Cla002186 (gene) Watermelon (97103) v1

NameCla002186
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGDSL esterase/lipase (AHRD V1 ***- F4JZZ2_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL
LocationChr3 : 18273522 .. 18273895 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCACGTTTGTCTGTCGTCGTTCTCGGCGTCGTGCTCGCATTGGCAGCTTTATCCGCCCACACAGAGGCAGGGCGGGCTTTCTTCGTCTTTGGAGACTCTTTGGTTGACAATGGCAACAACAACTACCTTGCCACCACCGCCCGAGCGGATTCGTATCCGTATGGCATTGATTTCCCCACGCACCGCCCGACTGGTCGCTTCTCCAATGGCCTTAACATCCCTGACTATATCAGTTGGGTTCATTTTATCTCTTTTCTTTCATTGAGATTTTTGTTTTTTTTTTTTTCCAATTTAATCTTTTATTCATATTCTTAACACGCGATTCTCAGGTCAGCAACTCGGTTCCGAGTTTTTATTACCGTATTTGA

mRNA sequence

ATGGCAGCACGTTTGTCTGTCGTCGTTCTCGGCGTCGTGCTCGCATTGGCAGCTTTATCCGCCCACACAGAGGCAGGGCGGGCTTTCTTCGTCTTTGGAGACTCTTTGGTTGACAATGGCAACAACAACTACCTTGCCACCACCGCCCGAGCGGATTCGTATCCGTATGGCATTGATTTCCCCACGCACCGCCCGACTGGTCGCTTCTCCAATGGCCTTAACATCCCTGACTATATCAGTTGGGTCAGCAACTCGGTTCCGAGTTTTTATTACCGTATTTGA

Coding sequence (CDS)

ATGGCAGCACGTTTGTCTGTCGTCGTTCTCGGCGTCGTGCTCGCATTGGCAGCTTTATCCGCCCACACAGAGGCAGGGCGGGCTTTCTTCGTCTTTGGAGACTCTTTGGTTGACAATGGCAACAACAACTACCTTGCCACCACCGCCCGAGCGGATTCGTATCCGTATGGCATTGATTTCCCCACGCACCGCCCGACTGGTCGCTTCTCCAATGGCCTTAACATCCCTGACTATATCAGTTGGGTCAGCAACTCGGTTCCGAGTTTTTATTACCGTATTTGA

Protein sequence

MAARLSVVVLGVVLALAALSAHTEAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGIDFPTHRPTGRFSNGLNIPDYISWVSNSVPSFYYRI
BLAST of Cla002186 vs. Swiss-Prot
Match: GDL79_ARATH (GDSL esterase/lipase At5g33370 OS=Arabidopsis thaliana GN=At5g33370 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-23
Identity = 51/68 (75.00%), Postives = 55/68 (80.88%), Query Frame = 1

Query: 13 VLALAALSAHTEAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGIDFPTHRPTGRFSNG 72
          +L + +L       RAF VFGDSLVDNGNN++LATTARAD+YPYGIDFPTHRPTGRFSNG
Sbjct: 15 ILQVTSLLVPQANARAFLVFGDSLVDNGNNDFLATTARADNYPYGIDFPTHRPTGRFSNG 74

Query: 73 LNIPDYIS 81
          LNIPD IS
Sbjct: 75 LNIPDLIS 82

BLAST of Cla002186 vs. Swiss-Prot
Match: GDL67_ARATH (GDSL esterase/lipase At4g28780 OS=Arabidopsis thaliana GN=At4g28780 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.7e-23
Identity = 56/84 (66.67%), Postives = 60/84 (71.43%), Query Frame = 1

Query: 5  LSVVVLGVVLALAALSAHTEAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGIDFPTHR 64
          +  V L V L L  +   T A RAFFVFGDSLVD+GNNNYL TTARADS PYGID+PT R
Sbjct: 10 IMTVALSVTLFL--MPQQTNAARAFFVFGDSLVDSGNNNYLVTTARADSPPYGIDYPTGR 69

Query: 65 PTGRFSNGLNIPDYISWVSNSVPS 89
          PTGRFSNGLN+PD IS    S P+
Sbjct: 70 PTGRFSNGLNLPDIISEQIGSEPT 91

BLAST of Cla002186 vs. Swiss-Prot
Match: GDL77_ARATH (GDSL esterase/lipase At5g18430 OS=Arabidopsis thaliana GN=At5g18430 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.2e-23
Identity = 53/67 (79.10%), Postives = 53/67 (79.10%), Query Frame = 1

Query: 26 GRAFFVFGDSLVDNGNNNYLATTARADSYPYGIDFPTHRPTGRFSNGLNIPDYIS-WVSN 85
          GRAFFVFGDSLVD+GNNNYL TTARADS PYGIDFPT RPTGRFSNGLNIPD IS  + N
Sbjct: 26 GRAFFVFGDSLVDSGNNNYLVTTARADSPPYGIDFPTRRPTGRFSNGLNIPDLISEAIGN 85

Query: 86 SVPSFYY 92
            P   Y
Sbjct: 86 EEPPLPY 92

BLAST of Cla002186 vs. Swiss-Prot
Match: LTL1_ARATH (GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana GN=LTL1 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-22
Identity = 48/54 (88.89%), Postives = 49/54 (90.74%), Query Frame = 1

Query: 27 RAFFVFGDSLVDNGNNNYLATTARADSYPYGIDFPTHRPTGRFSNGLNIPDYIS 81
          RAFFVFGDSLVDNGNN+YL TTARAD+YPYGID+PT RPTGRFSNGLNIPD IS
Sbjct: 28 RAFFVFGDSLVDNGNNDYLVTTARADNYPYGIDYPTRRPTGRFSNGLNIPDIIS 81

BLAST of Cla002186 vs. Swiss-Prot
Match: GDL68_ARATH (GDSL esterase/lipase At4g30140 OS=Arabidopsis thaliana GN=At4g30140 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.0e-14
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 1

Query: 8  VVLGVVLALAALS--AHTEAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGIDFPTHRP 67
          ++L  V A+AA++   H +    +FVFGDS+ DNGNNN L T A+ +  PYGID+    P
Sbjct: 11 IILATVFAVAAVAPAVHGQQTPCYFVFGDSVFDNGNNNALNTKAKVNYLPYGIDY-FQGP 70

Query: 68 TGRFSNGLNIPDYISWV---SNSVPSF 90
          TGRFSNG NIPD I+ +   +N +P F
Sbjct: 71 TGRFSNGRNIPDVIAELAGFNNPIPPF 96

BLAST of Cla002186 vs. TrEMBL
Match: A0A0A0M3C0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665920 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-33
Identity = 73/80 (91.25%), Postives = 76/80 (95.00%), Query Frame = 1

Query: 1  MAARLSVVVLGVVLALAALSAHTEAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGIDF 60
          MA  LSVV+LGVVLALAAL+A  EAGR+FFVFGDSLVDNGNNNYLATTARADSYPYGIDF
Sbjct: 1  MAPPLSVVILGVVLALAALTAQAEAGRSFFVFGDSLVDNGNNNYLATTARADSYPYGIDF 60

Query: 61 PTHRPTGRFSNGLNIPDYIS 81
          PTHRPTGRFSNGLNIPDYIS
Sbjct: 61 PTHRPTGRFSNGLNIPDYIS 80

BLAST of Cla002186 vs. TrEMBL
Match: A0A061F185_THECC (Li-tolerant lipase 1 isoform 1 OS=Theobroma cacao GN=TCM_026119 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.3e-26
Identity = 60/87 (68.97%), Postives = 70/87 (80.46%), Query Frame = 1

Query: 5  LSVVVLGVVLALAALSAHTEAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGIDFPTHR 64
          +S ++LG++L L  ++   EA RAFFVFGDSLVDNGNNNYLATTARAD+YPYGID+PTHR
Sbjct: 8  ISWMILGLLLTLGNVAPQAEAARAFFVFGDSLVDNGNNNYLATTARADAYPYGIDYPTHR 67

Query: 65 PTGRFSNGLNIPDYISWVSNSVPSFYY 92
           TGRFSNGLNIPD IS    S P+  Y
Sbjct: 68 ATGRFSNGLNIPDLISEQIGSEPTLPY 94

BLAST of Cla002186 vs. TrEMBL
Match: A0A067EF15_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017684mg PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 62/84 (73.81%), Postives = 69/84 (82.14%), Query Frame = 1

Query: 9  VLGVVLALAALSAHT-EAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGIDFPTHRPTG 68
          +LG+V+AL AL+    EA RAFFVFGDSLVDNGNNNYLATTARADS PYGID+PT RPTG
Sbjct: 12 ILGLVMALGALAPQAAEAARAFFVFGDSLVDNGNNNYLATTARADSPPYGIDYPTRRPTG 71

Query: 69 RFSNGLNIPDYISWVSNSVPSFYY 92
          RFSNGLNIPD+IS    S P+  Y
Sbjct: 72 RFSNGLNIPDFISQHIGSEPTLPY 95

BLAST of Cla002186 vs. TrEMBL
Match: V4TXR3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020515mg PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 62/84 (73.81%), Postives = 69/84 (82.14%), Query Frame = 1

Query: 9   VLGVVLALAALSAHT-EAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGIDFPTHRPTG 68
           +LG+V+AL AL+    EA RAFFVFGDSLVDNGNNNYLATTARADS PYGID+PT RPTG
Sbjct: 36  ILGLVMALGALAPQAAEAARAFFVFGDSLVDNGNNNYLATTARADSPPYGIDYPTRRPTG 95

Query: 69  RFSNGLNIPDYISWVSNSVPSFYY 92
           RFSNGLNIPD+IS    S P+  Y
Sbjct: 96  RFSNGLNIPDFISQHIGSEPTLPY 119

BLAST of Cla002186 vs. TrEMBL
Match: A0A067EBP6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017684mg PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 62/84 (73.81%), Postives = 69/84 (82.14%), Query Frame = 1

Query: 9  VLGVVLALAALSAHT-EAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGIDFPTHRPTG 68
          +LG+V+AL AL+    EA RAFFVFGDSLVDNGNNNYLATTARADS PYGID+PT RPTG
Sbjct: 12 ILGLVMALGALAPQAAEAARAFFVFGDSLVDNGNNNYLATTARADSPPYGIDYPTRRPTG 71

Query: 69 RFSNGLNIPDYISWVSNSVPSFYY 92
          RFSNGLNIPD+IS    S P+  Y
Sbjct: 72 RFSNGLNIPDFISQHIGSEPTLPY 95

BLAST of Cla002186 vs. NCBI nr
Match: gi|449449587|ref|XP_004142546.1| (PREDICTED: GDSL esterase/lipase At5g33370-like [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.8e-33
Identity = 73/80 (91.25%), Postives = 76/80 (95.00%), Query Frame = 1

Query: 1  MAARLSVVVLGVVLALAALSAHTEAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGIDF 60
          MA  LSVV+LGVVLALAAL+A  EAGR+FFVFGDSLVDNGNNNYLATTARADSYPYGIDF
Sbjct: 1  MAPPLSVVILGVVLALAALTAQAEAGRSFFVFGDSLVDNGNNNYLATTARADSYPYGIDF 60

Query: 61 PTHRPTGRFSNGLNIPDYIS 81
          PTHRPTGRFSNGLNIPDYIS
Sbjct: 61 PTHRPTGRFSNGLNIPDYIS 80

BLAST of Cla002186 vs. NCBI nr
Match: gi|700211635|gb|KGN66731.1| (hypothetical protein Csa_1G665920 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.8e-33
Identity = 73/80 (91.25%), Postives = 76/80 (95.00%), Query Frame = 1

Query: 1  MAARLSVVVLGVVLALAALSAHTEAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGIDF 60
          MA  LSVV+LGVVLALAAL+A  EAGR+FFVFGDSLVDNGNNNYLATTARADSYPYGIDF
Sbjct: 1  MAPPLSVVILGVVLALAALTAQAEAGRSFFVFGDSLVDNGNNNYLATTARADSYPYGIDF 60

Query: 61 PTHRPTGRFSNGLNIPDYIS 81
          PTHRPTGRFSNGLNIPDYIS
Sbjct: 61 PTHRPTGRFSNGLNIPDYIS 80

BLAST of Cla002186 vs. NCBI nr
Match: gi|659086095|ref|XP_008443761.1| (PREDICTED: GDSL esterase/lipase At5g33370-like isoform X1 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 8.8e-33
Identity = 74/81 (91.36%), Postives = 76/81 (93.83%), Query Frame = 1

Query: 1  MAARLSVVVLGVVLA-LAALSAHTEAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGID 60
          MA RLSV +LGVVLA LAAL+A  EAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGID
Sbjct: 1  MAPRLSVAILGVVLAILAALTAQAEAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGID 60

Query: 61 FPTHRPTGRFSNGLNIPDYIS 81
          FPTHRPTGRFSNGLNIPDYIS
Sbjct: 61 FPTHRPTGRFSNGLNIPDYIS 81

BLAST of Cla002186 vs. NCBI nr
Match: gi|659086097|ref|XP_008443762.1| (PREDICTED: GDSL esterase/lipase At5g33370-like isoform X2 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 8.8e-33
Identity = 74/81 (91.36%), Postives = 76/81 (93.83%), Query Frame = 1

Query: 1  MAARLSVVVLGVVLA-LAALSAHTEAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGID 60
          MA RLSV +LGVVLA LAAL+A  EAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGID
Sbjct: 1  MAPRLSVAILGVVLAILAALTAQAEAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGID 60

Query: 61 FPTHRPTGRFSNGLNIPDYIS 81
          FPTHRPTGRFSNGLNIPDYIS
Sbjct: 61 FPTHRPTGRFSNGLNIPDYIS 81

BLAST of Cla002186 vs. NCBI nr
Match: gi|1009129932|ref|XP_015882031.1| (PREDICTED: GDSL esterase/lipase At5g33370-like [Ziziphus jujuba])

HSP 1 Score: 131.7 bits (330), Expect = 6.5e-28
Identity = 64/91 (70.33%), Postives = 72/91 (79.12%), Query Frame = 1

Query: 1  MAARLSVVVLGVVLALAALSAHTEAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGIDF 60
          MA  L +++ G+V+AL   S+  EA RAFFVFGDSLVDNGNNNYLATTARADSYPYGID+
Sbjct: 1  MANSLVLLIFGLVMALGRFSSQAEAARAFFVFGDSLVDNGNNNYLATTARADSYPYGIDY 60

Query: 61 PTHRPTGRFSNGLNIPDYISWVSNSVPSFYY 92
          PT RPTGRFSNGLNIPD+IS    S P   Y
Sbjct: 61 PTRRPTGRFSNGLNIPDFISQRIGSEPLLPY 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GDL79_ARATH2.2e-2375.00GDSL esterase/lipase At5g33370 OS=Arabidopsis thaliana GN=At5g33370 PE=2 SV=1[more]
GDL67_ARATH3.7e-2366.67GDSL esterase/lipase At4g28780 OS=Arabidopsis thaliana GN=At4g28780 PE=2 SV=1[more]
GDL77_ARATH8.2e-2379.10GDSL esterase/lipase At5g18430 OS=Arabidopsis thaliana GN=At5g18430 PE=2 SV=1[more]
LTL1_ARATH2.4e-2288.89GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana GN=LTL1 PE=2 SV=1[more]
GDL68_ARATH7.0e-1448.28GDSL esterase/lipase At4g30140 OS=Arabidopsis thaliana GN=At4g30140 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0M3C0_CUCSA1.2e-3391.25Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665920 PE=4 SV=1[more]
A0A061F185_THECC3.3e-2668.97Li-tolerant lipase 1 isoform 1 OS=Theobroma cacao GN=TCM_026119 PE=4 SV=1[more]
A0A067EF15_CITSI1.2e-2573.81Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017684mg PE=4 SV=1[more]
V4TXR3_9ROSI1.2e-2573.81Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020515mg PE=4 SV=1[more]
A0A067EBP6_CITSI1.2e-2573.81Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017684mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449449587|ref|XP_004142546.1|1.8e-3391.25PREDICTED: GDSL esterase/lipase At5g33370-like [Cucumis sativus][more]
gi|700211635|gb|KGN66731.1|1.8e-3391.25hypothetical protein Csa_1G665920 [Cucumis sativus][more]
gi|659086095|ref|XP_008443761.1|8.8e-3391.36PREDICTED: GDSL esterase/lipase At5g33370-like isoform X1 [Cucumis melo][more]
gi|659086097|ref|XP_008443762.1|8.8e-3391.36PREDICTED: GDSL esterase/lipase At5g33370-like isoform X2 [Cucumis melo][more]
gi|1009129932|ref|XP_015882031.1|6.5e-2870.33PREDICTED: GDSL esterase/lipase At5g33370-like [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0052889 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene
biological_process GO:0042538 hyperosmotic salinity response
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0010226 response to lithium ion
biological_process GO:0009751 response to salicylic acid
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0052887 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity
molecular_function GO:0052886 9,9'-dicis-carotene:quinone oxidoreductase activity
molecular_function GO:0016788 hydrolase activity, acting on ester bonds

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002186Cla002186.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22835ZINC FINGER FYVE DOMAIN CONTAINING PROTEINcoord: 1..80
score: 6.4
NoneNo IPR availablePANTHERPTHR22835:SF160GDSL ESTERASE/LIPASE LTL1coord: 1..80
score: 6.4