Cla002129 (gene) Watermelon (97103) v1

Overview
NameCla002129
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 11532605 .. 11532814 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGAATTGAAAGGGTCGTCAACTTCACAAAGGAGTCAACCACTTTCAGAGGAAGAAATATGCGACATTGTGTTGGGAAGACAGCCCGGACATGTTAAAGGTCTCGGTTGGAGTCCGAAACCAAAGCCAAGAAAGTATAGCTCCTCATCATCGATATCCTCTATGCAACAGAAAGAGTACGAACAAGCAATTGAGATAAAAATTTGA

mRNA sequence

ATGAGGGAATTGAAAGGGTCGTCAACTTCACAAAGGAGTCAACCACTTTCAGAGGAAGAAATATGCGACATTGTGTTGGGAAGACAGCCCGGACATGTTAAAGGTCTCGGTTGGAGTCCGAAACCAAAGCCAAGAAAGTATAGCTCCTCATCATCGATATCCTCTATGCAACAGAAAGAGTACGAACAAGCAATTGAGATAAAAATTTGA

Coding sequence (CDS)

ATGAGGGAATTGAAAGGGTCGTCAACTTCACAAAGGAGTCAACCACTTTCAGAGGAAGAAATATGCGACATTGTGTTGGGAAGACAGCCCGGACATGTTAAAGGTCTCGGTTGGAGTCCGAAACCAAAGCCAAGAAAGTATAGCTCCTCATCATCGATATCCTCTATGCAACAGAAAGAGTACGAACAAGCAATTGAGATAAAAATTTGA

Protein sequence

MRELKGSSTSQRSQPLSEEEICDIVLGRQPGHVKGLGWSPKPKPRKYSSSSSISSMQQKEYEQAIEIKI
Homology
[Close]
BLAST of Cla002129 vs. NCBI nr
Match: gi|659071971|ref|XP_008462851.1| (PREDICTED: uncharacterized protein LOC103501125 isoform X2 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 2.9e-09
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 1 

Query: 1  MRELKGSSTSQRSQPLSEEEICDIVLGRQPGHVKGLGWSPKPKPRKYSSSSSISSMQQKE 60
          M ELK     + SQPL E+EICD VLGR+PG+ KGLG  PKPK R+ SS++S S+   + 
Sbjct: 1  MLELKSQPIPKGSQPLFEDEICDQVLGRRPGYSKGLGCGPKPKARRTSSANSSSTSSSQS 60

Query: 61 YEQAIEIK 69
           ++ IE++
Sbjct: 61 NQKEIELQ 68

[Close]
BLAST of Cla002129 vs. NCBI nr
Match: gi|659082629|ref|XP_008441946.1| (PREDICTED: GDSL esterase/lipase At1g33811-like [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-06
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 1 

Query: 1   MRELKGSSTSQRSQPLSEEEICD-IVLGRQPGHVKGLGWSPKPKPRKYSSSSSISSM--Q 60
           M EL+   T + SQPL  +EIC+ IVL R+P + KGLG  P PK RK +S SS S+M  Q
Sbjct: 243 MLELQPQPTPEGSQPLYGDEICETIVLSRRPSYSKGLGCGPNPKSRKMTSVSSSSTMFSQ 302

Query: 61  QKEYE 63
            +EYE
Sbjct: 303 AREYE 307

The following BLAST results are available for this feature:
BLAST of Cla002129 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659071971|ref|XP_008462851.1|2.9e-0950.00PREDICTED: uncharacterized protein LOC103501125 isoform X2 [Cucumis melo][more]
gi|659082629|ref|XP_008441946.1|5.2e-0652.31PREDICTED: GDSL esterase/lipase At1g33811-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002129Cla002129.1mRNA