Cla002520 (gene) Watermelon (97103) v1

Overview
NameCla002520
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionP-loop containing nucleoside triphosphate hydrolase-like protein (AHRD V1 **-- Q8L607_ARATH)
LocationChr4 : 11702322 .. 11703177 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCTTCAACTTCACGTTGGAGTCCCCGCAAAATCAGGTAAAAAATAACCTACTTGGATATCTTCAACAATTCTTATTCAACCGATTGACTCCTAGAGTGTCTGTGGCTTCCTATGCGCCACGGGATTTTATTGAATAGTAGTTTACAATGGGAGGAAGGGAGTTCCTAGTCTAAATAGTTCACAAGAAACAGATGAAGACGTTAATTGTTGCTCTCTGAACAATAAAAGAGGATTTTATTGAATAGTAGTGAGGGATCTTATTTTACTTGTTTGGAGGCCGTTTTCAAAGTTTGCCTCCTCTTTTGTGGGTTGTCTTTTTTGGAATCCTTTGGTTTTTCTAATGAAAGATTGGTTACTTATCAAAATATATATATACAGACACACATAGATATATATCTTATCCCCTCTACCATCTGGGATTCTCATGATCTTCATTTCTCGAGACCGTTATTTGACATATGAGGTGATCAAGTTATTTTGTCCATAATGGCTTGCTTTTTATATAACCTCACTTTCATTGCACTTTCTTTCCTCTCAATGTTTGTGGGTTTATAAACCAAAAAGGAAACCTGTGTATACTTATTTTCTGATTCATTTGTTCAGGATCTTGTAACAGAAGTTCAATGCTCTCTGTACACAACTCTGTCAGAATTCGACGGTAACGTGGAAGATGAGAATGATTTAGAAAGTCTTATAGAAGTGCAGTTTGAAGCATTGCAGAAAGCAATGAAGATACCTCATAAGGCAGCGGAAGCTCGTTTGAAAGTATCAAAGAAACTACTTACTCTATTCAGAGCAGGTAAGCTTGGTCCATTCATCCTTGATGATGTCCCTATCACAAAAAATTCTTAG

mRNA sequence

ATGATCTTCAACTTCACGTTGGAGTCCCCGCAAAATCAGGATCTTGTAACAGAAGTTCAATGCTCTCTGTACACAACTCTGTCAGAATTCGACGGTAACGTGGAAGATGAGAATGATTTAGAAAGTCTTATAGAAGTGCAGTTTGAAGCATTGCAGAAAGCAATGAAGATACCTCATAAGGCAGCGGAAGCTCGTTTGAAAGTATCAAAGAAACTACTTACTCTATTCAGAGCAGGTAAGCTTGGTCCATTCATCCTTGATGATGTCCCTATCACAAAAAATTCTTAG

Coding sequence (CDS)

ATGATCTTCAACTTCACGTTGGAGTCCCCGCAAAATCAGGATCTTGTAACAGAAGTTCAATGCTCTCTGTACACAACTCTGTCAGAATTCGACGGTAACGTGGAAGATGAGAATGATTTAGAAAGTCTTATAGAAGTGCAGTTTGAAGCATTGCAGAAAGCAATGAAGATACCTCATAAGGCAGCGGAAGCTCGTTTGAAAGTATCAAAGAAACTACTTACTCTATTCAGAGCAGGTAAGCTTGGTCCATTCATCCTTGATGATGTCCCTATCACAAAAAATTCTTAG

Protein sequence

MIFNFTLESPQNQDLVTEVQCSLYTTLSEFDGNVEDENDLESLIEVQFEALQKAMKIPHKAAEARLKVSKKLLTLFRAGKLGPFILDDVPITKNS
Homology
[Close]
BLAST of Cla002520 vs. Swiss-Prot
Match: SIN2_ARATH (Short integuments 2, mitochondrial OS=Arabidopsis thaliana GN=SIN2 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.3e-28
Identity = 62/80 (77.50%), Postives = 68/80 (85.00%), Query Frame = 1 

Query: 14  DLVTEVQCSLYTTLSEFDGNVEDENDLESLIEVQFEALQKAMKIPHKAAEARLKVSKKLL 73
           D+++EVQ SLY TLSEFDG+ EDENDLE LIE QFE LQKA+KIPHKA+EARL VSKK L
Sbjct: 295 DMISEVQRSLYITLSEFDGDTEDENDLECLIEQQFEVLQKALKIPHKASEARLMVSKKFL 354

Query: 74  TLFRAGKLGPFILDDVPITK 94
           TLFR G+LGPFILDDVP T+
Sbjct: 355 TLFRTGRLGPFILDDVPETE 374

[Close]
BLAST of Cla002520 vs. Swiss-Prot
Match: DGP2_ARATH (DAR GTPase 2, mitochondrial OS=Arabidopsis thaliana GN=DGP2 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-12
Identity = 35/76 (46.05%), Postives = 53/76 (69.74%), Query Frame = 1 

Query: 15  LVTEVQCSLYTTLSEFDGNVEDENDLESLIEVQFEALQKAMKIPHKAAE-ARLKVSKKLL 74
           +V +V+  LY T+S FDGN+EDE  + +LIE QF AL+  +++P +A+E A L+V+ K+L
Sbjct: 292 IVYDVRRVLYETISAFDGNLEDEISMGNLIETQFAALRSVLRVPEEASEFADLRVASKIL 351

Query: 75  TLFRAGKLGPFILDDV 90
            L+R G+LG + L+ V
Sbjct: 352 NLYRTGRLGHYTLEHV 367

[Close]
BLAST of Cla002520 vs. TrEMBL
Match: A0A0A0KZR0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G168990 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.7e-33
Identity = 76/87 (87.36%), Postives = 80/87 (91.95%), Query Frame = 1 

Query: 9  SPQNQDLVTEVQCSLYTTLSEFDGNVEDENDLESLIEVQFEALQKAMKIPHKAAEARLKV 68
          S +  DLVTEVQC+LYTTLSEFDGNVEDEN LESLIEVQFEALQKAMK+ HKAAEARL+V
Sbjct: 10 SDETSDLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRV 69

Query: 69 SKKLLTLFRAGKLGPFILDDVPITKNS 96
          SKKLLTLFRAGKLG FILDDVPITK S
Sbjct: 70 SKKLLTLFRAGKLGQFILDDVPITKVS 96

[Close]
BLAST of Cla002520 vs. TrEMBL
Match: F6HKV4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08770 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-28
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 1 

Query: 13  QDLVTEVQCSLYTTLSEFDGNVEDENDLESLIEVQFEALQKAMKIPHKAAEARLKVSKKL 72
           +DLVTEVQC+L+ TLSEF+GN+E+ENDLESLIE QFE LQKAMKIPHKA+EAR  VSKKL
Sbjct: 292 EDLVTEVQCALHVTLSEFNGNLEEENDLESLIEQQFEKLQKAMKIPHKASEARTMVSKKL 351

Query: 73  LTLFRAGKLGPFILDDVPITKN 95
           LTLFR GKLGPFILDDVP + N
Sbjct: 352 LTLFRTGKLGPFILDDVPDSPN 373

[Close]
BLAST of Cla002520 vs. TrEMBL
Match: M5VVZ7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007169mg PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.9e-27
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 1 

Query: 13  QDLVTEVQCSLYTTLSEFDGNVEDENDLESLIEVQFEALQKAMKIPHKAAEARLKVSKKL 72
           +DLVTEVQC+LY+TLSEF+GN+EDE+DLE LIE QFEALQKA+KIP+K  EARL VSKK 
Sbjct: 296 EDLVTEVQCALYSTLSEFNGNMEDESDLEVLIEQQFEALQKALKIPNKGCEARLMVSKKF 355

Query: 73  LTLFRAGKLGPFILDDVP 91
           LTLFR GKLGPFILDDVP
Sbjct: 356 LTLFRTGKLGPFILDDVP 373

[Close]
BLAST of Cla002520 vs. TrEMBL
Match: B9H9S8_POPTR (GTP-binding family protein OS=Populus trichocarpa GN=POPTR_0006s04750g PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.1e-27
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 1 

Query: 13  QDLVTEVQCSLYTTLSEFDGNVEDENDLESLIEVQFEALQKAMKIPHKAAEARLKVSKKL 72
           ++LVTEVQC++Y TL+EF+GNVEDENDLE+LIE QFE LQKA+KIPHKA+EARL VSKK 
Sbjct: 293 ENLVTEVQCAMYKTLAEFNGNVEDENDLENLIEQQFEVLQKALKIPHKASEARLMVSKKF 352

Query: 73  LTLFRAGKLGPFILDDVPIT 93
           LTLFR GKLG FILDDVP T
Sbjct: 353 LTLFRTGKLGCFILDDVPET 372

[Close]
BLAST of Cla002520 vs. TrEMBL
Match: V4MJS5_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10016807mg PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.7e-27
Identity = 63/81 (77.78%), Postives = 72/81 (88.89%), Query Frame = 1 

Query: 14  DLVTEVQCSLYTTLSEFDGNVEDENDLESLIEVQFEALQKAMKIPHKAAEARLKVSKKLL 73
           D+++EVQ SLYTTLSEFDGN EDENDLE LIE QFE LQKA+KIP+KA+EARL VSKK L
Sbjct: 293 DMISEVQRSLYTTLSEFDGNTEDENDLECLIEQQFEVLQKALKIPNKASEARLMVSKKFL 352

Query: 74  TLFRAGKLGPFILDDVPITKN 95
           TLFR G+LGPFILDDVP T++
Sbjct: 353 TLFRTGRLGPFILDDVPETES 373

[Close]
BLAST of Cla002520 vs. NCBI nr
Match: gi|700198699|gb|KGN53857.1| (hypothetical protein Csa_4G168990 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 5.3e-33
Identity = 76/87 (87.36%), Postives = 80/87 (91.95%), Query Frame = 1 

Query: 9  SPQNQDLVTEVQCSLYTTLSEFDGNVEDENDLESLIEVQFEALQKAMKIPHKAAEARLKV 68
          S +  DLVTEVQC+LYTTLSEFDGNVEDEN LESLIEVQFEALQKAMK+ HKAAEARL+V
Sbjct: 10 SDETSDLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRV 69

Query: 69 SKKLLTLFRAGKLGPFILDDVPITKNS 96
          SKKLLTLFRAGKLG FILDDVPITK S
Sbjct: 70 SKKLLTLFRAGKLGQFILDDVPITKVS 96

[Close]
BLAST of Cla002520 vs. NCBI nr
Match: gi|778692270|ref|XP_011653431.1| (PREDICTED: mitochondrial GTPase 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-32
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 1 

Query: 13  QDLVTEVQCSLYTTLSEFDGNVEDENDLESLIEVQFEALQKAMKIPHKAAEARLKVSKKL 72
           +DLVTEVQC+LYTTLSEFDGNVEDEN LESLIEVQFEALQKAMK+ HKAAEARL+VSKKL
Sbjct: 259 EDLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKL 318

Query: 73  LTLFRAGKLGPFILDDVPITKNS 96
           LTLFRAGKLG FILDDVPITK S
Sbjct: 319 LTLFRAGKLGQFILDDVPITKVS 341

[Close]
BLAST of Cla002520 vs. NCBI nr
Match: gi|778692268|ref|XP_004149387.2| (PREDICTED: mitochondrial ribosome-associated GTPase 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-32
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 1 

Query: 13  QDLVTEVQCSLYTTLSEFDGNVEDENDLESLIEVQFEALQKAMKIPHKAAEARLKVSKKL 72
           +DLVTEVQC+LYTTLSEFDGNVEDEN LESLIEVQFEALQKAMK+ HKAAEARL+VSKKL
Sbjct: 308 EDLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKL 367

Query: 73  LTLFRAGKLGPFILDDVPITKNS 96
           LTLFRAGKLG FILDDVPITK S
Sbjct: 368 LTLFRAGKLGQFILDDVPITKVS 390

[Close]
BLAST of Cla002520 vs. NCBI nr
Match: gi|659121629|ref|XP_008460756.1| (PREDICTED: mitochondrial GTPase 1 isoform X1 [Cucumis melo])

HSP 1 Score: 145.2 bits (365), Expect = 5.8e-32
Identity = 74/83 (89.16%), Postives = 78/83 (93.98%), Query Frame = 1 

Query: 13  QDLVTEVQCSLYTTLSEFDGNVEDENDLESLIEVQFEALQKAMKIPHKAAEARLKVSKKL 72
           +DLVTEVQC+LYTTLSEFDGNVEDEN LESLIEVQFEALQKAMK+ H AAEARL+VSKKL
Sbjct: 293 EDLVTEVQCALYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHMAAEARLRVSKKL 352

Query: 73  LTLFRAGKLGPFILDDVPITKNS 96
           LTLFRAGKLG FILDDVPITK S
Sbjct: 353 LTLFRAGKLGQFILDDVPITKIS 375

[Close]
BLAST of Cla002520 vs. NCBI nr
Match: gi|659121631|ref|XP_008460757.1| (PREDICTED: mitochondrial GTPase 1 isoform X2 [Cucumis melo])

HSP 1 Score: 145.2 bits (365), Expect = 5.8e-32
Identity = 74/83 (89.16%), Postives = 78/83 (93.98%), Query Frame = 1 

Query: 13  QDLVTEVQCSLYTTLSEFDGNVEDENDLESLIEVQFEALQKAMKIPHKAAEARLKVSKKL 72
           +DLVTEVQC+LYTTLSEFDGNVEDEN LESLIEVQFEALQKAMK+ H AAEARL+VSKKL
Sbjct: 244 EDLVTEVQCALYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHMAAEARLRVSKKL 303

Query: 73  LTLFRAGKLGPFILDDVPITKNS 96
           LTLFRAGKLG FILDDVPITK S
Sbjct: 304 LTLFRAGKLGQFILDDVPITKIS 326

The following BLAST results are available for this feature:
BLAST of Cla002520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SIN2_ARATH2.3e-2877.50Short integuments 2, mitochondrial OS=Arabidopsis thaliana GN=SIN2 PE=1 SV=1[more]
DGP2_ARATH6.7e-1246.05DAR GTPase 2, mitochondrial OS=Arabidopsis thaliana GN=DGP2 PE=3 SV=1[more]
BLAST of Cla002520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZR0_CUCSA3.7e-3387.36Uncharacterized protein OS=Cucumis sativus GN=Csa_4G168990 PE=4 SV=1[more]
F6HKV4_VITVI1.2e-2880.49Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08770 PE=4 SV=... [more]
M5VVZ7_PRUPE3.9e-2780.77Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007169mg PE=4 SV=1[more]
B9H9S8_POPTR5.1e-2778.75GTP-binding family protein OS=Populus trichocarpa GN=POPTR_0006s04750g PE=4 SV=1[more]
V4MJS5_EUTSA6.7e-2777.78Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10016807mg PE=4 SV=1[more]
BLAST of Cla002520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198699|gb|KGN53857.1|5.3e-3387.36hypothetical protein Csa_4G168990 [Cucumis sativus][more]
gi|778692270|ref|XP_011653431.1|1.2e-3290.36PREDICTED: mitochondrial GTPase 1 isoform X2 [Cucumis sativus][more]
gi|778692268|ref|XP_004149387.2|1.2e-3290.36PREDICTED: mitochondrial ribosome-associated GTPase 1 isoform X1 [Cucumis sativu... [more]
gi|659121629|ref|XP_008460756.1|5.8e-3289.16PREDICTED: mitochondrial GTPase 1 isoform X1 [Cucumis melo][more]
gi|659121631|ref|XP_008460757.1|5.8e-3289.16PREDICTED: mitochondrial GTPase 1 isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0009507 chloroplast
molecular_function GO:0005525 GTP binding
molecular_function GO:0052904 N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity
molecular_function GO:0052903 N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity
molecular_function GO:0052899 N(1),N(12)-diacetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity
molecular_function GO:0052902 spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity
molecular_function GO:0052901 spermine:oxygen oxidoreductase (spermidine-forming) activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU42001watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002520Cla002520.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU42001WMU42001transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla002520Watermelon (Charleston Gray)wcgwmB258
Cla002520Cucurbita pepo (Zucchini)cpewmB085
Cla002520Watermelon (97103) v2wmwmbB295
Cla002520Watermelon (97103) v2wmwmbB296