Cla002542 (gene) Watermelon (97103) v1

Overview
NameCla002542
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 17259728 .. 17260087 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTACTCATATGTCAAAGAAATTTTTGACAGAACTTCATGGAATACTAATGAGTGGGTGGACGACGGATATGGATTTCGCTCCACCAATAGAAGGCAAACGCAAGCTGGAATGCTTGAAGCTGATGCTGCCACCAATCTCTCAACGCAGATGACAACAATGATATCTCTGCTGAAGACGATAGGCTTGAATAATCAACGTAGATCAGTTGCTGGGATGAACGCGATGAATCCGACAGCGTCTGTAAGCTGTCCACAGTGTGGTGCAGGGCACTTGTATGACATGTGTCCCTACAACCTCCAGTCTATCTGCAGTGTTCAAAAGTTACTATGCGTTGAAAGTGTCACCATGCGCTGA

mRNA sequence

ATGACTTACTCATATGTCAAAGAAATTTTTGACAGAACTTCATGGAATACTAATGAGTGGGTGGACGACGGATATGGATTTCGCTCCACCAATAGAAGGCAAACGCAAGCTGGAATGCTTGAAGCTGATGCTGCCACCAATCTCTCAACGCAGATGACAACAATGATATCTCTGCTGAAGACGATAGGCTTGAATAATCAACGTAGATCAGTTGCTGGGATGAACGCGATGAATCCGACAGCGTCTGTAAGCTGTCCACAGTGTGGTGCAGGGCACTTGTATGACATGTGTCCCTACAACCTCCAGTCTATCTGCAGTGTTCAAAAGTTACTATGCGTTGAAAGTGTCACCATGCGCTGA

Coding sequence (CDS)

ATGACTTACTCATATGTCAAAGAAATTTTTGACAGAACTTCATGGAATACTAATGAGTGGGTGGACGACGGATATGGATTTCGCTCCACCAATAGAAGGCAAACGCAAGCTGGAATGCTTGAAGCTGATGCTGCCACCAATCTCTCAACGCAGATGACAACAATGATATCTCTGCTGAAGACGATAGGCTTGAATAATCAACGTAGATCAGTTGCTGGGATGAACGCGATGAATCCGACAGCGTCTGTAAGCTGTCCACAGTGTGGTGCAGGGCACTTGTATGACATGTGTCCCTACAACCTCCAGTCTATCTGCAGTGTTCAAAAGTTACTATGCGTTGAAAGTGTCACCATGCGCTGA

Protein sequence

MTYSYVKEIFDRTSWNTNEWVDDGYGFRSTNRRQTQAGMLEADAATNLSTQMTTMISLLKTIGLNNQRRSVAGMNAMNPTASVSCPQCGAGHLYDMCPYNLQSICSVQKLLCVESVTMR
Homology
[Close]
BLAST of Cla002542 vs. TrEMBL
Match: U5CUI2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-06
Identity = 34/104 (32.69%), Postives = 56/104 (53.85%), Query Frame = 1 

Query: 2   TYSYVKEIFDRTSWNTNEWVDDGYGFRSTNRRQTQAGMLEADAATNLSTQMTTMISLLKT 61
           +Y+   EI +  + N  +W +     R+   R+  AG+LE DA T L+ QM +M ++LK 
Sbjct: 211 SYNEAFEILETIASNNYQWSNT----RAPTSRKV-AGVLEVDAITALTAQMASMTNVLKN 270

Query: 62  IGLNNQRRSVAGMNAMNPTASVSCPQCGAGHLYDMCPYNLQSIC 106
           + + N +       A   +  VSC  CG GH+++ CP N +S+C
Sbjct: 271 LSIGNAKNIQPA--AAIQSDDVSCVFCGEGHVFEKCPSNPESVC 307

[Close]
BLAST of Cla002542 vs. NCBI nr
Match: gi|548830333|gb|ERM93404.1| (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])

HSP 1 Score: 59.7 bits (143), Expect = 4.0e-06
Identity = 34/104 (32.69%), Postives = 56/104 (53.85%), Query Frame = 1 

Query: 2   TYSYVKEIFDRTSWNTNEWVDDGYGFRSTNRRQTQAGMLEADAATNLSTQMTTMISLLKT 61
           +Y+   EI +  + N  +W +     R+   R+  AG+LE DA T L+ QM +M ++LK 
Sbjct: 211 SYNEAFEILETIASNNYQWSNT----RAPTSRKV-AGVLEVDAITALTAQMASMTNVLKN 270

Query: 62  IGLNNQRRSVAGMNAMNPTASVSCPQCGAGHLYDMCPYNLQSIC 106
           + + N +       A   +  VSC  CG GH+++ CP N +S+C
Sbjct: 271 LSIGNAKNIQPA--AAIQSDDVSCVFCGEGHVFEKCPSNPESVC 307

The following BLAST results are available for this feature:
BLAST of Cla002542 vs. TrEMBL
Match NameE-valueIdentityDescription
U5CUI2_AMBTC2.8e-0632.69Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=... [more]
BLAST of Cla002542 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|548830333|gb|ERM93404.1|4.0e-0632.69hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002542Cla002542.1mRNA