Cla002570 (gene) Watermelon (97103) v1

Overview
NameCla002570
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 3508871 .. 3509065 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAAAAGTGGCTTCTCCCGTCAAAACTGTATTGTCACGGTTTCGCAGGAGATAGCGCCCAAGAAGGGCAATGTTAGGATCTTTCTAGATTGGCCATGGAGACAATATTCAACTATTGTGTTCATTGGAGTCATTTTTTGGATGACTTTGTGGAATTGGAGGGATGGTTGGAGTTGGAAGAGGTACCAGTAG

mRNA sequence

ATGTCCAAAAGTGGCTTCTCCCGTCAAAACTGTATTGTCACGGTTTCGCAGGAGATAGCGCCCAAGAAGGGCAATGTTAGGATCTTTCTAGATTGGCCATGGAGACAATATTCAACTATTGTGTTCATTGGAGTCATTTTTTGGATGACTTTGTGGAATTGGAGGGATGGTTGGAGTTGGAAGAGGTACCAGTAG

Coding sequence (CDS)

ATGTCCAAAAGTGGCTTCTCCCGTCAAAACTGTATTGTCACGGTTTCGCAGGAGATAGCGCCCAAGAAGGGCAATGTTAGGATCTTTCTAGATTGGCCATGGAGACAATATTCAACTATTGTGTTCATTGGAGTCATTTTTTGGATGACTTTGTGGAATTGGAGGGATGGTTGGAGTTGGAAGAGGTACCAGTAG

Protein sequence

MSKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTIVFIGVIFWMTLWNWRDGWSWKRYQ
Homology
[Close]
BLAST of Cla002570 vs. TrEMBL
Match: A0A0A0LR14_CUCSA (Pectinesterase OS=Cucumis sativus GN=Csa_1G049450 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.7e-06
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 

Query: 2   SKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTIVFI 44
           S SGFS QNC VTVS+EI+  K NV++FL  PW+QYS +VF+
Sbjct: 212 SVSGFSFQNCTVTVSREISSNKQNVKVFLGRPWKQYSKVVFM 253

[Close]
BLAST of Cla002570 vs. TrEMBL
Match: A0A0A0KQN0_CUCSA (Pectinesterase OS=Cucumis sativus GN=Csa_5G488750 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.7e-06
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 1 

Query: 2  SKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTIVFI 44
          S SGF  QNC VTVS EIAP K NV +FL  PWR YS +VFI
Sbjct: 45 SLSGFIFQNCNVTVSPEIAPSKDNVTVFLGRPWRMYSMVVFI 86

[Close]
BLAST of Cla002570 vs. NCBI nr
Match: gi|659068775|ref|XP_008446163.1| (PREDICTED: probable pectinesterase/pectinesterase inhibitor 39 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 1 

Query: 3   KSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTIVFI 44
           +SGFS QNC VTVS EI   K NV+I+LD PWRQYS +VF+
Sbjct: 186 ESGFSFQNCTVTVSSEIVASKANVKIYLDRPWRQYSRVVFM 226

[Close]
BLAST of Cla002570 vs. NCBI nr
Match: gi|659068777|ref|XP_008446175.1| (PREDICTED: pectinesterase 2-like [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 4.8e-06
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1 

Query: 4   SGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTIVFI 44
           SGFS QNC VTVS EIA  K NV+I+L  PWRQYS +VF+
Sbjct: 176 SGFSFQNCTVTVSSEIAVNKANVKIYLGRPWRQYSKVVFM 215

[Close]
BLAST of Cla002570 vs. NCBI nr
Match: gi|659131231|ref|XP_008465578.1| (PREDICTED: pectinesterase 2-like, partial [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 6.3e-06
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 1 

Query: 2   SKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTIVFI 44
           S SGFS QNC VTVS EI+  K NV++FL  PWRQYS +VF+
Sbjct: 103 SISGFSFQNCTVTVSPEISSNKQNVKVFLGRPWRQYSNVVFM 144

[Close]
BLAST of Cla002570 vs. NCBI nr
Match: gi|700196022|gb|KGN51199.1| (hypothetical protein Csa_5G488750 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 8.2e-06
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 1 

Query: 2  SKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTIVFI 44
          S SGF  QNC VTVS EIAP K NV +FL  PWR YS +VFI
Sbjct: 45 SLSGFIFQNCNVTVSPEIAPSKDNVTVFLGRPWRMYSMVVFI 86

[Close]
BLAST of Cla002570 vs. NCBI nr
Match: gi|778708551|ref|XP_011656233.1| (PREDICTED: probable pectinesterase/pectinesterase inhibitor 39 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 8.2e-06
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 1 

Query: 2   SKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTIVFI 44
           S SGF  QNC VTVS EIAP K NV +FL  PWR YS +VFI
Sbjct: 214 SLSGFIFQNCNVTVSPEIAPSKDNVTVFLGRPWRMYSMVVFI 255

The following BLAST results are available for this feature:
BLAST of Cla002570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LR14_CUCSA5.7e-0661.90Pectinesterase OS=Cucumis sativus GN=Csa_1G049450 PE=4 SV=1[more]
A0A0A0KQN0_CUCSA5.7e-0666.67Pectinesterase OS=Cucumis sativus GN=Csa_5G488750 PE=4 SV=1[more]
BLAST of Cla002570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659068775|ref|XP_008446163.1|1.3e-0665.85PREDICTED: probable pectinesterase/pectinesterase inhibitor 39 [Cucumis melo][more]
gi|659068777|ref|XP_008446175.1|4.8e-0667.50PREDICTED: pectinesterase 2-like [Cucumis melo][more]
gi|659131231|ref|XP_008465578.1|6.3e-0664.29PREDICTED: pectinesterase 2-like, partial [Cucumis melo][more]
gi|700196022|gb|KGN51199.1|8.2e-0666.67hypothetical protein Csa_5G488750 [Cucumis sativus][more]
gi|778708551|ref|XP_011656233.1|8.2e-0666.67PREDICTED: probable pectinesterase/pectinesterase inhibitor 39 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000070Pectinesterase_cat
Vocabulary: Cellular Component
TermDefinition
GO:0005618cell wall
Vocabulary: Molecular Function
TermDefinition
GO:0030599pectinesterase activity
Vocabulary: Biological Process
TermDefinition
GO:0042545cell wall modification
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042545 cell wall modification
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
cellular_component GO:0005618 cell wall
molecular_function GO:0030599 pectinesterase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002570Cla002570.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000070Pectinesterase, catalyticPFAMPF01095Pectinesterasecoord: 3..46
score: 9.