Cla002461 (gene) Watermelon (97103) v1

NameCla002461
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr8 : 9803154 .. 9804168 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCCAATAGTTGACAAGAAAGAACTACTTGAAGCTGCCCGAGAGTCATTTACACATTCAAATGATAAAGCGTGTCAATTAGCAATAGGTTTGCTTTCGAACATTGTTGTAGTTGGCACCATGTTTGAGTGTAAAGGAATTGAAAAGGTTAATGGAATGCCTTTAAGACCAGATAATGTGAAGGTATTTGTTGAAATCCCATTTGGGGAAAACATTCTGGTTCCAATACTGGAGAAGGGTAAGATTGAGAATATTTCTCAAGCTACAGGTAAGTTAGTTGCATTGCCACGTAGTCTTGTTCAAATCATGAAAGACAAGGTATGTTTATCAAACTGCATGTTCAAACTGCATGTTTCAATATATATGATGTTACATTAATACATATTGAAATTATAATTATATTATATGTTTAATAGGATCCCAAACCAGTTGCAATAACCAAACATGCTTTTCTTGGCAATTTATCTCTTCCTACATGTATTAAATTTTTATATCGATATGTTGAAAAACTTTCCAAGCATGATGCACTGAGGGTGCCCCTCAATGATCGAGTCTACGGAAAGGGGAAAACAGTTTTTCTTATGCAAGAGGATGTCATGCAACTATGCGAAATAGTAGAAATATCAAATTCATGTTTACTAGACTACATTGGGTAAGTGACATATTTGATAATTTTGTGTGTAATTATTAAAATTATAGAATTACTGAATATGTTCAATAAAACGTATGTATATAGGTTTCTTTGGAAATATTTTGAAGGTTCAAAAGTACTGAACCTATTCAAAGTAGTAGACTCAAACGATTTTGCACCTTGTTTTGGGTCACTGACCAATCATGCAAGAACTCTTTCAATGGTCTTCTCAGATCAACCATGATAAAGGGTGTTCATTCCTTACAATCCTGGGTAAGAGTTTAAATTATATATATTAGTTGGATTTTATTGTAGCTTTCGATAAGATAATCCTACTTTTTTTTTTTTTTATAGAGGTCATTGGATATTGTGTGTGGTTGA

mRNA sequence

ATGGAGCCAATAGTTGACAAGAAAGAACTACTTGAAGCTGCCCGAGAGTCATTTACACATTCAAATGATAAAGCGTGTCAATTAGCAATAGGTTTGCTTTCGAACATTGTTGTAGTTGGCACCATGTTTGAGTGTAAAGGAATTGAAAAGGTTAATGGAATGCCTTTAAGACCAGATAATGTGAAGGTATTTGTTGAAATCCCATTTGGGGAAAACATTCTGGTTCCAATACTGGAGAAGGGTAAGATTGAGAATATTTCTCAAGCTACAGGTAAGTTAGTTGCATTGCCACGTAGTCTTGTTCAAATCATGAAAGACAAGCATGATGCACTGAGGGTGCCCCTCAATGATCGAGTCTACGGAAAGGGGAAAACAGTTTTTCTTATGCAAGAGGATGTCATGCAACTATGCGAAATAGTAGAAATATCAAATTCATGTTTACTAGACTACATTGGGTTCAAAAGTACTGAACCTATTCAAAGTAGTAGACTCAAACGATTTTGCACCTTGTTTTGGGTCACTGACCAATCATGCAAGAACTCTTTCAATGGTCTTCTCAGATCAACCATGATAAAGGGTGTTCATTCCTTACAATCCTGGAGGTCATTGGATATTGTGTGTGGTTGA

Coding sequence (CDS)

ATGGAGCCAATAGTTGACAAGAAAGAACTACTTGAAGCTGCCCGAGAGTCATTTACACATTCAAATGATAAAGCGTGTCAATTAGCAATAGGTTTGCTTTCGAACATTGTTGTAGTTGGCACCATGTTTGAGTGTAAAGGAATTGAAAAGGTTAATGGAATGCCTTTAAGACCAGATAATGTGAAGGTATTTGTTGAAATCCCATTTGGGGAAAACATTCTGGTTCCAATACTGGAGAAGGGTAAGATTGAGAATATTTCTCAAGCTACAGGTAAGTTAGTTGCATTGCCACGTAGTCTTGTTCAAATCATGAAAGACAAGCATGATGCACTGAGGGTGCCCCTCAATGATCGAGTCTACGGAAAGGGGAAAACAGTTTTTCTTATGCAAGAGGATGTCATGCAACTATGCGAAATAGTAGAAATATCAAATTCATGTTTACTAGACTACATTGGGTTCAAAAGTACTGAACCTATTCAAAGTAGTAGACTCAAACGATTTTGCACCTTGTTTTGGGTCACTGACCAATCATGCAAGAACTCTTTCAATGGTCTTCTCAGATCAACCATGATAAAGGGTGTTCATTCCTTACAATCCTGGAGGTCATTGGATATTGTGTGTGGTTGA

Protein sequence

MEPIVDKKELLEAARESFTHSNDKACQLAIGLLSNIVVVGTMFECKGIEKVNGMPLRPDNVKVFVEIPFGENILVPILEKGKIENISQATGKLVALPRSLVQIMKDKHDALRVPLNDRVYGKGKTVFLMQEDVMQLCEIVEISNSCLLDYIGFKSTEPIQSSRLKRFCTLFWVTDQSCKNSFNGLLRSTMIKGVHSLQSWRSLDIVCG
BLAST of Cla002461 vs. TrEMBL
Match: A0A0A0L021_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056570 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.3e-10
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 1

Query: 26  CQLAIGLLSNIVVVGTMFECK-GIEKVNGMPLRPDNVKVFVEIPFGENILVPILEKGKIE 85
           C LAIG L N+V +G MFE       ++G+PL  DN++V V++   E++ +PI  KG+IE
Sbjct: 296 CHLAIGSLDNVVAIGKMFESDVQCPTIHGIPLGADNIRVTVDVIMVEDVALPIPLKGEIE 355

Query: 86  NISQATGKLVALPRSLVQIMKDK 108
            ++QA G  VALPR LV + ++K
Sbjct: 356 TLNQAIGNFVALPRKLVILTQEK 378

BLAST of Cla002461 vs. NCBI nr
Match: gi|778691222|ref|XP_011653243.1| (PREDICTED: uncharacterized protein LOC101213947 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 1.8e-17
Identity = 55/164 (33.54%), Postives = 86/164 (52.44%), Query Frame = 1

Query: 26  CQLAIGLLSNIVVVGTMFECK-GIEKVNGMPLRPDNVKVFVEIPFGENILVPILEKGKIE 85
           C LAIG L N+V +G MFE       ++G+PL  DN++V V++   E++ +PI  KG+IE
Sbjct: 374 CHLAIGSLDNVVAIGKMFESDVQCPTIHGIPLGADNIRVTVDVIMVEDVALPIPLKGEIE 433

Query: 86  NISQATGKLVALPRSLVQIMKDKH------------------------------------ 145
            ++QA G  VALPR LV + ++K                                     
Sbjct: 434 TLNQAIGNFVALPRKLVILTQEKKAPSMAATESTTQSSKYTDVHVTIKLLNRYAIHTMQV 493

Query: 146 -DALRVPLNDRVYGKGKTVFLMQEDVMQLCEIVEISNSCLLDYI 152
            D +++ LN+ ++GK KT++L  +D++Q C + EI  SC+L YI
Sbjct: 494 KDMIQINLNEHIFGKEKTIYLRPDDIIQYCGMTEIGYSCILTYI 537

BLAST of Cla002461 vs. NCBI nr
Match: gi|659101935|ref|XP_008451868.1| (PREDICTED: uncharacterized protein LOC103493028 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 4.0e-17
Identity = 60/188 (31.91%), Postives = 94/188 (50.00%), Query Frame = 1

Query: 4   IVDKKELLEAA--RESFTHSNDKACQLAIGLLSNIVVVGTMFECK-GIEKVNGMPLRPDN 63
           + + +E LE    +E    S    C LAIG L N+V VG MFE       ++G+PL  +N
Sbjct: 350 VKESEETLEVQVLQEPENISKGIPCHLAIGSLDNVVAVGKMFESDVQCPTIHGIPLGAEN 409

Query: 64  VKVFVEIPFGENILVPILEKGKIENISQATGKLVALPRSLVQIMKDK------------- 123
           ++V V+I   E++ +PI  KG IE ++QA G  VA PR LV + K+K             
Sbjct: 410 IRVTVDIAMVEDVALPIPLKGDIETLNQAIGNFVAWPRKLVIVTKEKKAPSLTASESTTQ 469

Query: 124 ------------------------HDALRVPLNDRVYGKGKTVFLMQEDVMQLCEIVEIS 152
                                    D +++ L++ ++GK KT++L ++D++Q C + EI 
Sbjct: 470 SSKYTDVHVTIKLLNRYAMQTMQVEDIIQISLSEHIFGKEKTIYLRRDDIIQYCGMTEIG 529

BLAST of Cla002461 vs. NCBI nr
Match: gi|700198308|gb|KGN53466.1| (hypothetical protein Csa_4G056570 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 6.1e-10
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 1

Query: 26  CQLAIGLLSNIVVVGTMFECK-GIEKVNGMPLRPDNVKVFVEIPFGENILVPILEKGKIE 85
           C LAIG L N+V +G MFE       ++G+PL  DN++V V++   E++ +PI  KG+IE
Sbjct: 296 CHLAIGSLDNVVAIGKMFESDVQCPTIHGIPLGADNIRVTVDVIMVEDVALPIPLKGEIE 355

Query: 86  NISQATGKLVALPRSLVQIMKDK 108
            ++QA G  VALPR LV + ++K
Sbjct: 356 TLNQAIGNFVALPRKLVILTQEK 378

BLAST of Cla002461 vs. NCBI nr
Match: gi|470105866|ref|XP_004289299.1| (PREDICTED: uncharacterized protein LOC101298373 [Fragaria vesca subsp. vesca])

HSP 1 Score: 71.2 bits (173), Expect = 2.3e-09
Identity = 50/184 (27.17%), Postives = 85/184 (46.20%), Query Frame = 1

Query: 5   VDKKELLEAARESFTHSNDKACQLAIGLLSNIVVVGTMFECKGIEK-VNGMPLRPDNVKV 64
           +D +      R+ F     K+C+LA+GL+ N+V  GT+ E       V+G+PL   N++V
Sbjct: 358 IDSEAFSFGGRKEFMKG--KSCRLAVGLIDNVVSHGTIIEVDAANHTVHGVPLGEGNIRV 417

Query: 65  FVEIPFGENILVPILEKGKIENISQATGKLVALPRSLVQIMKDKH-------------DA 124
            ++    E  L+PI   G++  + QA G  VA P+ LV++M D+              + 
Sbjct: 418 AIDTALDEQALLPIPVTGELVTVGQAVGSHVAWPKRLVKLMSDEELGSTSIKPRDFPKED 477

Query: 125 LRVPLNDRV-----------------------YGKGKTVFLMQEDVMQLCEIVEISNSCL 152
           + +P + ++                       +G  KTV + +EDVMQ  E+ EI   C+
Sbjct: 478 VNLPKSLKLLYRYAERAMMDGEPISVFVEEAVFGIAKTVNIFKEDVMQFMEMKEIPPRCI 537

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L021_CUCSA4.3e-1044.58Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056570 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778691222|ref|XP_011653243.1|1.8e-1733.54PREDICTED: uncharacterized protein LOC101213947 [Cucumis sativus][more]
gi|659101935|ref|XP_008451868.1|4.0e-1731.91PREDICTED: uncharacterized protein LOC103493028 [Cucumis melo][more]
gi|700198308|gb|KGN53466.1|6.1e-1044.58hypothetical protein Csa_4G056570 [Cucumis sativus][more]
gi|470105866|ref|XP_004289299.1|2.3e-0927.17PREDICTED: uncharacterized protein LOC101298373 [Fragaria vesca subsp. vesca][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002461Cla002461.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla002461Cla97C08G146780Watermelon (97103) v2wmwmbB105
Cla002461ClCG08G002920Watermelon (Charleston Gray)wcgwmB406
The following gene(s) are paralogous to this gene:

None