Cla002121 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002121
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr2 : 15329462 .. 15329854 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAAAGTCACTCCGTCGAGATTAATGATTTCCCACTGGAAAACTCCAACCAATTTTCTCCCGACGCACATTACCTAGCATCGGGAAAAGTGACTTCTCCCTACGCCAAAGATTGCTTTATGGCGTCGGGAAAATGCCTTCTCCCGACGGTTATGCGTTGGGACAAAACCGTTCTCCCGACGGGTATGCGTCGGGAAAAACGCGTTCCCCCGACGGGTATGCGTTGGGAGAAAAGTGTTCCCCCGACGGGTATGCGTCGGGAGGAACGCGTTCTCCCCACAGTCATGCGTCGGGACAAACGTGTCTCCCCACGGTCATGCGTCGAGAGCAACGCGTTATCCCCACGGTTATGCGTCGGGAGAAACGCTTTCTCCTCCCGACGCGCATAA

mRNA sequence

ATGGAAAAAAGTCACTCCGTCGAGATTAATGATTTCCCACTGGAAAACTCCAACCAATTTTCTCCCGACGCACATTACCTAGCATCGGGAAAAGTGACTTCTCCCTACGCCAAAGATTGCTTTATGGCGTCGGGAAAATGCCTTCTCCCGACGGTTATGCGTTGGGACAAAACCGTTCTCCCGACGGGTATGCGTCGGGAAAAACGCGTTCCCCCGACGGGTATGCGTTGGGAGAAAAGTGTTCCCCCGACGGGTATGCGTCGGGAGGAACGCGTTCTCCCCACAGTCATGCGTCGGGACAAACGTGTCTCCCCACGGTCATGCGTCGAGAGCAACGCGTTATCCCCACGGTTATGCGTCGGGAGAAACGCTTTCTCCTCCCGACGCGCATAA

Coding sequence (CDS)

ATGGAAAAAAGTCACTCCGTCGAGATTAATGATTTCCCACTGGAAAACTCCAACCAATTTTCTCCCGACGCACATTACCTAGCATCGGGAAAAGTGACTTCTCCCTACGCCAAAGATTGCTTTATGGCGTCGGGAAAATGCCTTCTCCCGACGGTTATGCGTTGGGACAAAACCGTTCTCCCGACGGGTATGCGTCGGGAAAAACGCGTTCCCCCGACGGGTATGCGTTGGGAGAAAAGTGTTCCCCCGACGGGTATGCGTCGGGAGGAACGCGTTCTCCCCACAGTCATGCGTCGGGACAAACGTGTCTCCCCACGGTCATGCGTCGAGAGCAACGCGTTATCCCCACGGTTATGCGTCGGGAGAAACGCTTTCTCCTCCCGACGCGCATAA

Protein sequence

MEKSHSVEINDFPLENSNQFSPDAHYLASGKVTSPYAKDCFMASGKCLLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSPRSCVESNALSPRLCVGRNAFSSRRA

Homology

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BLAST of Cla002121 vs. NCBI nr
Match: gi|929333628|ref|XP_014039693.1| (PREDICTED: uncharacterized protein LOC106592871 [Salmo salar])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+RW   +LPT +RR  +V PT +RW   V PT +RR  +VLPTV+RR  +V P
Sbjct: 189 ILPTVLRWIVKILPTVLRRTVKVLPTVLRWIVKVLPTVLRRIAKVLPTVLRRTVKVLP 246

[Close]

BLAST of Cla002121 vs. NCBI nr
Match: gi|929333628|ref|XP_014039693.1| (PREDICTED: uncharacterized protein LOC106592871 [Salmo salar])

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-05
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+RW   VLPT +R   +V PT +RW   V PT ++R  +VLPTV+RR  +V P
Sbjct: 266 VLPTVLRWTVKVLPTVLRWTVKVLPTVLRWIVKVLPTVLKRTVKVLPTVLRRIVKVLP 323

HSP 2 Score: 55.8 bits (133), Expect = 6.3e-05
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LP V+RW   VLPT +R   +V PT +RW   V PT ++R  +VLPTV+RR  +V P
Sbjct: 46  VLPNVLRWTVKVLPTVLRWTVKVLPTVLRWIVKVLPTVLKRTVKVLPTVLRRIVKVLP 103

HSP 3 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+RW   VLPT +R   +V PT +RW   V PT +R   +VLPTV++R  +V P
Sbjct: 255 VLPTVLRWIVKVLPTVLRWTVKVLPTVLRWTVKVLPTVLRWIVKVLPTVLKRTVKVLP 312

HSP 4 Score: 53.5 bits (127), Expect = 3.2e-04
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+RW   VLPT +RR  +V P  +RW   V PT +R   +VLPTV+R   +V P
Sbjct: 24  VLPTVLRWIVKVLPTVLRRIAKVLPNVLRWTVKVLPTVLRWTVKVLPTVLRWIVKVLP 81

HSP 5 Score: 53.5 bits (127), Expect = 3.2e-04
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+RW   VLPT +R   ++ PT +RW   + PT +RR  +VLPTV+R   +V P
Sbjct: 167 VLPTVLRWIVKVLPTVLRWIVKILPTVLRWIVKILPTVLRRTVKVLPTVLRWIVKVLP 224

HSP 6 Score: 52.8 bits (125), Expect = 5.4e-04
Identity = 30/69 (43.48%), Postives = 40/69 (57.97%), Query Frame = 1


Query: 48  LL-----------PTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTV 106
           +L           PTV+RW   +LPT +RR  +V PT +RW   V PT +RR  +VLPTV
Sbjct: 178 VLPTVLRWIVKILPTVLRWIVKILPTVLRRTVKVLPTVLRWIVKVLPTVLRRIAKVLPTV 237

HSP 7 Score: 52.4 bits (124), Expect = 7.0e-04
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+RW   VLPT +R   +V PT +R    V PT +RR  +VLPTV+RR  +V P
Sbjct: 112 VLPTVLRWIVKVLPTVLRWIVKVLPTVLRCIVKVLPTVLRRIVKVLPTVLRRTVKVLP 169

HSP 8 Score: 52.0 bits (123), Expect = 9.2e-04
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+RW   VLPT +R   +V PT +RW   V PT +R   +VLPTV+R   +V P
Sbjct: 244 VLPTVLRWIVKVLPTVLRWIVKVLPTVLRWTVKVLPTVLRWTVKVLPTVLRWIVKVLP 301

HSP 9 Score: 51.2 bits (121), Expect = 1.6e-03
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+RW   VLPT +R   +V PT ++    V PT +RR  +VLPTV++R  +V P
Sbjct: 57  VLPTVLRWTVKVLPTVLRWIVKVLPTVLKRTVKVLPTVLRRIVKVLPTVLKRTVKVLP 114

HSP 10 Score: 50.4 bits (119), Expect = 2.7e-03
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+RW   VLPT ++R  +V PT +R    V PT ++R  +VLPTV+R   +V P
Sbjct: 68  VLPTVLRWIVKVLPTVLKRTVKVLPTVLRRIVKVLPTVLKRTVKVLPTVLRWIVKVLP 125

HSP 11 Score: 50.1 bits (118), Expect = 3.5e-03
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+R    VLPT +RR  +V PT +RW   V PT +R   +VLPTV+R   +V P
Sbjct: 222 VLPTVLRRIAKVLPTVLRRTVKVLPTVLRWIVKVLPTVLRWIVKVLPTVLRWTVKVLP 279

HSP 12 Score: 49.3 bits (116), Expect = 5.9e-03
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+RW   VLPT +RR  +V PT +R    V PT +R   +VLPTV+R   +V P
Sbjct: 211 VLPTVLRWIVKVLPTVLRRIAKVLPTVLRRTVKVLPTVLRWIVKVLPTVLRWIVKVLP 268

HSP 13 Score: 48.9 bits (115), Expect = 7.8e-03
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+RW   VLPT +R   +V PT +R    V PT +RR  +VLPTV+R   +V P
Sbjct: 123 VLPTVLRWIVKVLPTVLRCIVKVLPTVLRRIVKVLPTVLRRTVKVLPTVLRWIVKVLP 180

HSP 14 Score: 48.9 bits (115), Expect = 7.8e-03
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+R    VLPT +R   +V PT +RW   + PT +R   ++LPTV+RR  +V P
Sbjct: 156 VLPTVLRRTVKVLPTVLRWIVKVLPTVLRWIVKILPTVLRWIVKILPTVLRRTVKVLP 213

HSP 15 Score: 48.9 bits (115), Expect = 7.8e-03
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSPRS 107
           +LPTV+RW   VLPT +R   +V PT ++    V PT +RR  +VLPTV+R   +V P  
Sbjct: 277 VLPTVLRWTVKVLPTVLRWIVKVLPTVLKRTVKVLPTVLRRIVKVLPTVLRCIVKVLPTG 336

Query: 108 -CVES 112
            C+ S
Sbjct: 337 YCIVS 341

HSP 16 Score: 48.1 bits (113), Expect = 1.3e-02
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+R    VLPT +RR  +V PT +RW   V PT +R   ++LPTV+R   ++ P
Sbjct: 145 VLPTVLRRIVKVLPTVLRRTVKVLPTVLRWIVKVLPTVLRWIVKILPTVLRWIVKILP 202

HSP 17 Score: 47.8 bits (112), Expect = 1.7e-02
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV++    VLPT +R   +V PT +RW   V PT +R   +VLPTV+RR  +V P
Sbjct: 101 VLPTVLKRTVKVLPTVLRWIVKVLPTVLRWIVKVLPTVLRCIVKVLPTVLRRIVKVLP 158

HSP 18 Score: 47.8 bits (112), Expect = 1.7e-02
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+R    VLPT ++R  +V PT +RW   V PT +R   +VLPTV+R   +V P
Sbjct: 90  VLPTVLRRIVKVLPTVLKRTVKVLPTVLRWIVKVLPTVLRWIVKVLPTVLRCIVKVLP 147

HSP 19 Score: 47.4 bits (111), Expect = 2.3e-02
Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+R    VLPT +R   +V PT +RW   V PT +R   +VLPTV+R   +V P
Sbjct: 233 VLPTVLRRTVKVLPTVLRWIVKVLPTVLRWIVKVLPTVLRWTVKVLPTVLRWTVKVLP 290

HSP 20 Score: 45.1 bits (105), Expect = 1.1e-01
Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+R    VLPT +R   +V PT +R    V PT +RR  +VLPTV+R   +V P
Sbjct: 200 ILPTVLRRTVKVLPTVLRWIVKVLPTVLRRIAKVLPTVLRRTVKVLPTVLRWIVKVLP 257

HSP 21 Score: 45.1 bits (105), Expect = 1.1e-01
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+RW   VLPT +R   +V PT +R    V P  +R   +VLPTV+R   +V P
Sbjct: 13  VLPTVLRWIVKVLPTVLRWIVKVLPTVLRRIAKVLPNVLRWTVKVLPTVLRWTVKVLP 70

HSP 22 Score: 43.5 bits (101), Expect = 3.3e-01
Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV+R    VLPT +RR  +V PT +R    V PT +R   +VLPTV+R   ++ P
Sbjct: 134 VLPTVLRCIVKVLPTVLRRIVKVLPTVLRRTVKVLPTVLRWIVKVLPTVLRWIVKILP 191

HSP 23 Score: 42.0 bits (97), Expect = 9.5e-01
Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 1


Query: 48  LLPTVMRWDKTVLPTGMRREKRVPPTGMRWEKSVPPTGMRREERVLPTVMRRDKRVSP 106
           +LPTV++    VLPT +RR  +V PT ++    V PT +R   +VLPTV+R   +V P
Sbjct: 79  VLPTVLKRTVKVLPTVLRRIVKVLPTVLKRTVKVLPTVLRWIVKVLPTVLRWIVKVLP 136

The following BLAST results are available for this feature:

BLAST of Cla002121 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|929333628\|ref\|XP_014039693.1\|	1.2e-06	51.72	PREDICTED: uncharacterized protein LOC106592871 [Salmo salar]	[more]
gi\|929333628\|ref\|XP_014039693.1\|	1.7e-05	50.00	PREDICTED: uncharacterized protein LOC106592871 [Salmo salar]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002121	Cla002121.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002121	Watermelon (97103) v1	wmwmB005
Cla002121	Watermelon (Charleston Gray)	wcgwmB216