Cla002661 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002661
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr3 : 13373687 .. 13374577 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACGCCTACAGACGCTGAAATGAATGACGCCCTCACAATCAACGCCAAATCGGGGTCAGAGTGGAACACTTCCCCAAAGGGCATTCAATCATTGGCGCCTAACTGCTTGATCGCCGAGGCCAACCTGTGGCTTTATTTCATCAAGCGGTTGCTGCTTCCCACAACGCATGACGCCTCAATTTCAAGAGACCGGGCCATGGTCATTTACTGCATCATGTGGGGAATTCAGCTGGACGTGGGACGCATCATTGCCCCACAGATTCGGGGGTTATTCTTCAAGCCAAGGGGTCAGTTATTCTTCCCCTTTCTTGTGACTAGAATGTGCGCCAACACACAATTCATGGAGGATGCGCCAATCAGATCAGTAAACGGAGTCCTTTCAGCGCAGAGTTTGAGACGAATATTGAAGGACTCACCGCATCTGCTTGACGTGGCCAACTCAAAGAAGAGGCCGCCAAAGTCACAAGAACCATCATCCCCCCAACCTCCTCAACCAAAGAAGAGGAAACTAGTCAAGAAGAATTTCGAGATTCAGGCGTCAAGTTCACAACCTGGTGAAGCCGAAGAAGCTCTTCAGCTCGACGCATACACCCAAGCCTTGACCATTTATACTCATCCCATCGCCCCAATCACTGAGGAGCCCTCTTCACCACCAACTTCCCCTTATCCTTCCCCGAAAATCCAAAATGAGCCACTCCATCTCCCTACCACCCAACGCAGCATTCCAACGCCTCTTCAGCTCCCTATCGCAGACTTAAATGAAGAGACGAAGGAAGTGTCGCCGCCTTCTTCGCCCCACCTGGAGTTGACCCTCTCCCCGCCTCAAGTATCCACCTTTCGAGAGGCAACTCCACCACCACCGCACCACCCGTTGAGCCGACCCTGA

mRNA sequence

ATGTCGACGCCTACAGACGCTGAAATGAATGACGCCCTCACAATCAACGCCAAATCGGGGTCAGAGTGGAACACTTCCCCAAAGGGCATTCAATCATTGGCGCCTAACTGCTTGATCGCCGAGGCCAACCTGTGGCTTTATTTCATCAAGCGGTTGCTGCTTCCCACAACGCATGACGCCTCAATTTCAAGAGACCGGGCCATGGTCATTTACTGCATCATGTGGGGAATTCAGCTGGACGTGGGACGCATCATTGCCCCACAGATTCGGGGGTTATTCTTCAAGCCAAGGGGTCAGTTATTCTTCCCCTTTCTTGTGACTAGAATGTGCGCCAACACACAATTCATGGAGGATGCGCCAATCAGATCAGTAAACGGAGTCCTTTCAGCGCAGAGTTTGAGACGAATATTGAAGGACTCACCGCATCTGCTTGACGTGGCCAACTCAAAGAAGAGGCCGCCAAAGTCACAAGAACCATCATCCCCCCAACCTCCTCAACCAAAGAAGAGGAAACTAGTCAAGAAGAATTTCGAGATTCAGGCGTCAAGTTCACAACCTGGTGAAGCCGAAGAAGCTCTTCAGCTCGACGCATACACCCAAGCCTTGACCATTTATACTCATCCCATCGCCCCAATCACTGAGGAGCCCTCTTCACCACCAACTTCCCCTTATCCTTCCCCGAAAATCCAAAATGAGCCACTCCATCTCCCTACCACCCAACGCAGCATTCCAACGCCTCTTCAGCTCCCTATCGCAGACTTAAATGAAGAGACGAAGGAAGTGTCGCCGCCTTCTTCGCCCCACCTGGAGTTGACCCTCTCCCCGCCTCAAGTATCCACCTTTCGAGAGGCAACTCCACCACCACCGCACCACCCGTTGAGCCGACCCTGA

Coding sequence (CDS)

ATGTCGACGCCTACAGACGCTGAAATGAATGACGCCCTCACAATCAACGCCAAATCGGGGTCAGAGTGGAACACTTCCCCAAAGGGCATTCAATCATTGGCGCCTAACTGCTTGATCGCCGAGGCCAACCTGTGGCTTTATTTCATCAAGCGGTTGCTGCTTCCCACAACGCATGACGCCTCAATTTCAAGAGACCGGGCCATGGTCATTTACTGCATCATGTGGGGAATTCAGCTGGACGTGGGACGCATCATTGCCCCACAGATTCGGGGGTTATTCTTCAAGCCAAGGGGTCAGTTATTCTTCCCCTTTCTTGTGACTAGAATGTGCGCCAACACACAATTCATGGAGGATGCGCCAATCAGATCAGTAAACGGAGTCCTTTCAGCGCAGAGTTTGAGACGAATATTGAAGGACTCACCGCATCTGCTTGACGTGGCCAACTCAAAGAAGAGGCCGCCAAAGTCACAAGAACCATCATCCCCCCAACCTCCTCAACCAAAGAAGAGGAAACTAGTCAAGAAGAATTTCGAGATTCAGGCGTCAAGTTCACAACCTGGTGAAGCCGAAGAAGCTCTTCAGCTCGACGCATACACCCAAGCCTTGACCATTTATACTCATCCCATCGCCCCAATCACTGAGGAGCCCTCTTCACCACCAACTTCCCCTTATCCTTCCCCGAAAATCCAAAATGAGCCACTCCATCTCCCTACCACCCAACGCAGCATTCCAACGCCTCTTCAGCTCCCTATCGCAGACTTAAATGAAGAGACGAAGGAAGTGTCGCCGCCTTCTTCGCCCCACCTGGAGTTGACCCTCTCCCCGCCTCAAGTATCCACCTTTCGAGAGGCAACTCCACCACCACCGCACCACCCGTTGAGCCGACCCTGA

Protein sequence

MSTPTDAEMNDALTINAKSGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRLLLPTTHDASISRDRAMVIYCIMWGIQLDVGRIIAPQIRGLFFKPRGQLFFPFLVTRMCANTQFMEDAPIRSVNGVLSAQSLRRILKDSPHLLDVANSKKRPPKSQEPSSPQPPQPKKRKLVKKNFEIQASSSQPGEAEEALQLDAYTQALTIYTHPIAPITEEPSSPPTSPYPSPKIQNEPLHLPTTQRSIPTPLQLPIADLNEETKEVSPPSSPHLELTLSPPQVSTFREATPPPPHHPLSRP

Homology

[Close]

BLAST of Cla002661 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 45/157 (28.66%), Postives = 80/157 (50.96%), Query Frame = 1


Query: 6   DAEMNDALTINAKSGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRLLLPTTHDASISRD 65
           + ++ + L   A  G++W  S KG  +   + L   A +W +F+   LL +TH  +ISR+
Sbjct: 154 EEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRN 213

Query: 66  RAMVIYCIMWGIQLDVGRIIAPQIRGLFFKPRGQLFFPFLVTRMCANTQFMEDAPIRSVN 125
           RA+++Y ++ G  ++VGR+I  QIR    K +G L+FP L++ +C  +    +A    + 
Sbjct: 214 RAILLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELCIQSHVAWEASEPRLR 273

Query: 126 GVLSAQSLRRILKDSPHLLDVANSKKRPPKSQEPSSP 163
               A  L  I + S    + +   +   +  EPS P
Sbjct: 274 NT-GAMDLVAITRISSGRSEKSEKGEEEEEQDEPSRP 309

[Close]

BLAST of Cla002661 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.7e-10
Identity = 41/138 (29.71%), Postives = 73/138 (52.90%), Query Frame = 1


Query: 2   STPTDAEMNDALTINAKSGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRLLLPTTHDAS 61
           S  TD ++   L   A  G+ W  SP+G  +     L   A +W +F+    +P+TH  +
Sbjct: 78  SEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKT 137

Query: 62  ISRDRAMVIYCIMWGIQLDVGRIIAPQIRGL-FFKPRGQLFFPFLVTRMC--ANTQFMED 121
           +++DR +++Y I+ GI +++  I   +I+     + RG L+FP L+T++   AN  + +D
Sbjct: 138 VAKDRVLLLYSILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKD 197

Query: 122 APIRSVNGVLSAQSLRRI 137
             I    G +S  S+ RI
Sbjct: 198 EAIVHNAGAISTLSISRI 215

[Close]

BLAST of Cla002661 vs. TrEMBL
Match: W9S7D3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.0e-09
Identity = 30/103 (29.13%), Postives = 61/103 (59.22%), Query Frame = 1


Query: 8   EMNDALTINAKSGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRLLLPTTHDASISRDRA 67
           ++++ +      G+EW  + +G  +    CL     +W +F++  L+P++H   + ++RA
Sbjct: 123 QLDEVINELCVEGTEWWRATRGSMTFPKECLQPGPKIWYHFLRFRLMPSSHYRLVHKERA 182

Query: 68  MVIYCIMWGIQLDVGRIIAPQIRGLFFKPRGQLFFPFLVTRMC 111
           +++YC+M G  L+VGR+I  Q+     +  G L+FP L+T++C
Sbjct: 183 ILLYCMMKGRPLNVGRMIRQQVGVCAGRKNGGLWFPSLITQLC 225

[Close]

BLAST of Cla002661 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.2e-07
Identity = 34/96 (35.42%), Postives = 57/96 (59.38%), Query Frame = 1


Query: 44  LWLYFIKRLLLPTTHDASISRDRAMVIYCIMWGIQLDVGRIIAPQIRGLFFKPRGQLFFP 103
           +WL  IK+ ++PT H ++IS +R M++YCIM  I +++G+II+  I  L   PRG   F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 104 FLVTRMCANTQFM-EDAP-IRSVNGVLSAQSLRRIL 138
           +L+ ++C     M E  P +   +G+    +L RI+
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRII 123

[Close]

BLAST of Cla002661 vs. TrEMBL
Match: A0A061F2U9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024087 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-06
Identity = 31/92 (33.70%), Postives = 53/92 (57.61%), Query Frame = 1


Query: 20  GSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRLLLPTTHDASISRDRAMVIYCIMWGIQL 79
           G++W TS     S   + +  E  +WL+F+   LL +TH + +++DRA++IY I+    +
Sbjct: 96  GAQWKTSHDEPVSFKRSVMKKELQVWLHFVAARLLSSTHISDVTKDRAVLIYAIVAHKSI 155

Query: 80  DVGRIIAPQIRGLFFKPRGQLFFPFLVTRMCA 112
           DVG++I+  I       R  + FP L+T +CA
Sbjct: 156 DVGKVISHAILHTGRTKRDGIGFPSLITALCA 187

[Close]

BLAST of Cla002661 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 75.5 bits (184), Expect = 1.8e-10
Identity = 45/157 (28.66%), Postives = 80/157 (50.96%), Query Frame = 1


Query: 6   DAEMNDALTINAKSGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRLLLPTTHDASISRD 65
           + ++ + L   A  G++W  S KG  +   + L   A +W +F+   LL +TH  +ISR+
Sbjct: 154 EEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRN 213

Query: 66  RAMVIYCIMWGIQLDVGRIIAPQIRGLFFKPRGQLFFPFLVTRMCANTQFMEDAPIRSVN 125
           RA+++Y ++ G  ++VGR+I  QIR    K +G L+FP L++ +C  +    +A    + 
Sbjct: 214 RAILLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELCIQSHVAWEASEPRLR 273

Query: 126 GVLSAQSLRRILKDSPHLLDVANSKKRPPKSQEPSSP 163
               A  L  I + S    + +   +   +  EPS P
Sbjct: 274 NT-GAMDLVAITRISSGRSEKSEKGEEEEEQDEPSRP 309

[Close]

BLAST of Cla002661 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 73.6 bits (179), Expect = 6.7e-10
Identity = 41/138 (29.71%), Postives = 73/138 (52.90%), Query Frame = 1


Query: 2   STPTDAEMNDALTINAKSGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRLLLPTTHDAS 61
           S  TD ++   L   A  G+ W  SP+G  +     L   A +W +F+    +P+TH  +
Sbjct: 78  SEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKT 137

Query: 62  ISRDRAMVIYCIMWGIQLDVGRIIAPQIRGL-FFKPRGQLFFPFLVTRMC--ANTQFMED 121
           +++DR +++Y I+ GI +++  I   +I+     + RG L+FP L+T++   AN  + +D
Sbjct: 138 VAKDRVLLLYSILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKD 197

Query: 122 APIRSVNGVLSAQSLRRI 137
             I    G +S  S+ RI
Sbjct: 198 EAIVHNAGAISTLSISRI 215

[Close]

BLAST of Cla002661 vs. NCBI nr
Match: gi|703121924|ref|XP_010102456.1| (hypothetical protein L484_006967 [Morus notabilis])

HSP 1 Score: 70.5 bits (171), Expect = 5.7e-09
Identity = 30/103 (29.13%), Postives = 61/103 (59.22%), Query Frame = 1


Query: 8   EMNDALTINAKSGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRLLLPTTHDASISRDRA 67
           ++++ +      G+EW  + +G  +    CL     +W +F++  L+P++H   + ++RA
Sbjct: 123 QLDEVINELCVEGTEWWRATRGSMTFPKECLQPGPKIWYHFLRFRLMPSSHYRLVHKERA 182

Query: 68  MVIYCIMWGIQLDVGRIIAPQIRGLFFKPRGQLFFPFLVTRMC 111
           +++YC+M G  L+VGR+I  Q+     +  G L+FP L+T++C
Sbjct: 183 ILLYCMMKGRPLNVGRMIRQQVGVCAGRKNGGLWFPSLITQLC 225

[Close]

BLAST of Cla002661 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 3.1e-07
Identity = 34/96 (35.42%), Postives = 57/96 (59.38%), Query Frame = 1


Query: 44  LWLYFIKRLLLPTTHDASISRDRAMVIYCIMWGIQLDVGRIIAPQIRGLFFKPRGQLFFP 103
           +WL  IK+ ++PT H ++IS +R M++YCIM  I +++G+II+  I  L   PRG   F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 104 FLVTRMCANTQFM-EDAP-IRSVNGVLSAQSLRRIL 138
           +L+ ++C     M E  P +   +G+    +L RI+
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRII 123

[Close]

BLAST of Cla002661 vs. NCBI nr
Match: gi|590634332|ref|XP_007028347.1| (Uncharacterized protein TCM_024087 [Theobroma cacao])

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-06
Identity = 31/92 (33.70%), Postives = 53/92 (57.61%), Query Frame = 1


Query: 20  GSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRLLLPTTHDASISRDRAMVIYCIMWGIQL 79
           G++W TS     S   + +  E  +WL+F+   LL +TH + +++DRA++IY I+    +
Sbjct: 96  GAQWKTSHDEPVSFKRSVMKKELQVWLHFVAARLLSSTHISDVTKDRAVLIYAIVAHKSI 155

Query: 80  DVGRIIAPQIRGLFFKPRGQLFFPFLVTRMCA 112
           DVG++I+  I       R  + FP L+T +CA
Sbjct: 156 DVGKVISHAILHTGRTKRDGIGFPSLITALCA 187

The following BLAST results are available for this feature:

BLAST of Cla002661 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RBS1_9ROSA	1.2e-10	28.66	Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1	[more]
W9QTD9_9ROSA	4.7e-10	29.71	Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1	[more]
W9S7D3_9ROSA	4.0e-09	29.13	Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1	[more]
A0A0A0LAN0_CUCSA	2.2e-07	35.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1	[more]
A0A061F2U9_THECC	1.4e-06	33.70	Uncharacterized protein OS=Theobroma cacao GN=TCM_024087 PE=4 SV=1	[more]

BLAST of Cla002661 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703082781\|ref\|XP_010092041.1\|	1.8e-10	28.66	hypothetical protein L484_000844 [Morus notabilis]	[more]
gi\|703087370\|ref\|XP_010093253.1\|	6.7e-10	29.71	hypothetical protein L484_022412 [Morus notabilis]	[more]
gi\|703121924\|ref\|XP_010102456.1\|	5.7e-09	29.13	hypothetical protein L484_006967 [Morus notabilis]	[more]
gi\|700202594\|gb\|KGN57727.1\|	3.1e-07	35.42	hypothetical protein Csa_3G263250 [Cucumis sativus]	[more]
gi\|590634332\|ref\|XP_007028347.1\|	2.0e-06	33.70	Uncharacterized protein TCM_024087 [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002661	Cla002661.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002661	Melon (DHL92) v3.6.1	medwmB261
Cla002661	Watermelon (97103) v2	wmwmbB126
Cla002661	Cucumber (Gy14) v1	cgywmB713
Cla002661	Melon (DHL92) v3.5.1	mewmB270
Cla002661	Watermelon (Charleston Gray)	wcgwmB225
Cla002661	Watermelon (Charleston Gray)	wcgwmB231
Cla002661	Cucumber (Chinese Long) v2	cuwmB018
Cla002661	Cucumber (Gy14) v2	cgybwmB021