Cla002490 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002490
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ty3-gypsy retrotransposon protein (AHRD V1 ***- E5GCP6_CUCME)
Location	Chr10 : 13099458 .. 13099778 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTCCAAGAAAGTTGCGTCCAACACTCATACCGCAAGCGACACCTACACGGGACCCATCACCTGCAGTCTCTCAAAGGGGATCATGCAAGAGAAGGAACAAAGTAGGATTGTCATCAAAGAAAATCTTTTGTTTGACAACTCTGCTCCTACTTCTGATCAATCCAAGAAAGAATCACATCCTGATGTGATGTCTGTCATGATGACGGATGTAATAGTAGAGACAACCATGACGGAGATGGAAAGAAAAATAAATCTCCTAATGAAAGTTGTCGAGAAGCGAGATCATGAGATCGCTACTTTAAAAGAGCAAATGTAG

mRNA sequence

ATGACCTCCAAGAAAGTTGCGTCCAACACTCATACCGCAAGCGACACCTACACGGGACCCATCACCTGCAGTCTCTCAAAGGGGATCATGCAAGAGAAGGAACAAAGTAGGATTGTCATCAAAGAAAATCTTTTGTTTGACAACTCTGCTCCTACTTCTGATCAATCCAAGAAAGAATCACATCCTGATGTGATGTCTGTCATGATGACGGATGTAATAGTAGAGACAACCATGACGGAGATGGAAAGAAAAATAAATCTCCTAATGAAAGTTGTCGAGAAGCGAGATCATGAGATCGCTACTTTAAAAGAGCAAATGTAG

Coding sequence (CDS)

ATGACCTCCAAGAAAGTTGCGTCCAACACTCATACCGCAAGCGACACCTACACGGGACCCATCACCTGCAGTCTCTCAAAGGGGATCATGCAAGAGAAGGAACAAAGTAGGATTGTCATCAAAGAAAATCTTTTGTTTGACAACTCTGCTCCTACTTCTGATCAATCCAAGAAAGAATCACATCCTGATGTGATGTCTGTCATGATGACGGATGTAATAGTAGAGACAACCATGACGGAGATGGAAAGAAAAATAAATCTCCTAATGAAAGTTGTCGAGAAGCGAGATCATGAGATCGCTACTTTAAAAGAGCAAATGTAG

Protein sequence

MTSKKVASNTHTASDTYTGPITCSLSKGIMQEKEQSRIVIKENLLFDNSAPTSDQSKKESHPDVMSVMMTDVIVETTMTEMERKINLLMKVVEKRDHEIATLKEQM

Homology

[Close]

BLAST of Cla002490 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-21
Identity = 62/125 (49.60%), Postives = 79/125 (63.20%), Query Frame = 1


Query: 1   MTSKKVASNTHTASDTYTGPITCSLSKGIMQEKEQSR-------------------IVIK 60
           M + K AS +  ASD+Y G +T S  K  MQE+EQ +                   I+I+
Sbjct: 1   MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60

Query: 61  ENLLFDNSAPTSDQSKKESHPDVMSVMMTDVIVETTMTEMERKINLLMKVVEKRDHEIAT 107
           +N LF+NS P S+ S K SH +V+SVMM DV  E T+TEMERKIN LMKV+E+RDHEIA 
Sbjct: 61  DNPLFNNSTPASNLSDKASHLEVVSVMMVDVTAEATVTEMERKINFLMKVIEERDHEIAA 120

[Close]

BLAST of Cla002490 vs. TrEMBL
Match: E5GCE3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.0e-20
Identity = 60/123 (48.78%), Postives = 77/123 (62.60%), Query Frame = 1


Query: 1   MTSKKVASNTHTASDTYTGPITCSLSKGIMQEKEQSRIV-----------------IKEN 60
           M  +KVAS     +D+YTG +T S SK  +QE+EQS ++                 I+EN
Sbjct: 1   MAPRKVASKATVTNDSYTGLVTQSHSKRSIQEQEQSSVLKKKSWEQLIESPKGGINIREN 60

Query: 61  LLFDNSAPTSDQSKKESHPDVMSVMMTDVIVETTMTEMERKINLLMKVVEKRDHEIATLK 107
            LF+NS P S+ S KESH +V+SV+M  V  ETTM EMERKIN LMK V+ RDHEI  L+
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVIMAAVTAETTMVEMERKINFLMKAVKDRDHEITALE 120

[Close]

BLAST of Cla002490 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-17
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 1


Query: 32  EKEQSRIVIKENLLFDNSAPTSDQSKKESHPDVMSVMMTDVIVETTMTEMERKINLLMKV 91
           E  +  I+I++N LF+NS PTS+ S KESH +V+SVMM DV  E TM EME+KIN LMKV
Sbjct: 20  ESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDVTAEATMAEMEKKINFLMKV 79

Query: 92  VEKRDHEIATLKEQM 107
           VE+RDHEIA LK+QM
Sbjct: 80  VEERDHEIAALKDQM 94

[Close]

BLAST of Cla002490 vs. TrEMBL
Match: E5GCM2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.9e-16
Identity = 56/119 (47.06%), Postives = 70/119 (58.82%), Query Frame = 1


Query: 1   MTSKKVASNTHTASDTYTGPITCSLSKGIMQEKEQSR-----------------IVIKEN 60
           M   KVAS     +DTYT  I  S SK   Q++EQ+                  I+IKEN
Sbjct: 1   MALMKVASKAIIINDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKEN 60

Query: 61  LLFDNSAPTSDQSKKESHPDVMSVMMTDVIVETTMTEMERKINLLMKVVEKRDHEIATL 103
            LF++S P S+ S+KESH +V+S+MM DV VE  M EME KIN LMKVVE+RD+ I  L
Sbjct: 61  PLFEDSTPASNLSEKESHLEVVSIMMADVTVEAVMVEMEMKINFLMKVVEERDYGITVL 119

[Close]

BLAST of Cla002490 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-07
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1


Query: 38  IVIKENLLFDNSAPTSDQSKKES-HPDVMSVMMTDVIV-ETTMTEMERKINLLMKVVEKR 97
           I+IKEN   D     S+ S +E+  P++MSVM+TDV   E  M E+E+K+N+LMK VE+R
Sbjct: 54  IIIKENPAIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKKVNMLMKAVEER 113

Query: 98  DHEIATLKEQM 107
           D +IA+LK  +
Sbjct: 114 DFKIASLKNHI 124

[Close]

BLAST of Cla002490 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-21
Identity = 62/125 (49.60%), Postives = 79/125 (63.20%), Query Frame = 1


Query: 1   MTSKKVASNTHTASDTYTGPITCSLSKGIMQEKEQSR-------------------IVIK 60
           M + K AS +  ASD+Y G +T S  K  MQE+EQ +                   I+I+
Sbjct: 1   MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60

Query: 61  ENLLFDNSAPTSDQSKKESHPDVMSVMMTDVIVETTMTEMERKINLLMKVVEKRDHEIAT 107
           +N LF+NS P S+ S K SH +V+SVMM DV  E T+TEMERKIN LMKV+E+RDHEIA 
Sbjct: 61  DNPLFNNSTPASNLSDKASHLEVVSVMMVDVTAEATVTEMERKINFLMKVIEERDHEIAA 120

[Close]

BLAST of Cla002490 vs. NCBI nr
Match: gi|307136319|gb|ADN34142.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 105.9 bits (263), Expect = 4.4e-20
Identity = 60/123 (48.78%), Postives = 77/123 (62.60%), Query Frame = 1


Query: 1   MTSKKVASNTHTASDTYTGPITCSLSKGIMQEKEQSRIV-----------------IKEN 60
           M  +KVAS     +D+YTG +T S SK  +QE+EQS ++                 I+EN
Sbjct: 1   MAPRKVASKATVTNDSYTGLVTQSHSKRSIQEQEQSSVLKKKSWEQLIESPKGGINIREN 60

Query: 61  LLFDNSAPTSDQSKKESHPDVMSVMMTDVIVETTMTEMERKINLLMKVVEKRDHEIATLK 107
            LF+NS P S+ S KESH +V+SV+M  V  ETTM EMERKIN LMK V+ RDHEI  L+
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVIMAAVTAETTMVEMERKINFLMKAVKDRDHEITALE 120

[Close]

BLAST of Cla002490 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 96.3 bits (238), Expect = 3.5e-17
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 1


Query: 32  EKEQSRIVIKENLLFDNSAPTSDQSKKESHPDVMSVMMTDVIVETTMTEMERKINLLMKV 91
           E  +  I+I++N LF+NS PTS+ S KESH +V+SVMM DV  E TM EME+KIN LMKV
Sbjct: 20  ESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDVTAEATMAEMEKKINFLMKV 79

Query: 92  VEKRDHEIATLKEQM 107
           VE+RDHEIA LK+QM
Sbjct: 80  VEERDHEIAALKDQM 94

[Close]

BLAST of Cla002490 vs. NCBI nr
Match: gi|307136413|gb|ADN34221.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 91.7 bits (226), Expect = 8.5e-16
Identity = 56/119 (47.06%), Postives = 70/119 (58.82%), Query Frame = 1


Query: 1   MTSKKVASNTHTASDTYTGPITCSLSKGIMQEKEQSR-----------------IVIKEN 60
           M   KVAS     +DTYT  I  S SK   Q++EQ+                  I+IKEN
Sbjct: 1   MALMKVASKAIIINDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKEN 60

Query: 61  LLFDNSAPTSDQSKKESHPDVMSVMMTDVIVETTMTEMERKINLLMKVVEKRDHEIATL 103
            LF++S P S+ S+KESH +V+S+MM DV VE  M EME KIN LMKVVE+RD+ I  L
Sbjct: 61  PLFEDSTPASNLSEKESHLEVVSIMMADVTVEAVMVEMEMKINFLMKVVEERDYGITVL 119

[Close]

BLAST of Cla002490 vs. NCBI nr
Match: gi|659118742|ref|XP_008459280.1| (PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 5.5e-15
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 1


Query: 38  IVIKENLLFDNSAPTSDQSKKESHPDVMSVMMTDVIVETTMTEMERKINLLMKVVEKRDH 97
           I IKEN L+DN      + KKE+HPDVMSVMM D+  E  MTEMERKINL+MKVV+++DH
Sbjct: 16  IFIKENPLYDNFDSALSKLKKEAHPDVMSVMMVDITAEAAMTEMERKINLVMKVVKEQDH 75

Query: 98  EIATLKEQM 107
           +I  L+EQM
Sbjct: 76  KITALREQM 84

The following BLAST results are available for this feature:

BLAST of Cla002490 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCP6_CUCME	1.2e-21	49.60	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCE3_CUCME	3.0e-20	48.78	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GB67_CUCME	2.4e-17	64.00	Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCM2_CUCME	5.9e-16	47.06	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBB0_CUCME	2.3e-07	47.89	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla002490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136441\|gb\|ADN34247.1\|	1.8e-21	49.60	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|307136319\|gb\|ADN34142.1\|	4.4e-20	48.78	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|307135838\|gb\|ADN33709.1\|	3.5e-17	64.00	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]
gi\|307136413\|gb\|ADN34221.1\|	8.5e-16	47.06	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659118742\|ref\|XP_008459280.1\|	5.5e-15	62.32	PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002490	Cla002490.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002490	Melon (DHL92) v3.6.1	medwmB484
Cla002490	Silver-seed gourd	carwmB0366
Cla002490	Silver-seed gourd	carwmB0368
Cla002490	Silver-seed gourd	carwmB0872
Cla002490	Cucumber (Chinese Long) v3	cucwmB304
Cla002490	Watermelon (97103) v2	wmwmbB051
Cla002490	Cucumber (Gy14) v1	cgywmB714
Cla002490	Cucurbita maxima (Rimu)	cmawmB293
Cla002490	Cucurbita maxima (Rimu)	cmawmB653
Cla002490	Cucurbita maxima (Rimu)	cmawmB665
Cla002490	Cucurbita moschata (Rifu)	cmowmB287
Cla002490	Cucurbita moschata (Rifu)	cmowmB298
Cla002490	Cucurbita moschata (Rifu)	cmowmB658
Cla002490	Cucurbita moschata (Rifu)	cmowmB648
Cla002490	Wild cucumber (PI 183967)	cpiwmB294
Cla002490	Melon (DHL92) v3.5.1	mewmB498
Cla002490	Watermelon (Charleston Gray)	wcgwmB051
Cla002490	Cucumber (Chinese Long) v2	cuwmB293
Cla002490	Cucurbita pepo (Zucchini)	cpewmB204
Cla002490	Cucurbita pepo (Zucchini)	cpewmB215
Cla002490	Cucurbita pepo (Zucchini)	cpewmB382
Cla002490	Cucurbita pepo (Zucchini)	cpewmB391
Cla002490	Bottle gourd (USVL1VR-Ls)	lsiwmB240
Cla002490	Cucumber (Gy14) v2	cgybwmB272