Cla002073 (gene) Watermelon (97103) v1

Overview
NameCla002073
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr2 : 17376273 .. 17376719 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTGGAGGCAATTTTGTGAAAGTGTCCAAGTCATCGAACCCACCGCCATAGAGGCATTTTACGAAGAAACCATTCACCGCAAGGCACACAAAGTCAAAGTTGAAGATGAGGTGATTTCCTTTGAGCCTCAGGTGATCAACGAGTTGTTTGATCTTCCCGACATCGCGGCGGCAGAGGGTAATAGAATAATGTCGACGCCTACAGAAGCCAAAATGAATGACGCCCTCACAACCATCGCCAAACCGGCGTCAGAGTGGAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGGCCAACCTGTGGCTTTACTTCATCAAGCGATCGCTGATCCCCACAACGCGTGATGCCTCAATTTCAAGGAACTGTGCCATGGTCATTTACTGCATCATGCGAGGAATTCGGCTAGACGTGGGACGCATCATTGCCCCATAG

mRNA sequence

ATGGGTTGGAGGCAATTTTGTGAAAGTGTCCAAGTCATCGAACCCACCGCCATAGAGGCATTTTACGAAGAAACCATTCACCGCAAGGCACACAAAGTCAAAGTTGAAGATGAGGTGATTTCCTTTGAGCCTCAGGTGATCAACGAGTTGTTTGATCTTCCCGACATCGCGGCGGCAGAGGGTAATAGAATAATGTCGACGCCTACAGAAGCCAAAATGAATGACGCCCTCACAACCATCGCCAAACCGGCGTCAGAGTGGAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGGCCAACCTGTGGCTTTACTTCATCAAGCGATCGCTGATCCCCACAACGCGTGATGCCTCAATTTCAAGGAACTGTGCCATGGTCATTTACTGCATCATGCGAGGAATTCGGCTAGACGTGGGACGCATCATTGCCCCATAG

Coding sequence (CDS)

ATGGGTTGGAGGCAATTTTGTGAAAGTGTCCAAGTCATCGAACCCACCGCCATAGAGGCATTTTACGAAGAAACCATTCACCGCAAGGCACACAAAGTCAAAGTTGAAGATGAGGTGATTTCCTTTGAGCCTCAGGTGATCAACGAGTTGTTTGATCTTCCCGACATCGCGGCGGCAGAGGGTAATAGAATAATGTCGACGCCTACAGAAGCCAAAATGAATGACGCCCTCACAACCATCGCCAAACCGGCGTCAGAGTGGAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGGCCAACCTGTGGCTTTACTTCATCAAGCGATCGCTGATCCCCACAACGCGTGATGCCTCAATTTCAAGGAACTGTGCCATGGTCATTTACTGCATCATGCGAGGAATTCGGCTAGACGTGGGACGCATCATTGCCCCATAG

Protein sequence

MGWRQFCESVQVIEPTAIEAFYEETIHRKAHKVKVEDEVISFEPQVINELFDLPDIAAAEGNRIMSTPTEAKMNDALTTIAKPASEWNXXXXXXXXXXXXXKANLWLYFIKRSLIPTTRDASISRNCAMVIYCIMRGIRLDVGRIIAP
Homology
[Close]
BLAST of Cla002073 vs. TrEMBL
Match: A0A061FAJ6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_032752 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.4e-07
Identity = 34/148 (22.97%), Postives = 68/148 (45.95%), Query Frame = 1 

Query: 3   WRQFCESVQVIEPTAIEAFYEETIHRKAHKVKVEDEVISFEPQVINELFDLPDIAAAEGN 62
           W QFC    V+    +  FY   +        V  + + F  Q INEL   P+I   E  
Sbjct: 62  WHQFCHQPNVVVVLVVREFYATVVEHVDGVAFVRGKHVPFHSQAINELLRTPNIENDEYG 121

Query: 63  RIMSTPTEAKMNDALTTIAKPASEW---NXXXXXXXXXXXXXKANLWLYFIKRSLIPTTR 122
           + +    +   N+ ++T+    ++W   +             +  +WL+F+   L+P+T 
Sbjct: 122 QYLGDHQDC--NEIISTLCIEGAQWKTSHGEPVSFKRSVMKKELKVWLHFVAARLLPSTH 181

Query: 123 DASISRNCAMVIYCIMRGIRLDVGRIIA 148
            + ++++ A++IY I+    +DVG++I+
Sbjct: 182 ISDVTKDRAVLIYAIVTHKSIDVGKVIS 207

[Close]
BLAST of Cla002073 vs. NCBI nr
Match: gi|848885002|ref|XP_012842756.1| (PREDICTED: uncharacterized protein LOC105962958 [Erythranthe guttata])

HSP 1 Score: 62.4 bits (150), Expect = 7.7e-07
Identity = 35/141 (24.82%), Postives = 63/141 (44.68%), Query Frame = 1 

Query: 2   GWRQFCESVQVIEPTAIEAFYEETIHRKAH-KVKVEDEVISFEPQVINELFDLPDIAAAE 61
           GW+ F E       + +  F+    H   +  VKV D V+ F+P  IN  F+LPD++   
Sbjct: 84  GWQSFIEDPGEANVSMVREFFANAAHSDNNTSVKVRDVVVRFDPAHINNYFNLPDLSLEG 143

Query: 62  GNRIMSTPTEAKMNDALTTIAKPASEWNXXXXXXXXXXXXXKANLWLYFIKRSLIPTTRD 121
            N +     +   +D + T+    + W              +A  W YF+   L+PT+  
Sbjct: 144 YNTVKK---KTIFDDLIRTLCPRGTSWKGEKKSFNRSELSKEAKAWAYFVSARLLPTSAV 203

Query: 122 ASISRNCAMVIYCIMRGIRLD 142
           +++     ++IY I+ GI ++
Sbjct: 204 STVLPPRLLLIYAIIIGIDIN 221

[Close]
BLAST of Cla002073 vs. NCBI nr
Match: gi|590612524|ref|XP_007022408.1| (Uncharacterized protein TCM_032752 [Theobroma cacao])

HSP 1 Score: 62.4 bits (150), Expect = 7.7e-07
Identity = 34/148 (22.97%), Postives = 68/148 (45.95%), Query Frame = 1 

Query: 3   WRQFCESVQVIEPTAIEAFYEETIHRKAHKVKVEDEVISFEPQVINELFDLPDIAAAEGN 62
           W QFC    V+    +  FY   +        V  + + F  Q INEL   P+I   E  
Sbjct: 62  WHQFCHQPNVVVVLVVREFYATVVEHVDGVAFVRGKHVPFHSQAINELLRTPNIENDEYG 121

Query: 63  RIMSTPTEAKMNDALTTIAKPASEW---NXXXXXXXXXXXXXKANLWLYFIKRSLIPTTR 122
           + +    +   N+ ++T+    ++W   +             +  +WL+F+   L+P+T 
Sbjct: 122 QYLGDHQDC--NEIISTLCIEGAQWKTSHGEPVSFKRSVMKKELKVWLHFVAARLLPSTH 181

Query: 123 DASISRNCAMVIYCIMRGIRLDVGRIIA 148
            + ++++ A++IY I+    +DVG++I+
Sbjct: 182 ISDVTKDRAVLIYAIVTHKSIDVGKVIS 207

[Close]
BLAST of Cla002073 vs. NCBI nr
Match: gi|848863901|ref|XP_012832708.1| (PREDICTED: uncharacterized protein LOC105953582 [Erythranthe guttata])

HSP 1 Score: 62.4 bits (150), Expect = 7.7e-07
Identity = 35/141 (24.82%), Postives = 63/141 (44.68%), Query Frame = 1 

Query: 2   GWRQFCESVQVIEPTAIEAFYEETIHRKAH-KVKVEDEVISFEPQVINELFDLPDIAAAE 61
           GW+ F E       + +  F+    H   +  VKV D V+ F+P  IN  F+LPD++   
Sbjct: 84  GWQSFIEDPGEANVSMVREFFANAAHSDNNTSVKVRDVVVRFDPAHINNYFNLPDLSLEG 143

Query: 62  GNRIMSTPTEAKMNDALTTIAKPASEWNXXXXXXXXXXXXXKANLWLYFIKRSLIPTTRD 121
            N +     +   +D + T+    + W              +A  W YF+   L+PT+  
Sbjct: 144 YNTVKK---KTIFDDLIRTLCPRGTSWKEEKKSFNRSELSKEAKAWAYFVSARLLPTSAV 203

Query: 122 ASISRNCAMVIYCIMRGIRLD 142
           +++     ++IY I+ GI ++
Sbjct: 204 STVLPPRLLLIYAIIIGIDIN 221

The following BLAST results are available for this feature:
BLAST of Cla002073 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061FAJ6_THECC5.4e-0722.97Uncharacterized protein OS=Theobroma cacao GN=TCM_032752 PE=4 SV=1[more]
BLAST of Cla002073 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|848885002|ref|XP_012842756.1|7.7e-0724.82PREDICTED: uncharacterized protein LOC105962958 [Erythranthe guttata][more]
gi|590612524|ref|XP_007022408.1|7.7e-0722.97Uncharacterized protein TCM_032752 [Theobroma cacao][more]
gi|848863901|ref|XP_012832708.1|7.7e-0724.82PREDICTED: uncharacterized protein LOC105953582 [Erythranthe guttata][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002073Cla002073.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla002073Watermelon (Charleston Gray)wcgwmB199