Cla002198 (gene) Watermelon (97103) v1

Overview
NameCla002198
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr7 : 7233562 .. 7234741 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTCAACAAGAGCCTAGTGAGTTAGAAGTGGCCACTTATGTGGATAGAGGACAATACCGAGGTCAACAACAACTCACGACTCACTATCATCCCAATTTGAGGAATCACGAGAACTTCTCATATGCCAACAACAAGAATGTGTTGCAAGCACCTCAAGGATTCAATGGAGCAGGGAATGCAAAGACATCTTCACTAGAGGACATAATGCTTGACTTTGTCAAAGAGTCAAGATCAAGGACAACCACATTGGAGAATTCGATCCAAGCTATTTCAAGCACCGTTCAAAGCCAAGGTAAGGCACTTCATGTCACACCCCCTCCCAGATTCCCTCTTACTCTAGGAGTGAGTGTGAACCAGCATACACCTGTTCCCTACTGTAGCTATAACATTAATCAACTACAAATCATTTACACTTAACTATATGCCATATAACCTCACAAGATAACATAACTTATCAAGATAAGTGTTGTTTTTTATATACACAACAAAAAAAAATCCCACTACATCCCAAGGAACATGTATGACAAATAAACATGTACGTAAACCGTGTATTTACAACTATCCCAGAGGACTGATCCAAAGTAGGCCCAGACGAGAATTTTCAATAAGCTAGGCGTCCTCGGACACGCTCGCTACCTGAAACAAGCAAATAAACAAAGAAAAACGCGTGAGCCTAAAGCCCAGTGAGTGACGAAATTTATCTAATTATTATTAAACTACTTGAATTAACATGAAACATCAAAACCACCACATATCTATATAACTAGAAATCCCTAAGATAACTCATGCCATAGAACAATAGTAGTACAATTATCCCTTCCTAGCTGTGGCAGAGCAAAGCTCAACGCACTCAACCTTGTGTACCAATTCTCATCACACCCATGTTCAAATGCTTCCACACTCCGTCCCTCGGTATTAAAATTCCTCAAGTGTCTTCACGTATTGTCCCTCAGCACTGAGTTTTACCATATCAGAGTTTCGATGTGCCTTCACACGTGATCCCTCAGCACTGGGTTCCCTATCAATCCACTGCTCAAGTTCCTTCACTTGTGATCCTTCAGCACTTGGCTATCATATATTGGATTTCCATATGCCTTCACACAAGGTCCCTGAGCATTGGAATCCATTTCAACCAACTACTCAAGTGCCTTCACACATGGTTCCTCAGCACTGA

mRNA sequence

ATGGCAAGTCAACAAGAGCCTAGTGAGTTAGAAGTGGCCACTTATGTGGATAGAGGACAATACCGAGGTCAACAACAACTCACGACTCACTATCATCCCAATTTGAGGAATCACGAGAACTTCTCATATGCCAACAACAAGAATGTGTTGCAAGCACCTCAAGGATTCAATGGAGCAGGGAATGCAAAGACATCTTCACTAGAGGACATAATGCTTGACTTTGTCAAAGAGTCAAGATCAAGGACAACCACATTGGAGAATTCGATCCAAGCTATTTCAAGCACCGTTCAAAGCCAAGCACTGGGTTCCCTATCAATCCACTGCTCAAGTTCCTTCACTTGTGATCCTTCAGCACTTGGCTATCATATATTGGATTTCCATATGCCTTCACACAAGGTCCCTGAGCATTGGAATCCATTTCAACCAACTACTCAAGTGCCTTCACACATGGTTCCTCAGCACTGA

Coding sequence (CDS)

ATGGCAAGTCAACAAGAGCCTAGTGAGTTAGAAGTGGCCACTTATGTGGATAGAGGACAATACCGAGGTCAACAACAACTCACGACTCACTATCATCCCAATTTGAGGAATCACGAGAACTTCTCATATGCCAACAACAAGAATGTGTTGCAAGCACCTCAAGGATTCAATGGAGCAGGGAATGCAAAGACATCTTCACTAGAGGACATAATGCTTGACTTTGTCAAAGAGTCAAGATCAAGGACAACCACATTGGAGAATTCGATCCAAGCTATTTCAAGCACCGTTCAAAGCCAAGCACTGGGTTCCCTATCAATCCACTGCTCAAGTTCCTTCACTTGTGATCCTTCAGCACTTGGCTATCATATATTGGATTTCCATATGCCTTCACACAAGGTCCCTGAGCATTGGAATCCATTTCAACCAACTACTCAAGTGCCTTCACACATGGTTCCTCAGCACTGA

Protein sequence

MASQQEPSELEVATYVDRGQYRGQQQLTTHYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSSLEDIMLDFVKESRSRTTTLENSIQAISSTVQSQALGSLSIHCSSSFTCDPSALGYHILDFHMPSHKVPEHWNPFQPTTQVPSHMVPQH
Homology
[Close]
BLAST of Cla002198 vs. NCBI nr
Match: gi|848889435|ref|XP_012844880.1| (PREDICTED: uncharacterized protein LOC105964920 [Erythranthe guttata])

HSP 1 Score: 63.5 bits (153), Expect = 3.6e-07
Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 1 

Query: 3   SQQEPSELEVATYVDR--GQYRG---QQQLTTHYHPNLRNHENFSYANNKNVLQAPQGFN 62
           SQ    + E A +++     +RG   Q Q  THYHP +RNHENFSYAN KN LQ P  FN
Sbjct: 293 SQATNDDWEQAHFMNHRFNNFRGTNNQNQNPTHYHPGIRNHENFSYANPKNALQPPLDFN 352

Query: 63  GAGNAKTSSLEDIMLDFVKESRSRTTTLENSIQAISSTVQSQA 101
                + ++ +D +    +E     +T++N  + I    QS +
Sbjct: 353 HQREQRGTTYDDRLHRQEQEMEGLKSTMKNMEKQIGQIAQSMS 395

[Close]
BLAST of Cla002198 vs. NCBI nr
Match: gi|848933386|ref|XP_012829396.1| (PREDICTED: uncharacterized protein LOC105950575 [Erythranthe guttata])

HSP 1 Score: 63.5 bits (153), Expect = 3.6e-07
Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 1 

Query: 3   SQQEPSELEVATYVDR--GQYRG---QQQLTTHYHPNLRNHENFSYANNKNVLQAPQGFN 62
           SQ    + E A +++     +RG   Q Q  THYHP +RNHENFSYAN KN LQ P  FN
Sbjct: 293 SQATNDDWEQAHFMNHRFNNFRGTNNQNQNPTHYHPGIRNHENFSYANPKNALQPPLDFN 352

Query: 63  GAGNAKTSSLEDIMLDFVKESRSRTTTLENSIQAISSTVQSQA 101
                + ++ +D +    +E     +T++N  + I    QS +
Sbjct: 353 HQREQRGTTYDDRLHRQEQEMEGLKSTMKNMEKQIGQIAQSMS 395

[Close]
BLAST of Cla002198 vs. NCBI nr
Match: gi|848922275|ref|XP_012857675.1| (PREDICTED: uncharacterized protein LOC105976950 [Erythranthe guttata])

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-06
Identity = 31/77 (40.26%), Postives = 43/77 (55.84%), Query Frame = 1 

Query: 24  QQQLTTHYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSSLEDIMLDFVKESRSRTT 83
           Q Q  THYHP +RNHENFSYAN KNVLQ P  FN     +  + ++ +    +E     +
Sbjct: 14  QNQNPTHYHPGIRNHENFSYANPKNVLQPPPDFNHQREQRGPTYDERLHRQEQEMEGLKS 73

Query: 84  TLENSIQAISSTVQSQA 101
           T++N  + I    QS +
Sbjct: 74  TMKNMEKQIRQIAQSMS 90

[Close]
BLAST of Cla002198 vs. NCBI nr
Match: gi|848922272|ref|XP_012857674.1| (PREDICTED: uncharacterized protein LOC105976949 [Erythranthe guttata])

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-06
Identity = 31/77 (40.26%), Postives = 43/77 (55.84%), Query Frame = 1 

Query: 24  QQQLTTHYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSSLEDIMLDFVKESRSRTT 83
           Q Q  THYHP +RNHENFSYAN KNVLQ P  FN     +  + ++ +    +E     +
Sbjct: 14  QNQNPTHYHPGIRNHENFSYANPKNVLQPPPDFNHQREQRGPTYDERLHRQEQEMEGLKS 73

Query: 84  TLENSIQAISSTVQSQA 101
           T++N  + I    QS +
Sbjct: 74  TMKNMEKQIRQIAQSMS 90

[Close]
BLAST of Cla002198 vs. NCBI nr
Match: gi|848853268|ref|XP_012842899.1| (PREDICTED: uncharacterized protein LOC105963074 [Erythranthe guttata])

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-06
Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = 1 

Query: 3   SQQEPSELEVATYVDR--GQYRG---QQQLTTHYHPNLRNHENFSYANNKNVLQAPQGFN 62
           SQ    + E A +++     +RG   Q Q  THYHP +RNHENFSYAN KN LQ P  FN
Sbjct: 435 SQSTNDDWEQAHFMNHRFNNFRGTNNQNQNPTHYHPGIRNHENFSYANPKNALQPPPDFN 494

Query: 63  GAGNAKTSSLEDIMLDFVKESRSRTTTLENSIQAISSTVQSQA 101
                +  + ++ +    +E     +T++N  + I    QS +
Sbjct: 495 HQREQRGPTYDERLHRQEQEMEGLKSTMKNMEKQIGQIAQSMS 537

The following BLAST results are available for this feature:
BLAST of Cla002198 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|848889435|ref|XP_012844880.1|3.6e-0735.92PREDICTED: uncharacterized protein LOC105964920 [Erythranthe guttata][more]
gi|848933386|ref|XP_012829396.1|3.6e-0735.92PREDICTED: uncharacterized protein LOC105950575 [Erythranthe guttata][more]
gi|848922275|ref|XP_012857675.1|1.0e-0640.26PREDICTED: uncharacterized protein LOC105976950 [Erythranthe guttata][more]
gi|848922272|ref|XP_012857674.1|1.0e-0640.26PREDICTED: uncharacterized protein LOC105976949 [Erythranthe guttata][more]
gi|848853268|ref|XP_012842899.1|1.0e-0634.95PREDICTED: uncharacterized protein LOC105963074 [Erythranthe guttata][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002198Cla002198.1mRNA