Cla002465 (gene) Watermelon (97103) v1

Overview
NameCla002465
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr8 : 9892491 .. 9892688 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAACGAGAATGTCAAAGCTCGCCGCCCACGGCGGTCAGGGAACGCTAGCGCTGGCGGTCAGATTAACCGTCTTTCTCGATCAGCTCGAAGGACCGGCGGCAGTAAAACCAACCGTGGTCCTCCGCCGAAGATGAGCACTGGCGGCGGCGGTCAGACAAACTAA

mRNA sequence

ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAACGAGAATGTCAAAGCTCGCCGCCCACGGCGGTCAGGGAACGCTAGCGCTGGCGGTCAGATTAACCGTCTTTCTCGATCAGCTCGAAGGACCGGCGGCAGTAAAACCAACCGTGGTCCTCCGCCGAAGATGAGCACTGGCGGCGGCGGTCAGACAAACTAA

Coding sequence (CDS)

ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAACGAGAATGTCAAAGCTCGCCGCCCACGGCGGTCAGGGAACGCTAGCGCTGGCGGTCAGATTAACCGTCTTTCTCGATCAGCTCGAAGGACCGGCGGCAGTAAAACCAACCGTGGTCCTCCGCCGAAGATGAGCACTGGCGGCGGCGGTCAGACAAACTAA

Protein sequence

MESSSSSLQKSNNENVKARRPRRSGNASAGGQINRLSRSARRTGGSKTNRGPPPKMSTGGGGQTN
Homology
[Close]
BLAST of Cla002465 vs. TrEMBL
Match: A0A0A0KAN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020130 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-13
Identity = 45/66 (68.18%), Postives = 49/66 (74.24%), Query Frame = 1 

Query: 1  MESSSSSLQKSNNENVKARRPRRSGNASAGGQINRL-SRSARRTGGSKTNRGPPPKMSTG 60
          MESSSSSL+K+NN+N KA R R S NA  G QINR  SR  +R   SKTNR PPPK STG
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GGGQTN 66
          GGGQTN
Sbjct: 61 GGGQTN 66

[Close]
BLAST of Cla002465 vs. TrEMBL
Match: A0A0A0L7D2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258100 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.2e-08
Identity = 39/66 (59.09%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 1  MESSSSSLQKSNNENVKARRPRR-SGNASAGGQINRLSRSARRTGGSKTNRGPPPKMSTG 60
          MESSSS LQK+N +N KA R RR + NA       R SR  RR   SK N  PPPK STG
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNA------RRHSRPPRRARNSKINPAPPPKKSTG 60

Query: 61 GGGQTN 66
          GGGQTN
Sbjct: 61 GGGQTN 60

[Close]
BLAST of Cla002465 vs. NCBI nr
Match: gi|700190695|gb|KGN45899.1| (hypothetical protein Csa_6G020130 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 3.2e-13
Identity = 45/66 (68.18%), Postives = 49/66 (74.24%), Query Frame = 1 

Query: 1  MESSSSSLQKSNNENVKARRPRRSGNASAGGQINRL-SRSARRTGGSKTNRGPPPKMSTG 60
          MESSSSSL+K+NN+N KA R R S NA  G QINR  SR  +R   SKTNR PPPK STG
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GGGQTN 66
          GGGQTN
Sbjct: 61 GGGQTN 66

[Close]
BLAST of Cla002465 vs. NCBI nr
Match: gi|700202575|gb|KGN57708.1| (hypothetical protein Csa_3G258100 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 8.9e-08
Identity = 39/66 (59.09%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 1  MESSSSSLQKSNNENVKARRPRR-SGNASAGGQINRLSRSARRTGGSKTNRGPPPKMSTG 60
          MESSSS LQK+N +N KA R RR + NA       R SR  RR   SK N  PPPK STG
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNA------RRHSRPPRRARNSKINPAPPPKKSTG 60

Query: 61 GGGQTN 66
          GGGQTN
Sbjct: 61 GGGQTN 60

The following BLAST results are available for this feature:
BLAST of Cla002465 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAN3_CUCSA2.2e-1368.18Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020130 PE=4 SV=1[more]
A0A0A0L7D2_CUCSA6.2e-0859.09Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258100 PE=4 SV=1[more]
BLAST of Cla002465 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190695|gb|KGN45899.1|3.2e-1368.18hypothetical protein Csa_6G020130 [Cucumis sativus][more]
gi|700202575|gb|KGN57708.1|8.9e-0859.09hypothetical protein Csa_3G258100 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002465Cla002465.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla002465Cucumber (Gy14) v2cgybwmB436
Cla002465Melon (DHL92) v3.6.1medwmB306
Cla002465Cucumber (Chinese Long) v3cucwmB491
Cla002465Watermelon (97103) v2wmwmbB105
Cla002465Cucumber (Gy14) v1cgywmB661
Cla002465Wild cucumber (PI 183967)cpiwmB480
Cla002465Watermelon (Charleston Gray)wcgwmB406
Cla002465Watermelon (Charleston Gray)wcgwmB410
Cla002465Cucumber (Chinese Long) v2cuwmB463