Cla002273 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002273
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019404 Mediator complex, subunit Med11
Location	Chr7 : 1322387 .. 1322699 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCGCCAACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGGTTGGAACTATTTCCATACCAAAAGCTTTTTGTTTCTAGTTCTTTGGATGGTCTTTATTGTAGCACGATATTCTTTTTGGCCAACTTTTGTGTTTCACTCCTGCAGAGAATTGTGAGAGTTTTGGAGCTAGCGGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGTGAGCCCTCTGTGTTTGACAGTGGTTCTTATATGA

mRNA sequence

ATGGATCCGCCAACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGAGAATTGTGAGAGTTTTGGAGCTAGCGGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGTGAGCCCTCTGTGTTTGACAGTGGTTCTTATATGA

Coding sequence (CDS)

ATGGATCCGCCAACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGAGAATTGTGAGAGTTTTGGAGCTAGCGGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGTGAGCCCTCTGTGTTTGACAGTGGTTCTTATATGA

Protein sequence

MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKVSPLCLTVVLI

Homology

[Close]

BLAST of Cla002273 vs. Swiss-Prot
Match: MED11_ARATH (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana GN=MED11 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.6e-20
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 1


Query: 1  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +K
Sbjct: 1  MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMK 57

[Close]

BLAST of Cla002273 vs. TrEMBL
Match: A0A0A0L450_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594450 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.5e-23
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 1


Query: 1  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MDPP  NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Sbjct: 1  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 57

[Close]

BLAST of Cla002273 vs. TrEMBL
Match: A0A061GG64_THECC (Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM_030340 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.5e-20
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 1


Query: 1  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MD PTQNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IK
Sbjct: 1  MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIK 57

[Close]

BLAST of Cla002273 vs. TrEMBL
Match: A0A0B0N6V2_GOSAR (Mediator of RNA polymerase II transcription subunit 11 OS=Gossypium arboreum GN=F383_14611 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.5e-20
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 1


Query: 1  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MD PTQNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IK
Sbjct: 1  MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIK 57

[Close]

BLAST of Cla002273 vs. TrEMBL
Match: W9R6A2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026253 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.5e-20
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1


Query: 1  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MD  TQNTSLQRLQNVEKRIVRVLELAGGVM+EL+NPAGPRKEFVNNHC EFMQ IK
Sbjct: 1  MDSQTQNTSLQRLQNVEKRIVRVLELAGGVMDELSNPAGPRKEFVNNHCREFMQLIK 57

[Close]

BLAST of Cla002273 vs. TrEMBL
Match: M1C635_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400023560 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.3e-20
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 1  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MD  +QNTSLQRLQNVEKRIVRVLELAGGVM+E+ANP+GPRKEF+NNHCSEFMQ IK
Sbjct: 1  MDSQSQNTSLQRLQNVEKRIVRVLELAGGVMDEMANPSGPRKEFINNHCSEFMQLIK 57

[Close]

BLAST of Cla002273 vs. NCBI nr
Match: gi|659082827|ref|XP_008442051.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 2.1e-23
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1


Query: 1  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MDPP QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Sbjct: 1  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 57

[Close]

BLAST of Cla002273 vs. NCBI nr
Match: gi|449453808|ref|XP_004144648.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 7.9e-23
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 1


Query: 1  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MDPP  NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Sbjct: 1  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 57

[Close]

BLAST of Cla002273 vs. NCBI nr
Match: gi|700199753|gb|KGN54911.1| (hypothetical protein Csa_4G594450 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 7.9e-23
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 1


Query: 1  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MDPP  NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Sbjct: 1  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 57

[Close]

BLAST of Cla002273 vs. NCBI nr
Match: gi|590626684|ref|XP_007026238.1| (Mediator of RNA polymerase II transcription subunit 11 [Theobroma cacao])

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-20
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 1


Query: 1  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MD PTQNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IK
Sbjct: 1  MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIK 57

[Close]

BLAST of Cla002273 vs. NCBI nr
Match: gi|728830775|gb|KHG10218.1| (Mediator of RNA polymerase II transcription subunit 11 [Gossypium arboreum])

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-20
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 1


Query: 1  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MD PTQNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IK
Sbjct: 1  MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIK 57

The following BLAST results are available for this feature:

BLAST of Cla002273 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED11_ARATH	1.6e-20	80.70	Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana G...	[more]

BLAST of Cla002273 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L450_CUCSA	5.5e-23	96.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594450 PE=4 SV=1	[more]
A0A061GG64_THECC	1.5e-20	87.72	Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM...	[more]
A0A0B0N6V2_GOSAR	1.5e-20	87.72	Mediator of RNA polymerase II transcription subunit 11 OS=Gossypium arboreum GN=...	[more]
W9R6A2_9ROSA	2.5e-20	89.47	Uncharacterized protein OS=Morus notabilis GN=L484_026253 PE=4 SV=1	[more]
M1C635_SOLTU	4.3e-20	85.96	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400023560 PE=4 SV=1	[more]

BLAST of Cla002273 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082827\|ref\|XP_008442051.1\|	2.1e-23	98.25	PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]	[more]
gi\|449453808\|ref\|XP_004144648.1\|	7.9e-23	96.49	PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis sativ...	[more]
gi\|700199753\|gb\|KGN54911.1\|	7.9e-23	96.49	hypothetical protein Csa_4G594450 [Cucumis sativus]	[more]
gi\|590626684\|ref\|XP_007026238.1\|	2.1e-20	87.72	Mediator of RNA polymerase II transcription subunit 11 [Theobroma cacao]	[more]
gi\|728830775\|gb\|KHG10218.1\|	2.1e-20	87.72	Mediator of RNA polymerase II transcription subunit 11 [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019404	Mediator_Med11

Vocabulary: **Molecular Function**
Term	Definition
GO:0001104	RNA polymerase II transcription cofactor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU13322	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU32164	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU41482	watermelon EST collection version 2.0	transcribed_cluster
WMU58134	watermelon EST collection version 2.0	transcribed_cluster
WMU58458	watermelon EST collection version 2.0	transcribed_cluster
WMU65926	watermelon EST collection version 2.0	transcribed_cluster
WMU68956	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002273	Cla002273.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU41482	WMU41482	transcribed_cluster
WMU13322	WMU13322	transcribed_cluster
WMU58134	WMU58134	transcribed_cluster
WMU32164	WMU32164	transcribed_cluster
WMU68956	WMU68956	transcribed_cluster
WMU58458	WMU58458	transcribed_cluster
WMU65926	WMU65926	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019404	Mediator complex, subunit Med11	PFAM	PF10280	Med11	coord: 8..56 score: 2.
None	No IPR available	PANTHER	PTHR22890	UNCHARACTERIZED	coord: 1..57 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002273	Cla97C07G131250	Watermelon (97103) v2	wmwmbB169
Cla002273	ClCG07G002910	Watermelon (Charleston Gray)	wcgwmB367

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002273	Watermelon (Charleston Gray)	wcgwmB188
Cla002273	Cucumber (Chinese Long) v2	cuwmB584
Cla002273	Cucurbita pepo (Zucchini)	cpewmB259
Cla002273	Cucurbita pepo (Zucchini)	cpewmB651
Cla002273	Bottle gourd (USVL1VR-Ls)	lsiwmB097
Cla002273	Cucumber (Gy14) v2	cgybwmB546
Cla002273	Melon (DHL92) v3.6.1	medwmB221
Cla002273	Silver-seed gourd	carwmB0717
Cla002273	Silver-seed gourd	carwmB0878
Cla002273	Cucumber (Chinese Long) v3	cucwmB614
Cla002273	Watermelon (97103) v2	wmwmbB156
Cla002273	Wax gourd	wgowmB268
Cla002273	Watermelon (97103) v1	wmwmB109
Cla002273	Cucumber (Gy14) v1	cgywmB258
Cla002273	Cucurbita maxima (Rimu)	cmawmB105
Cla002273	Cucurbita maxima (Rimu)	cmawmB493
Cla002273	Cucurbita moschata (Rifu)	cmowmB094
Cla002273	Cucurbita moschata (Rifu)	cmowmB487
Cla002273	Melon (DHL92) v3.5.1	mewmB226