Cla002476 (gene) Watermelon (97103) v1

Overview
NameCla002476
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGypsy-like retrotransposase (AHRD V1 *-*- B0F6T3_CUCSA)
LocationChr10 : 12756860 .. 12757396 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGAGACATTGAAATTTTGAAAGAGAGTTTCACTACACCACTTACCAAGATGGATAAGAGTGGCGTTAAAAAAAATGAGACAGAGGAAGCTAGAGCAACTCTGCCAGAAAAACGAACAAATGATGGTTTCGATCCAAAGGCATATAAGCTACTGGCAAAGGCAGATTATGACTTCACGGCTCATACTGAGTTTAAAACTCTAAAGATATCTGATGAAAGACCTGAACTTTCCCCTACTCAGAGGAAGCTTCAGTTTAAGTTTTATCAGCAAGGCATTAGGAAAGTTGATGCCGACACCAAACCATTTTCAGAAGCTGAATCTCATTTCGCTGATGGAAAGTTCTACATGAAAAGTGATAATATTAGCGAAGTTATATCAACCAAAGTTTCAATGGCCAAAGGCTCCTATAGGCCCGAGCAACGAATGGTTACGATAAAGAAGTTGAGCGAAGTGGATGCTTTCAGCGACCGGGAAACAATGAGTCAATCACCCAAGTCAAGCTTGAAATGTCAAAGAACGAAGGGAGGATAA

mRNA sequence

ATGATTGGAGACATTGAAATTTTGAAAGAGAGTTTCACTACACCACTTACCAAGATGGATAAGAGTGGCGTTAAAAAAAATGAGACAGAGGAAGCTAGAGCAACTCTGCCAGAAAAACGAACAAATGATGGTTTCGATCCAAAGGCATATAAGCTACTGGCAAAGGCAGATTATGACTTCACGGCTCATACTGAGTTTAAAACTCTAAAGATATCTGATGAAAGACCTGAACTTTCCCCTACTCAGAGGAAGCTTCAGTTTAAGTTTTATCAGCAAGGCATTAGGAAAGTTGATGCCGACACCAAACCATTTTCAGAAGCTGAATCTCATTTCGCTGATGGAAAGTTCTACATGAAAAGTGATAATATTAGCGAAGTTATATCAACCAAAGTTTCAATGGCCAAAGGCTCCTATAGGCCCGAGCAACGAATGGTTACGATAAAGAAGTTGAGCGAAGTGGATGCTTTCAGCGACCGGGAAACAATGAGTCAATCACCCAAGTCAAGCTTGAAATGTCAAAGAACGAAGGGAGGATAA

Coding sequence (CDS)

ATGATTGGAGACATTGAAATTTTGAAAGAGAGTTTCACTACACCACTTACCAAGATGGATAAGAGTGGCGTTAAAAAAAATGAGACAGAGGAAGCTAGAGCAACTCTGCCAGAAAAACGAACAAATGATGGTTTCGATCCAAAGGCATATAAGCTACTGGCAAAGGCAGATTATGACTTCACGGCTCATACTGAGTTTAAAACTCTAAAGATATCTGATGAAAGACCTGAACTTTCCCCTACTCAGAGGAAGCTTCAGTTTAAGTTTTATCAGCAAGGCATTAGGAAAGTTGATGCCGACACCAAACCATTTTCAGAAGCTGAATCTCATTTCGCTGATGGAAAGTTCTACATGAAAAGTGATAATATTAGCGAAGTTATATCAACCAAAGTTTCAATGGCCAAAGGCTCCTATAGGCCCGAGCAACGAATGGTTACGATAAAGAAGTTGAGCGAAGTGGATGCTTTCAGCGACCGGGAAACAATGAGTCAATCACCCAAGTCAAGCTTGAAATGTCAAAGAACGAAGGGAGGATAA

Protein sequence

MIGDIEILKESFTTPLTKMDKSGVKKNETEEARATLPEKRTNDGFDPKAYKLLAKADYDFTAHTEFKTLKISDERPELSPTQRKLQFKFYQQGIRKVDADTKPFSEAESHFADGKFYMKSDNISEVISTKVSMAKGSYRPEQRMVTIKKLSEVDAFSDRETMSQSPKSSLKCQRTKGG
Homology
[Close]
BLAST of Cla002476 vs. TrEMBL
Match: A0A0K9RJK8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_065000 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.4e-08
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 1 

Query: 87  FKFYQQGIRKVDADTKPFSEAESHFADGKFYMKSDNISEVISTKVSMAKGSYRPEQRMVT 146
           FK+Y+ G RKV+AD KPFSEAESHFAD KFY       +V+ T+++ + G   P++   T
Sbjct: 290 FKYYRNGERKVNADVKPFSEAESHFADAKFYASQGEPVDVMPTEIA-STGKVMPKKLQST 349

Query: 147 IKKLSEVDAFS-DRETMSQSPKSSLKCQRTK 177
           +++    +A     ET+ +     +  QR K
Sbjct: 350 VEEKPSRNALEPSHETVDEKKTKEIPSQRVK 379

[Close]
BLAST of Cla002476 vs. TrEMBL
Match: A0A0K9RJK8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_065000 PE=4 SV=1)

HSP 1 Score: 40.8 bits (94), Expect = 2.0e+00
Identity = 28/90 (31.11%), Postives = 47/90 (52.22%), Query Frame = 1 

Query: 10  ESFTTPLTKMDKSGVKKNETEEARAT--LPEKRTNDGFDPKAYKLLAKADYDFTAHTEFK 69
           +S T P+ K+    +  + T  +  +   P  R  DGFDP AYKL+  + YDF+      
Sbjct: 387 KSMTLPVHKISDPKILTSPTPNSTKSPETPSSR-KDGFDPVAYKLMENSGYDFSNPKPIG 446

Query: 70  TLKISDERPELSPTQRKLQFKFYQQGIRKV 98
            L + D+   L+ TQ+K+Q +  +  ++KV
Sbjct: 447 KL-VEDKSYGLNKTQQKVQQQGERVWVKKV 474


HSP 2 Score: 66.2 bits (160), Expect = 4.5e-08
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 1 

Query: 87  FKFYQQGIRKVDADTKPFSEAESHFADGKFYMKSDNISEVISTKVSMAKGSYRPEQRMVT 146
           FK+Y+ G RKV+AD KPFSEAESHFAD KFY       EV+ T+++ + G   P++   T
Sbjct: 178 FKYYRNGERKVNADVKPFSEAESHFADAKFYASQGEPVEVMPTEIA-STGKVMPKKLQST 237

Query: 147 IKKLSEVDAFS-DRETMSQSPKSSLKCQRTK 177
           +++    +A     ET+ +     +  QR +
Sbjct: 238 VEEKPSRNALEPSHETVDEKKTKEIPSQRVE 267

[Close]
BLAST of Cla002476 vs. TrEMBL
Match: B0F6T3_CUCSA (Gypsy-like retrotransposase OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.5e-06
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1 

Query: 2  IGDIEILKESFTTPLTKMDKSGVKKNETEEARATLPEKRTNDGFDPKAYKLLAKA 57
          +GDI++LKESFTTPLTK+ K  +K +  EE    LP++R  D FD KA KL+AKA
Sbjct: 38 VGDIKVLKESFTTPLTKIMKQEIKIDLMEE---NLPQRRMKDKFDSKACKLMAKA 89

[Close]
BLAST of Cla002476 vs. NCBI nr
Match: gi|778660504|ref|XP_011656345.1| (PREDICTED: uncharacterized protein LOC105435721 isoform X1 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 3.5e-22
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 1 

Query: 2   IGDIEILKESFTTPLTKMDKSGVKKNETEEARATLPEKRTNDGFDPKAYKLLAKADYDFT 61
           +GDIEI+KESFTTPLTK+ K  VK +  E   A LP++RT DGFDPKAYKL+AKA YDFT
Sbjct: 456 VGDIEIIKESFTTPLTKIAKQEVKVDLVE---ANLPQRRTKDGFDPKAYKLMAKAGYDFT 515

Query: 62  AHTEFKTLKISDERPELSPTQRKL 86
           AHTEFK+L+I D RPELS TQ+KL
Sbjct: 516 AHTEFKSLEIHD-RPELSSTQKKL 535

[Close]
BLAST of Cla002476 vs. NCBI nr
Match: gi|778660504|ref|XP_011656345.1| (PREDICTED: uncharacterized protein LOC105435721 isoform X1 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.8e-10
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 1 

Query: 87  FKFYQQGIRKVDADTKPFSEAESHFADGKFYMKSDNISEVISTKVSMAKGSYRPEQRMVT 146
           FKFYQ G++KV+AD+ PFSEAESHFAD KFY K++NI EV+  +  + KG    +     
Sbjct: 334 FKFYQDGVKKVEADSNPFSEAESHFADAKFYSKNNNILEVLPAETPLTKGEDNSQ----- 393

Query: 147 IKKLSEVDAFSDRETMSQSPKSSLKCQRTKG 178
           +K L+  +      T + S K     + TKG
Sbjct: 394 LKSLATTEPHESARTFN-SGKGETYTRNTKG 418


HSP 2 Score: 100.1 bits (248), Expect = 4.0e-18
Identity = 44/85 (51.76%), Postives = 68/85 (80.00%), Query Frame = 1 

Query: 87  FKFYQQGIRKVDADTKPFSEAESHFADGKFYMKSDNISEVISTKVSMAKGSYRPEQRMVT 146
           FKFY+QGIRKVDA+++PF++AESHFAD KFY KS+++SE+IST+V + KG+++ EQ M+T
Sbjct: 203 FKFYKQGIRKVDAESRPFTKAESHFADAKFYTKSEDVSEIISTEVPVTKGTFKNEQEMIT 262

Query: 147 IKKLSEVDAFSDRETMSQSPKSSLK 172
           IKK ++ DA +  +    + ++ L+
Sbjct: 263 IKKSNKGDALNSPQNGESTTETKLR 287

[Close]
BLAST of Cla002476 vs. NCBI nr
Match: gi|659074577|ref|XP_008437679.1| (PREDICTED: uncharacterized protein LOC103483019 [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-17
Identity = 43/85 (50.59%), Postives = 67/85 (78.82%), Query Frame = 1 

Query: 87  FKFYQQGIRKVDADTKPFSEAESHFADGKFYMKSDNISEVISTKVSMAKGSYRPEQRMVT 146
           FKFY+QGI+KVDAD++PF++AESHFAD KFY KS+++SE+IST+V + KG+++ EQ M+T
Sbjct: 636 FKFYKQGIKKVDADSRPFTKAESHFADAKFYTKSEDVSEIISTEVPVTKGTFKNEQEMIT 695

Query: 147 IKKLSEVDAFSDRETMSQSPKSSLK 172
            KK ++ DA + +     + ++ L+
Sbjct: 696 SKKSNKGDALNSQHNGESTTETKLR 720

[Close]
BLAST of Cla002476 vs. NCBI nr
Match: gi|659074577|ref|XP_008437679.1| (PREDICTED: uncharacterized protein LOC103483019 [Cucumis melo])

HSP 1 Score: 30.8 bits (68), Expect = 3.0e+03
Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = 1 

Query: 2   IGDIEILKESFTTPLTKMDKSGVKK 27
           + + EILKE+FT PL K++K   KK
Sbjct: 764 VKNTEILKENFTAPLAKIEKGEAKK 788


HSP 2 Score: 94.4 bits (233), Expect = 2.2e-16
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 1 

Query: 87  FKFYQQGIRKVDADTKPFSEAESHFADGKFYMKSDNISEVISTKVSMAKGSYRPEQRMVT 146
           FKFY+QG+RK+D DTKPFS+AESHF D KFY K D++SE IS++V +AK +Y+ EQ  +T
Sbjct: 79  FKFYKQGVRKIDTDTKPFSKAESHFVDAKFYTKDDDVSEFISSEVPVAKDTYKLEQITIT 138

Query: 147 IKKLSEVDAF-------SDRETMSQSPKS 169
            KK +E DA        S  +  S+ PKS
Sbjct: 139 TKKSNEGDALKGQNNDESTTQAKSEVPKS 167

[Close]
BLAST of Cla002476 vs. NCBI nr
Match: gi|778697752|ref|XP_011654390.1| (PREDICTED: uncharacterized protein LOC105435379 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 2.1e-14
Identity = 52/159 (32.70%), Postives = 78/159 (49.06%), Query Frame = 1 

Query: 1   MIGDIEILKESFTTPLTKMDKSGVKKNETEEARATLPEKRTNDGFDPKAYKLLAKADYDF 60
           MIG IEIL+ESFTTPLTK++K   K+ +T+   A LP++R   GFD KAY L+AK  YDF
Sbjct: 206 MIGSIEILEESFTTPLTKIEKGETKRLKTKSVEAFLPKRRITGGFDQKAYTLMAKVGYDF 265

Query: 61  TAHTEFKTLKISDERPE-LSPTQRKLQFKFYQQGIRKVDADTKPFSEAESHFADGKFYMK 120
           T     K L  + ++ E  SPT    +  F +  +       KP+    S          
Sbjct: 266 TTLVNLKVLNTTSKKIESASPTPNARESAFKRLNVSLTRGQKKPYIAVSSKHG------- 325

Query: 121 SDNISEVISTKVSMAKGSYRPEQRMVTIKKLSEVDAFSD 159
                  ++ +    + S   E+++   K+ S  +AF +
Sbjct: 326 -------LAARNDEIRSSIEDEEKIFCFKEASNYEAFEE 350


HSP 2 Score: 94.0 bits (232), Expect = 2.9e-16
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1 

Query: 2   IGDIEILKESFTTPLTKMDKSGVKKNETEEARATLPEKRTNDGFDPKAYKLLAKADYDFT 61
           +GDIE+L+ESFTTPLTK+ K   K ++TE   A+LP++RT DGFDPKAYKL+AKA YDFT
Sbjct: 224 VGDIEVLRESFTTPLTKITKQETKTDQTE---ASLPQRRTKDGFDPKAYKLMAKAGYDFT 283

Query: 62  AHTEFK 68
            H EFK
Sbjct: 284 THIEFK 286

The following BLAST results are available for this feature:
BLAST of Cla002476 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0K9RJK8_SPIOL3.4e-0838.46Uncharacterized protein OS=Spinacia oleracea GN=SOVF_065000 PE=4 SV=1[more]
A0A0K9RJK8_SPIOL2.0e+0031.11Uncharacterized protein OS=Spinacia oleracea GN=SOVF_065000 PE=4 SV=1[more]
B0F6T3_CUCSA5.5e-0656.36Gypsy-like retrotransposase OS=Cucumis sativus PE=4 SV=1[more]
BLAST of Cla002476 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778660504|ref|XP_011656345.1|3.5e-2270.24PREDICTED: uncharacterized protein LOC105435721 isoform X1 [Cucumis sativus][more]
gi|778660504|ref|XP_011656345.1|1.8e-1042.86PREDICTED: uncharacterized protein LOC105435721 isoform X1 [Cucumis sativus][more]
gi|659074577|ref|XP_008437679.1|1.2e-1750.59PREDICTED: uncharacterized protein LOC103483019 [Cucumis melo][more]
gi|659074577|ref|XP_008437679.1|3.0e+0352.00PREDICTED: uncharacterized protein LOC103483019 [Cucumis melo][more]
gi|778697752|ref|XP_011654390.1|2.1e-1432.70PREDICTED: uncharacterized protein LOC105435379 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002476Cla002476.1mRNA