Cla002491 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002491
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ty3-gypsy retrotransposon protein (AHRD V1 ***- E5GBB0_CUCME)
Location	Chr10 : 13107827 .. 13108225 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCTAAAGCTTCAAGCGACGCTTTTAGAAGACCGATTACTCGCAGTCAAGGAAATACAATTGGACGAGCAACCTATCTTTGAGATCGCGAGAAATATATGGGAGCAGATTTCCAGGGATCCAAAAGCTGGGGTCGTCATTAAAGAAAATCCTACCCTTGACAGGCATACCTCACCTTCTGAACAATCAAGCGAGGAGGCAACCCACCCAAATGTAATGTCAGTCATGATGCCTGACGTGGGAACAAGTGAGGAGAGAATGGCTGAGTTCGAAAAGAAAGTTAACATGCTACTAAAGACAGTTGAAGAAAGGGATTATGAGATTGCATCCCTCAAGAATCATATTGAAAGTCGTGACGCGGCTGAATCAAGTCACACAGACAATCAAGAACAATGA

mRNA sequence

ATGCTCCTAAAGCTTCAAGCGACGCTTTTAGAAGACCGATTACTCGCAGTCAAGGAAATACAATTGGACGAGCAACCTATCTTTGAGATCGCGAGAAATATATGGGAGCAGATTTCCAGGGATCCAAAAGCTGGGGTCGTCATTAAAGAAAATCCTACCCTTGACAGGCATACCTCACCTTCTGAACAATCAAGCGAGGAGGCAACCCACCCAAATGTAATGTCAGTCATGATGCCTGACGTGGGAACAAGTGAGGAGAGAATGGCTGAGTTCGAAAAGAAAGTTAACATGCTACTAAAGACAGTTGAAGAAAGGGATTATGAGATTGCATCCCTCAAGAATCATATTGAAAGTCGTGACGCGGCTGAATCAAGTCACACAGACAATCAAGAACAATGA

Coding sequence (CDS)

ATGCTCCTAAAGCTTCAAGCGACGCTTTTAGAAGACCGATTACTCGCAGTCAAGGAAATACAATTGGACGAGCAACCTATCTTTGAGATCGCGAGAAATATATGGGAGCAGATTTCCAGGGATCCAAAAGCTGGGGTCGTCATTAAAGAAAATCCTACCCTTGACAGGCATACCTCACCTTCTGAACAATCAAGCGAGGAGGCAACCCACCCAAATGTAATGTCAGTCATGATGCCTGACGTGGGAACAAGTGAGGAGAGAATGGCTGAGTTCGAAAAGAAAGTTAACATGCTACTAAAGACAGTTGAAGAAAGGGATTATGAGATTGCATCCCTCAAGAATCATATTGAAAGTCGTGACGCGGCTGAATCAAGTCACACAGACAATCAAGAACAATGA

Protein sequence

MLLKLQATLLEDRLLAVKEIQLDEQPIFEIARNIWEQISRDPKAGVVIKENPTLDRHTSPSEQSSEEATHPNVMSVMMPDVGTSEERMAEFEKKVNMLLKTVEERDYEIASLKNHIESRDAAESSHTDNQEQ

Homology

[Close]

BLAST of Cla002491 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.8e-33
Identity = 73/109 (66.97%), Postives = 89/109 (81.65%), Query Frame = 1


Query: 18  KEIQLDEQPI-FEIARNIWEQISRDPKAGVVIKENPTLDRHTSPSEQSSEEATHPNVMSV 77
           +EIQ  E  + FE+A+NIWEQIS+ PK G++IKENP +D+H S SE S+EEA  PN+MSV
Sbjct: 25  REIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENPAIDKHNSLSEHSNEEAPQPNIMSV 84

Query: 78  MMPDVGTSEERMAEFEKKVNMLLKTVEERDYEIASLKNHIESRDAAESS 126
           M+ DV TSE RM E EKKVNML+K VEERD++IASLKNHIESRD AES+
Sbjct: 85  MVTDVDTSEARMVELEKKVNMLMKAVEERDFKIASLKNHIESRDTAEST 133

[Close]

BLAST of Cla002491 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.1e-14
Identity = 45/105 (42.86%), Postives = 72/105 (68.57%), Query Frame = 1


Query: 23  DEQPIFEIARNIWEQISRDPKAGVVIKENPTLDRHTSPSEQSSEEATHPNVMSVMMPDVG 82
           +++  F + +   EQ+    K G++I++NP  +  T P+   S++ +H  V+SVMM DV 
Sbjct: 3   EQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNST-PTSNLSDKESHLEVVSVMMIDV- 62

Query: 83  TSEERMAEFEKKVNMLLKTVEERDYEIASLKNHIESRDAAESSHT 128
           T+E  MAE EKK+N L+K VEERD+EIA+LK+ +++ ++AESS T
Sbjct: 63  TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQT 105

[Close]

BLAST of Cla002491 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.3e-14
Identity = 42/105 (40.00%), Postives = 71/105 (67.62%), Query Frame = 1


Query: 23  DEQPIFEIARNIWEQISRDPKAGVVIKENPTLDRHTSPSEQSSEEATHPNVMSVMMPDVG 82
           +++  F + +   EQ+   PK G++I++NP  +  T P+   S++A+H  V+SVMM DV 
Sbjct: 34  EQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNST-PASNLSDKASHLEVVSVMMVDV- 93

Query: 83  TSEERMAEFEKKVNMLLKTVEERDYEIASLKNHIESRDAAESSHT 128
           T+E  + E E+K+N L+K +EERD+EIA+LK+ +++ +  ESS T
Sbjct: 94  TAEATVTEMERKINFLMKVIEERDHEIAALKDQMKACETGESSQT 136

[Close]

BLAST of Cla002491 vs. TrEMBL
Match: E5GCM2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 1


Query: 30  IARNIWEQISRDPKAGVVIKENPTLDRHTSPSEQSSEEATHPNVMSVMMPDVGTSEERMA 89
           +A+  WEQ+   PK G++IKENP  +  T P+   SE+ +H  V+S+MM DV T E  M 
Sbjct: 39  LAKKSWEQLMESPKCGIIIKENPLFEDST-PASNLSEKESHLEVVSIMMADV-TVEAVMV 98

Query: 90  EFEKKVNMLLKTVEERDYEIASL 113
           E E K+N L+K VEERDY I  L
Sbjct: 99  EMEMKINFLMKVVEERDYGITVL 119

[Close]

BLAST of Cla002491 vs. TrEMBL
Match: E5GCE3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.6e-10
Identity = 40/106 (37.74%), Postives = 66/106 (62.26%), Query Frame = 1


Query: 18  KEIQLDEQPIFEIARNIWEQISRDPKAGVVIKENPTLDRHTSPSEQSSEEATHPNVMSVM 77
           + IQ  EQ    + +  WEQ+   PK G+ I+ENP  +  T P+   S++ +H  V+SV+
Sbjct: 28  RSIQEQEQSSV-LKKKSWEQLIESPKGGINIRENPLFNNST-PASNLSDKESHLEVVSVI 87

Query: 78  MPDVGTSEERMAEFEKKVNMLLKTVEERDYEIASLKNHIESRDAAE 124
           M  V T+E  M E E+K+N L+K V++RD+EI +L++ +++   AE
Sbjct: 88  MAAV-TAETTMVEMERKINFLMKAVKDRDHEITALEDQMKACVTAE 130

[Close]

BLAST of Cla002491 vs. NCBI nr
Match: gi|307135887|gb|ADN33752.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 150.2 bits (378), Expect = 2.5e-33
Identity = 73/109 (66.97%), Postives = 89/109 (81.65%), Query Frame = 1


Query: 18  KEIQLDEQPI-FEIARNIWEQISRDPKAGVVIKENPTLDRHTSPSEQSSEEATHPNVMSV 77
           +EIQ  E  + FE+A+NIWEQIS+ PK G++IKENP +D+H S SE S+EEA  PN+MSV
Sbjct: 25  REIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENPAIDKHNSLSEHSNEEAPQPNIMSV 84

Query: 78  MMPDVGTSEERMAEFEKKVNMLLKTVEERDYEIASLKNHIESRDAAESS 126
           M+ DV TSE RM E EKKVNML+K VEERD++IASLKNHIESRD AES+
Sbjct: 85  MVTDVDTSEARMVELEKKVNMLMKAVEERDFKIASLKNHIESRDTAEST 133

[Close]

BLAST of Cla002491 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 85.9 bits (211), Expect = 5.8e-14
Identity = 45/105 (42.86%), Postives = 72/105 (68.57%), Query Frame = 1


Query: 23  DEQPIFEIARNIWEQISRDPKAGVVIKENPTLDRHTSPSEQSSEEATHPNVMSVMMPDVG 82
           +++  F + +   EQ+    K G++I++NP  +  T P+   S++ +H  V+SVMM DV 
Sbjct: 3   EQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNST-PTSNLSDKESHLEVVSVMMIDV- 62

Query: 83  TSEERMAEFEKKVNMLLKTVEERDYEIASLKNHIESRDAAESSHT 128
           T+E  MAE EKK+N L+K VEERD+EIA+LK+ +++ ++AESS T
Sbjct: 63  TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQT 105

[Close]

BLAST of Cla002491 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 85.5 bits (210), Expect = 7.6e-14
Identity = 42/105 (40.00%), Postives = 71/105 (67.62%), Query Frame = 1


Query: 23  DEQPIFEIARNIWEQISRDPKAGVVIKENPTLDRHTSPSEQSSEEATHPNVMSVMMPDVG 82
           +++  F + +   EQ+   PK G++I++NP  +  T P+   S++A+H  V+SVMM DV 
Sbjct: 34  EQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNST-PASNLSDKASHLEVVSVMMVDV- 93

Query: 83  TSEERMAEFEKKVNMLLKTVEERDYEIASLKNHIESRDAAESSHT 128
           T+E  + E E+K+N L+K +EERD+EIA+LK+ +++ +  ESS T
Sbjct: 94  TAEATVTEMERKINFLMKVIEERDHEIAALKDQMKACETGESSQT 136

[Close]

BLAST of Cla002491 vs. NCBI nr
Match: gi|659118742|ref|XP_008459280.1| (PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-12
Identity = 40/96 (41.67%), Postives = 65/96 (67.71%), Query Frame = 1


Query: 32  RNIWEQISRDPKAGVVIKENPTLDRHTSPSEQSSEEATHPNVMSVMMPDVGTSEERMAEF 91
           ++I +Q+   PKAG+ IKENP  D   S   +  +EA HP+VMSVMM D+ T+E  M E 
Sbjct: 2   QSILKQLMLSPKAGIFIKENPLYDNFDSALSKLKKEA-HPDVMSVMMVDI-TAEAAMTEM 61

Query: 92  EKKVNMLLKTVEERDYEIASLKNHIESRDAAESSHT 128
           E+K+N+++K V+E+D++I +L+  ++  +  +SS T
Sbjct: 62  ERKINLVMKVVKEQDHKITALREQMQIHETTKSSQT 95

[Close]

BLAST of Cla002491 vs. NCBI nr
Match: gi|307136413|gb|ADN34221.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-11
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 1


Query: 30  IARNIWEQISRDPKAGVVIKENPTLDRHTSPSEQSSEEATHPNVMSVMMPDVGTSEERMA 89
           +A+  WEQ+   PK G++IKENP  +  T P+   SE+ +H  V+S+MM DV T E  M 
Sbjct: 39  LAKKSWEQLMESPKCGIIIKENPLFEDST-PASNLSEKESHLEVVSIMMADV-TVEAVMV 98

Query: 90  EFEKKVNMLLKTVEERDYEIASL 113
           E E K+N L+K VEERDY I  L
Sbjct: 99  EMEMKINFLMKVVEERDYGITVL 119

The following BLAST results are available for this feature:

BLAST of Cla002491 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBB0_CUCME	1.8e-33	66.97	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GB67_CUCME	4.1e-14	42.86	Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCP6_CUCME	5.3e-14	40.00	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCM2_CUCME	1.4e-11	48.19	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCE3_CUCME	3.6e-10	37.74	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla002491 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135887\|gb\|ADN33752.1\|	2.5e-33	66.97	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|307135838\|gb\|ADN33709.1\|	5.8e-14	42.86	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]
gi\|307136441\|gb\|ADN34247.1\|	7.6e-14	40.00	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659118742\|ref\|XP_008459280.1\|	3.2e-12	41.67	PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo]	[more]
gi\|307136413\|gb\|ADN34221.1\|	2.1e-11	48.19	hypothetical protein [Cucumis melo subsp. melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002491	Cla002491.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002491	Watermelon (97103) v2	wmwmbB051
Cla002491	Cucumber (Gy14) v1	cgywmB714
Cla002491	Cucurbita maxima (Rimu)	cmawmB293
Cla002491	Cucurbita maxima (Rimu)	cmawmB653
Cla002491	Cucurbita maxima (Rimu)	cmawmB665
Cla002491	Cucurbita moschata (Rifu)	cmowmB287
Cla002491	Cucurbita moschata (Rifu)	cmowmB298
Cla002491	Cucurbita moschata (Rifu)	cmowmB658
Cla002491	Cucurbita moschata (Rifu)	cmowmB648
Cla002491	Wild cucumber (PI 183967)	cpiwmB294
Cla002491	Melon (DHL92) v3.5.1	mewmB498
Cla002491	Watermelon (Charleston Gray)	wcgwmB051
Cla002491	Cucumber (Chinese Long) v2	cuwmB293
Cla002491	Cucurbita pepo (Zucchini)	cpewmB204
Cla002491	Cucurbita pepo (Zucchini)	cpewmB215
Cla002491	Cucurbita pepo (Zucchini)	cpewmB382
Cla002491	Cucurbita pepo (Zucchini)	cpewmB391
Cla002491	Bottle gourd (USVL1VR-Ls)	lsiwmB240
Cla002491	Cucumber (Gy14) v2	cgybwmB272
Cla002491	Melon (DHL92) v3.6.1	medwmB484
Cla002491	Silver-seed gourd	carwmB0366
Cla002491	Silver-seed gourd	carwmB0368
Cla002491	Silver-seed gourd	carwmB0872
Cla002491	Cucumber (Chinese Long) v3	cucwmB304