGCCAACAAGCACATATATCCCAGGGACGCTTCCTAACATTTGTACTTTATTTGCTTTTATGTCTTTCTACATTTTTAACTCTTTCAGCATTATTTCATTTTTTTTTTCTTTTCTTTATTTGTTATTATTTGCTTTGAAAAGTTTTTGTTTGAATGCTATCTATATCATTCTTTGATGAGTAAAAATTGAACTCTTTGCAAAATATTATTGAAACTCGGATAATTACAAGGAGTCGACATCAAAACAATGCGACACGATTAACTCGATGCCTGGGGGGAAGGGATCTGAAGCCATTTAGTCAGATAACAAGATTTGAAAAGATCGCGATCAGATCAAGAATTCGAAAAGCTGACTGCGCGTTCGCAGGCTAACGCCAACTGGTGTCAGACCATTTAATGCGACTATGATGTCACGTATTGAGCCGATAACCCACGTGCCCAACTAAAACCCTTTATAAACCCCTTTTCAGCCCTTTTTCGAGTTTACGCTTTCATTCCTCTCTGAAATCTCTGACTACCGCTGCAATTTCCATAGAATTCGAAAACCCTCTCCAACTTTCCGATTCTCACCCACTTTTCTCTCTTTTTACCTCAACAGCCATGGCTTCCCAGCAACTCACCTCCTCCAAAAGCCCTAAACTCATTGTCTCCCAAAAGGCTGGCATTGCCTCATTCTCGAGGCATGGTAGTCGGAATCCGTCCACTACCTCCACCACACCTGAACCCCTTGTTGTTGTCCGCCCCAACAGTCCTGAGTTGGAGGCGGCATTAGCCCCATCTCCGCCACGCTCTAGGGACTTGTCTGAAGCTCAAGAGGTGGAGAGGAATGACGAATCCAACATCTTCGGAGACATTCTAGACACAATAGATGAAGAAGACAATCACTGGTTGGATGGGTTGGTCAACCAGAGGATGAAGAGTATGCCGCATGGGTCAGTCCCTACGGCGAGTGGTCTTGATGAGTCAGACTTCGATGACAGACCCATTGGAAAGGTAATTGCGGCGGTGGAAAAGAATAAGTCCACCGCGAAAAGAAAAAACAAGCTAGTTAGGGCCATGGACGATGAAGTCGAGGAAGATGTTCCCCCACTAAGAAGAAAGAATGAAAAAATTAGGATACGGGGACATCCGAGGCTATCACAGCAACTTCTGCCGCATCATCTGTTGAGCGGCTAGTAGCGAGGGCGGCAAAGAAGTCCAAGAAACTGAAAGACCACTTCAAAAGAATGAAAGAAAGGACTGAGTCGTTCCTCGCTGCAAAGAAGAAAAGAAAAGAAGAGGAAATCGCATCTAGCGAACAAGCTACCAAGGAGGCCGCCAGAGAAGCTTCGTTTGTTCATCGCATAGCAGAGATTGCGGCGGAGTTTGAAATTGAGTTGGAAGGAAGTAATGCGGAGAGGGTCCCCAAAGCCGAAAGCATCAAGCGCAATTTGAAGAAGATAAGGGAGGAGAAGAAAAAAGAAAGGGAGGTAGCAATAAGCAAGAAAAGGCTAAGAAAAAGAAGAGGACTAAGGTGGCTAAGGCACCTGCAGTCGTGATAAGGAATTTGGACGCAGGCGGAGCAAAGAGAATGCCTGCTAGTCTCACCAATAAGAACGTGAAAGGAAAAGAGAAGTTGGTTGAGGAACCAACAAAGGAGGCGGCAAAGTGCCAAAAGAAGCAGTTCAGTAGGCTCTATACTAAAGTGGGGTTTTTCCCAGAGCCAATTGAGCTGCTCGCCTTCATCATCCAAGGAGTTGACGCAATAGGTTGGAGGCAATTTTGTAAAAGTGCCAAAGTCATTCAACCCACCGCCATGGAGGCATTCTACAAAAGAACTATCCACCGAAAAGCATACAAGGTCAAAGTTGAAGATGAGGTGATTTCCTTCGAGCCTTAGGAGATCAATGGGTTGTTTGATCTTCTCAACATTGTGGCGGCAGATGGTAATAAATCATGTTGACGCCAACAGAAGCCGAAATGAATGATGCCCTGTCACACCCCACCCCGAACTATCCTCCCATAGCCCGAGACGGAGTGTGAGAACAACAGTTACCGACTACCTTGTCACATAACCTACTATCACATTCGCCTCACTTTCATATAAATCCTTCCTAGGACGGTAATACCATTAACACACTCTGGACCAACCTCGACTTCGATCGGCAACGGGAACTGTCATTCTACTTGAAAATGGAAAACATATAAAAAGGGTGAGCTAACAGCTCAGTGAGTAATGGTTTTCTGAAAACATTTTACTTTAACTGTAGAACTGTTTATAATATAAACATTGTCAACCATGCATAAAAATATAACAGTTCAAATCATATTATAACATGATTAAATCATTGTTATATCATGTATACATATCTGTTTGGAATAAATAATAAAAATCTCATTCATTCAAAATACTTTTTCCCTAGTTGAGGCGGTGCAATGCTAAACGCTCCTCAACATCGATTTTCCTTAGCTATGTGGAGTAATCTCAACACATTAGAGTCGTCTATACCTCTATGTGCACATAAGTTTTATATTCCGGGCCGCCCACAATACCTTCTCCGAGTCCCTGAGCATTGGGGTCCTATTTCCATATCCAGGCTACCCATCTGCCTTCTTCAGCATTGGGTGCCTTTTTCTATATTCATATCCAGGTTACCCATCTGCCTTCTACGAGTCCCTTAGCATTGGGTACCTTTTTCTATATCCCGGCTACCCTTTGGCCTTCTCCGAAGTCCCTCAACCTCGGGTGCCTTTTCAAAATTTTTTATAAAACACAATACATACTTTGAAAACATTATATCAATAACTCATAAGTTAACCGTTTCCAAATATCAAGCCGCTTTACTACGTGCAGAGCCCCTCGAACCAGGACGTGGAGAAAATGTCTTACGGGTCGAGCCCTATGGGTTCGCCGCCACACCATTTTTACCACGCTTCTCCAATACACCATTCTCGTGAGTCATCCACTTCCCGATTCTCTGCTTCGCTTAAGAACAACCCAAATCGGAATGGGAATCTGTCCGCTTGGAGAAAACTCCACCGTCCCCAGGATTCCGATGATGAGGAGGAAGACGATGATGAGGAGGAAGACGATGATCGGGATTCGAAAAACGCAGGTGTTACTCACTTGTACTTTACCCAAGAATAA

mRNA sequence

ATGAGGACAAGATGGATGCGTCCTGCGTTGCCAACAAGCACATATATCCCAGGGACGCTTCCTAACATTTGTTACCCATCTGCCTTCTACGAGTCCCTTAGCATTGGGTACCTTTTTCTATATCCCGGCTACCCTTTGGCCTTCTCCGAAGTCCCTCAACCTCGGCCGCTTTACTACGTGCAGAGCCCCTCGAACCAGGACGTGGAGAAAATGTCTTACGGGTCGAGCCCTATGGGTTCGCCGCCACACCATTTTTACCACGCTTCTCCAATACACCATTCTCGTGAGTCATCCACTTCCCGATTCTCTGCTTCGCTTAAGAACAACCCAAATCGGAATGGGAATCTGTCCGCTTGGAGAAAACTCCACCGTCCCCAGGATTCCGATGATGAGGAGGAAGACGATGATGAGGAGGAAGACGATGATCGGGATTCGAAAAACGCAGGTGTTACTCACTTGTACTTTACCCAAGAATAA

Coding sequence (CDS)

ATGAGGACAAGATGGATGCGTCCTGCGTTGCCAACAAGCACATATATCCCAGGGACGCTTCCTAACATTTGTTACCCATCTGCCTTCTACGAGTCCCTTAGCATTGGGTACCTTTTTCTATATCCCGGCTACCCTTTGGCCTTCTCCGAAGTCCCTCAACCTCGGCCGCTTTACTACGTGCAGAGCCCCTCGAACCAGGACGTGGAGAAAATGTCTTACGGGTCGAGCCCTATGGGTTCGCCGCCACACCATTTTTACCACGCTTCTCCAATACACCATTCTCGTGAGTCATCCACTTCCCGATTCTCTGCTTCGCTTAAGAACAACCCAAATCGGAATGGGAATCTGTCCGCTTGGAGAAAACTCCACCGTCCCCAGGATTCCGATGATGAGGAGGAAGACGATGATGAGGAGGAAGACGATGATCGGGATTCGAAAAACGCAGGTGTTACTCACTTGTACTTTACCCAAGAATAA

Protein sequence

MRTRWMRPALPTSTYIPGTLPNICYPSAFYESLSIGYLFLYPGYPLAFSEVPQPRPLYYVQSPSNQDVEKMSYGSSPMGSPPHHFYHASPIHHSRESSTSRFSASLKNNPNRNGNLSAWRKLHRPQDSDDEEEDDDEEEDDDRDSKNAGVTHLYFTQE
Homology
[Close]
BLAST of Cla002674 vs. TrEMBL
Match: A0A0A0K4T2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G018790 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.3e-40
Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 1 

Query: 55  RPLYYVQSPSNQDVEKMSYGSSPMGSPPHHFYHASPIHHSRESSTSRFSASLKNNPNRNG 114
           RPLYYVQSPSN DVEKMSYGSSPMGSPPHHFYHASPIHHSRESSTSRFSASLK N NRNG
Sbjct: 23  RPLYYVQSPSNHDVEKMSYGSSPMGSPPHHFYHASPIHHSRESSTSRFSASLKINQNRNG 82

Query: 115 NLSAWRKLHRPQDSD-DEEEDDDEEEDDDRDSK 147
           N+SAWRKLH  QDSD D+EEDD+EEE++DRDSK
Sbjct: 83  NVSAWRKLHHAQDSDGDDEEDDEEEENEDRDSK 115

[Close]
BLAST of Cla002674 vs. TrEMBL
Match: W9RTN2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014344 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.3e-29
Identity = 63/86 (73.26%), Postives = 72/86 (83.72%), Query Frame = 1 

Query: 55  RPLYYVQSPSNQDVEKMSYGSSPMGSPPHHFYHASPIHHSRESSTSRFSASLKNNPNRNG 114
           RPLYYVQSPSN DVEKMSYGSSP+GSP HH+YH SPIHHSRESSTSRFSASLKN      
Sbjct: 30  RPLYYVQSPSNHDVEKMSYGSSPLGSPHHHYYHCSPIHHSRESSTSRFSASLKN----TR 89

Query: 115 NLSAWRKLHRPQDSDDEEEDDDEEED 141
           NLSAW+K+ R ++SD E++DDD+  D
Sbjct: 90  NLSAWKKIQRGEESDHEDDDDDDRND 111

[Close]
BLAST of Cla002674 vs. TrEMBL
Match: A0A059APK6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01480 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-27
Identity = 61/89 (68.54%), Postives = 72/89 (80.90%), Query Frame = 1 

Query: 55  RPLYYVQSPSNQDVEKMSYGSSPMGSPPHHFYHASPIHHSRESSTSRFSASLKNNPNRNG 114
           RPLYYVQSPSN D EKMSYGSSP GSP H +YH SPIHHSRESSTSRFSASLKN+  R+ 
Sbjct: 28  RPLYYVQSPSNHDAEKMSYGSSPAGSPTHPYYHCSPIHHSRESSTSRFSASLKNSNPRHL 87

Query: 115 NLSAWRKLHRPQDSDDEEEDDDEEEDDDR 144
              AWRKLHR  ++DD+E+D++E+ +  R
Sbjct: 88  YGGAWRKLHRGHETDDDEDDEEEDGEGGR 116

[Close]
BLAST of Cla002674 vs. TrEMBL
Match: A0A0S3SE81_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G245200 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.0e-27
Identity = 68/107 (63.55%), Postives = 78/107 (72.90%), Query Frame = 1 

Query: 52  PQPRPLYYVQSPSNQDVEKMSYGSSPMGSPPHHF--YHASPIHHSRESSTSRFSASLKNN 111
           P  RPLYYVQSPSN DVEKMSYGSSPMGSP HHF  Y +SPIHHSRESSTSRFSASLKN 
Sbjct: 27  PPRRPLYYVQSPSNHDVEKMSYGSSPMGSPHHHFHYYLSSPIHHSRESSTSRFSASLKNP 86

Query: 112 PNRNGNLSAWRKLH-RPQDSDDEEEDDDEEEDDDRDSKNAGVTHLYF 156
            N + N   W+KLH  PQ   D ++D D+ +D DR S+N  +   +F
Sbjct: 87  RNFSSN---WKKLHPHPQHDADPDDDADDGDDLDRSSRNLRLYFCFF 130

[Close]
BLAST of Cla002674 vs. TrEMBL
Match: A0A0L9V7Q3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g192700 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.0e-27
Identity = 68/107 (63.55%), Postives = 78/107 (72.90%), Query Frame = 1 

Query: 52  PQPRPLYYVQSPSNQDVEKMSYGSSPMGSPPHHF--YHASPIHHSRESSTSRFSASLKNN 111
           P  RPLYYVQSPSN DVEKMSYGSSPMGSP HHF  Y +SPIHHSRESSTSRFSASLKN 
Sbjct: 27  PPRRPLYYVQSPSNHDVEKMSYGSSPMGSPHHHFHYYLSSPIHHSRESSTSRFSASLKNP 86

Query: 112 PNRNGNLSAWRKLH-RPQDSDDEEEDDDEEEDDDRDSKNAGVTHLYF 156
            N + N   W+KLH  PQ   D ++D D+ +D DR S+N  +   +F
Sbjct: 87  RNFSSN---WKKLHPHPQHDADPDDDADDGDDLDRSSRNLRLYFCFF 130

[Close]
BLAST of Cla002674 vs. NCBI nr
Match: gi|449454263|ref|XP_004144875.1| (PREDICTED: uncharacterized protein LOC101215215 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 3.3e-40
Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 1 

Query: 55  RPLYYVQSPSNQDVEKMSYGSSPMGSPPHHFYHASPIHHSRESSTSRFSASLKNNPNRNG 114
           RPLYYVQSPSN DVEKMSYGSSPMGSPPHHFYHASPIHHSRESSTSRFSASLK N NRNG
Sbjct: 23  RPLYYVQSPSNHDVEKMSYGSSPMGSPPHHFYHASPIHHSRESSTSRFSASLKINQNRNG 82

Query: 115 NLSAWRKLHRPQDSD-DEEEDDDEEEDDDRDSK 147
           N+SAWRKLH  QDSD D+EEDD+EEE++DRDSK
Sbjct: 83  NVSAWRKLHHAQDSDGDDEEDDEEEENEDRDSK 115

[Close]
BLAST of Cla002674 vs. NCBI nr
Match: gi|659094124|ref|XP_008447896.1| (PREDICTED: uncharacterized protein LOC103490245 [Cucumis melo])

HSP 1 Score: 170.6 bits (431), Expect = 2.1e-39
Identity = 80/93 (86.02%), Postives = 87/93 (93.55%), Query Frame = 1 

Query: 55  RPLYYVQSPSNQDVEKMSYGSSPMGSPPHHFYHASPIHHSRESSTSRFSASLKNNPNRNG 114
           RPLYYVQSPSN DVEKMSYGSSPMGSPPHHFYHASPIHHSRESSTSRFSASLK+N NRNG
Sbjct: 23  RPLYYVQSPSNHDVEKMSYGSSPMGSPPHHFYHASPIHHSRESSTSRFSASLKSNQNRNG 82

Query: 115 NLSAWRKLHRPQDS-DDEEEDDDEEEDDDRDSK 147
           N+SAWRKLH  +DS DD+EEDD +EE++DRDSK
Sbjct: 83  NVSAWRKLHLAEDSDDDDEEDDGDEENEDRDSK 115

[Close]
BLAST of Cla002674 vs. NCBI nr
Match: gi|703125434|ref|XP_010103304.1| (hypothetical protein L484_014344 [Morus notabilis])

HSP 1 Score: 135.6 bits (340), Expect = 7.7e-29
Identity = 63/86 (73.26%), Postives = 72/86 (83.72%), Query Frame = 1 

Query: 55  RPLYYVQSPSNQDVEKMSYGSSPMGSPPHHFYHASPIHHSRESSTSRFSASLKNNPNRNG 114
           RPLYYVQSPSN DVEKMSYGSSP+GSP HH+YH SPIHHSRESSTSRFSASLKN      
Sbjct: 30  RPLYYVQSPSNHDVEKMSYGSSPLGSPHHHYYHCSPIHHSRESSTSRFSASLKN----TR 89

Query: 115 NLSAWRKLHRPQDSDDEEEDDDEEED 141
           NLSAW+K+ R ++SD E++DDD+  D
Sbjct: 90  NLSAWKKIQRGEESDHEDDDDDDRND 111

[Close]
BLAST of Cla002674 vs. NCBI nr
Match: gi|702464018|ref|XP_010028799.1| (PREDICTED: uncharacterized protein LOC104419000 [Eucalyptus grandis])

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-27
Identity = 61/89 (68.54%), Postives = 72/89 (80.90%), Query Frame = 1 

Query: 55  RPLYYVQSPSNQDVEKMSYGSSPMGSPPHHFYHASPIHHSRESSTSRFSASLKNNPNRNG 114
           RPLYYVQSPSN D EKMSYGSSP GSP H +YH SPIHHSRESSTSRFSASLKN+  R+ 
Sbjct: 28  RPLYYVQSPSNHDAEKMSYGSSPAGSPTHPYYHCSPIHHSRESSTSRFSASLKNSNPRHL 87

Query: 115 NLSAWRKLHRPQDSDDEEEDDDEEEDDDR 144
              AWRKLHR  ++DD+E+D++E+ +  R
Sbjct: 88  YGGAWRKLHRGHETDDDEDDEEEDGEGGR 116

[Close]
BLAST of Cla002674 vs. NCBI nr
Match: gi|502144375|ref|XP_004505674.1| (PREDICTED: uncharacterized protein LOC101514813 [Cicer arietinum])

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-27
Identity = 68/107 (63.55%), Postives = 78/107 (72.90%), Query Frame = 1 

Query: 52  PQPRPLYYVQSPSNQDVEKMSYGSSPMGSPPH---HFYHASPIHHSRESSTSRFSASLKN 111
           P  RPLYYVQSPSN DVEKMSYGSSP+GSPPH   H+Y +SPIHHSRESSTSRFSASLKN
Sbjct: 30  PPRRPLYYVQSPSNHDVEKMSYGSSPVGSPPHQNFHYYLSSPIHHSRESSTSRFSASLKN 89

Query: 112 NPNRNGNLSAWRKLHRPQDSDDEEEDDDEEEDDDRDSKNAGVTHLYF 156
              RN   S+W+KLH     DD +++DDE++D   DS       LYF
Sbjct: 90  --PRNITSSSWKKLHNRNGHDDIDQEDDEDDDSVYDSTRN--VRLYF 132

The following BLAST results are available for this feature:
BLAST of Cla002674 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4T2_CUCSA2.3e-4088.17Uncharacterized protein OS=Cucumis sativus GN=Csa_7G018790 PE=4 SV=1[more]
W9RTN2_9ROSA5.3e-2973.26Uncharacterized protein OS=Morus notabilis GN=L484_014344 PE=4 SV=1[more]
A0A059APK6_EUCGR1.0e-2768.54Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01480 PE=4 SV=1[more]
A0A0S3SE81_PHAAN5.0e-2763.55Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G245200 PE=... [more]
A0A0L9V7Q3_PHAAN5.0e-2763.55Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g192700 PE=4 SV=1[more]
BLAST of Cla002674 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449454263|ref|XP_004144875.1|3.3e-4088.17PREDICTED: uncharacterized protein LOC101215215 [Cucumis sativus][more]
gi|659094124|ref|XP_008447896.1|2.1e-3986.02PREDICTED: uncharacterized protein LOC103490245 [Cucumis melo][more]
gi|703125434|ref|XP_010103304.1|7.7e-2973.26hypothetical protein L484_014344 [Morus notabilis][more]
gi|702464018|ref|XP_010028799.1|1.4e-2768.54PREDICTED: uncharacterized protein LOC104419000 [Eucalyptus grandis][more]
gi|502144375|ref|XP_004505674.1|4.2e-2763.55PREDICTED: uncharacterized protein LOC101514813 [Cicer arietinum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002674Cla002674.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31852FAMILY NOT NAMEDcoord: 54..145
score: 4.6
NoneNo IPR availablePANTHERPTHR31852:SF8LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEINcoord: 54..145
score: 4.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla002674Melon (DHL92) v3.5.1mewmB270
Cla002674Watermelon (Charleston Gray)wcgwmB225
Cla002674Cucumber (Chinese Long) v2cuwmB018
Cla002674Cucumber (Gy14) v2cgybwmB021
Cla002674Melon (DHL92) v3.6.1medwmB261
Cla002674Watermelon (97103) v2wmwmbB126
Cla002674Cucumber (Gy14) v1cgywmB713