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The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGCTTTCACGTTCTCAGAGCCCCTCCTCTCTCTTCCTCCACAGCCACTTCTTCTGCTTCCATCCTCTTCAAATTTGGCTATGCTCTCTATTCTTCTCCCTTTTCCAAATCTTCCTCCTCCTCCAGAATCTATTTTCGAGCTTCAGCGAAATATGTTGGTTCTACAGCCACTCCAATTCCGGGGTCTTTATCTCGGAGGACTCGTGGCTTTATTGCAGCTACAGCTGCACCTGGGTCACTCCGCAAATCGGAAGAATTGAGGCCTTCTATTTCGCCTGAGCAATCTTGGGTTCAGAGACAAACTGGAACTGAGTAA mRNA sequence ATGGGCTTTCACGTTCTCAGAGCCCCTCCTCTCTCTTCCTCCACAGCCACTTCTTCTGCTTCCATCCTCTTCAAATTTGGCTATGCTCTCTATTCTTCTCCCTTTTCCAAATCTTCCTCCTCCTCCAGAATCTATTTTCGAGCTTCAGCGAAATATGTTGGTTCTACAGCCACTCCAATTCCGGGGTCTTTATCTCGGAGGACTCGTGGCTTTATTGCAGCTACAGCTGCACCTGGGTCACTCCGCAAATCGGAAGAATTGAGGCCTTCTATTTCGCCTGAGCAATCTTGGGTTCAGAGACAAACTGGAACTGAGTAA Coding sequence (CDS) ATGGGCTTTCACGTTCTCAGAGCCCCTCCTCTCTCTTCCTCCACAGCCACTTCTTCTGCTTCCATCCTCTTCAAATTTGGCTATGCTCTCTATTCTTCTCCCTTTTCCAAATCTTCCTCCTCCTCCAGAATCTATTTTCGAGCTTCAGCGAAATATGTTGGTTCTACAGCCACTCCAATTCCGGGGTCTTTATCTCGGAGGACTCGTGGCTTTATTGCAGCTACAGCTGCACCTGGGTCACTCCGCAAATCGGAAGAATTGAGGCCTTCTATTTCGCCTGAGCAATCTTGGGTTCAGAGACAAACTGGAACTGAGTAA Protein sequence MGFHVLRAPPLSSSTATSSASILFKFGYALYSSPFSKSSSSSRIYFRASAKYVGSTATPIPGSLSRRTRGFIAATAAPGSLRKSEELRPSISPEQSWVQRQTGTE
BLAST of Cla002375 vs. TrEMBL
Match: A0A0A0KDY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G411190 PE=4 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 2.4e-25 Identity = 76/117 (64.96%), Postives = 81/117 (69.23%), Query Frame = 1
Query: 1 MGFHVLRAPPLSSSTA-----TSSASILFKFGYALYSSPFSKSSSSSRIYFRASA-KYVG 60
MGFHVLRAPPLSSST TSS+S LFKF Y LYS PFSKSSSSS YF S+ YV
Sbjct: 1 MGFHVLRAPPLSSSTTIFFKPTSSSSFLFKFRYPLYSPPFSKSSSSSISYFLPSSPNYVA 60
Query: 61 STATPI--PGSLSRRTR----GFIAATAAPGSLRKSEELRPSISPEQSWVQRQTGTE 106
S T I GS SR TR GFIAA A GS+++SEELRPSIS EQSWV Q GTE
Sbjct: 61 SPTTAILLSGSFSRSTRRFRGGFIAAATASGSVQRSEELRPSISSEQSWVLGQNGTE 117
BLAST of Cla002375 vs. NCBI nr
Match: gi|659097074|ref|XP_008449427.1| (PREDICTED: CDK5RAP1-like protein [Cucumis melo]) HSP 1 Score: 123.6 bits (309), Expect = 2.0e-25 Identity = 75/114 (65.79%), Postives = 80/114 (70.18%), Query Frame = 1
Query: 1 MGFHVLRAPPLSSSTAT--SSASILFKFGYALYSSPFSKSSSSSRIYFRASA-KYVGS-- 60
MGFHVLRAPP SSST S LFKF YALYS PFSKSSSSS YF S+ YV S
Sbjct: 1 MGFHVLRAPPFSSSTTIIFKPTSSLFKFRYALYSPPFSKSSSSSISYFLPSSPNYVASPT 60
Query: 61 TATPIPGSLSRRTR----GFIAATAAPGSLRKSEELRPSISPEQSWVQRQTGTE 106
TA P+ GS SR TR GFIAAT A GS+++ EELRPSIS EQSWV RQ GTE
Sbjct: 61 TAIPLSGSFSRSTRRFRGGFIAATTASGSVQRLEELRPSISTEQSWVLRQNGTE 114
BLAST of Cla002375 vs. NCBI nr
Match: gi|449444679|ref|XP_004140101.1| (PREDICTED: CDK5RAP1-like protein [Cucumis sativus]) HSP 1 Score: 122.9 bits (307), Expect = 3.4e-25 Identity = 76/117 (64.96%), Postives = 81/117 (69.23%), Query Frame = 1
Query: 1 MGFHVLRAPPLSSSTA-----TSSASILFKFGYALYSSPFSKSSSSSRIYFRASA-KYVG 60
MGFHVLRAPPLSSST TSS+S LFKF Y LYS PFSKSSSSS YF S+ YV
Sbjct: 1 MGFHVLRAPPLSSSTTIFFKPTSSSSFLFKFRYPLYSPPFSKSSSSSISYFLPSSPNYVA 60
Query: 61 STATPI--PGSLSRRTR----GFIAATAAPGSLRKSEELRPSISPEQSWVQRQTGTE 106
S T I GS SR TR GFIAA A GS+++SEELRPSIS EQSWV Q GTE
Sbjct: 61 SPTTAILLSGSFSRSTRRFRGGFIAAATASGSVQRSEELRPSISSEQSWVLGQNGTE 117
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KDY2_CUCSA | 2.4e-25 | 64.96 | Uncharacterized protein OS=Cucumis sativus GN=Csa_6G411190 PE=4 SV=1 | [more] |
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008150 |
biological_process |
| biological_process |
GO:0046777 |
protein autophosphorylation |
| biological_process |
GO:0045736 |
negative regulation of cyclin-dependent protein serine/threonine kinase activity |
| biological_process |
GO:0035600 |
tRNA methylthiolation |
| biological_process |
GO:0045859 |
regulation of protein kinase activity |
| biological_process |
GO:0009451 |
RNA modification |
| biological_process |
GO:0000079 |
regulation of cyclin-dependent protein serine/threonine kinase activity |
| biological_process |
GO:0007131 |
reciprocal meiotic recombination |
| biological_process |
GO:0010155 |
regulation of proton transport |
| biological_process |
GO:0006655 |
phosphatidylglycerol biosynthetic process |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| biological_process |
GO:0016226 |
iron-sulfur cluster assembly |
| biological_process |
GO:0009793 |
embryo development ending in seed dormancy |
| biological_process |
GO:0009691 |
cytokinin biosynthetic process |
| biological_process |
GO:0009073 |
aromatic amino acid family biosynthetic process |
| cellular_component |
GO:0005575 |
cellular_component |
| cellular_component |
GO:0005829 |
cytosol |
| cellular_component |
GO:0005739 |
mitochondrion |
| molecular_function |
GO:0032440 |
2-alkenal reductase [NAD(P)] activity |
| molecular_function |
GO:0051539 |
4 iron, 4 sulfur cluster binding |
| molecular_function |
GO:0016740 |
transferase activity |
| molecular_function |
GO:0035596 |
methylthiotransferase activity |
| molecular_function |
GO:0019887 |
protein kinase regulator activity |
| molecular_function |
GO:0003674 |
molecular_function |
| molecular_function |
GO:0035597 |
N6-isopentenyladenosine methylthiotransferase activity |
The following mRNA feature(s) are a part of this gene:
| Feature Name | Unique Name | Type |
|---|
| Cla002375 | Cla002375.1 | mRNA |
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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