Cla002058 (gene) Watermelon (97103) v1

Overview
NameCla002058
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr11 : 356949 .. 357737 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCATCAAGAAAACGTTTCTTATTAAAACCCTATTTACATTAGGGTTTGGAAACTCAAATCTTCATAAGATCCGTCGCCGCCTCTTCATATCCATTCCTTTGAGTTCGCCGTCGCCGAAAGCATTAACCAGCTGTATCGTTAGCCGTTTGCTGCTGGTTCCTGAAGGATCGTCAACCTCCGCCGCTACCGGTTCGTGGTCTCATCTTTCCGCCGCGCCTCTGCAGATCCATCCGCCGCCTTCTCGATCTCGATCATTCCGCCACCGCGTCGTGCAGACCCGTCCGCCGCCGCATTGCGTAGATCCGTCCCCGACGCCACGTTGTGCAGATCCGTCCCGCAGCCGCATCGTGCAAATCCGTCCTCGCTGCCGCGTCGAGCAGATCCACGAATCACCGCATTGCGCAGATCCACGAACACCGCATCGTGTAGATCCGTCCCTGGCACCGCGTCGAGCAGATCCACGAACACCTCATCGCGTAGATCCGTCCTCGCCGCCGCGTCGAGCAGATCCACGAACACCGCATCGCGCAGATCCATCCCTGGCGCCGCATCGAGCAAATCCACGAACCGCATCCCGTAGATCCGTCCCCGCCGCCGCATCGAGCAGATCCACGAACGGCCGTCGCATTGTGCAAGAACTTCTGCCGCCGCATCGTGCAGATCTGTTCGTCGTCGCCTCGTGCATATCCTTCCGCCGCCGCCTCTGCATATCCTTTCTCGCCGCCGCCGGTTCGTGGTATACACCCGTCCCCCCGCCAGTTCGTGGTAGTTTTTGGGTTCGCTAG

mRNA sequence

ATGCCCATCAAGAAAACGTTTCTTATTAAAACCCTATTTACATTAGGGTTTGGAAACTCAAATCTTCATAAGATCCGTCGCCGCCTCTTCATATCCATTCCTTTGAGTTCGCCGTCGCCGAAAGCATTAACCAGCTGTATCGTTAGCCGTTTGCTGCTGGTTCCTGAAGGATCGTCAACCTCCGCCGCTACCGGTTCGTGGTCTCATCTTTCCGCCGCGCCTCTGCAGATCCATCCGCCGCCTTCTCGATCTCGATCATTCCGCCACCGCGTCGTGCAGACCCGTCCGCCGCCGCATTGCGTAGATCCGTCCCCGACGCCACGTTGTGCAGATCCGTCCCGCAGCCGCATCGTGCAAATCCGTCCTCGCTGCCGCGTCGAGCAGATCCACGAATCACCGCATTGCGCAGATCCACGAACACCGCATCGTGTAGATCCGTCCCTGGCACCGCGTCGAGCAGATCCACGAACACCTCATCGCGTAGATCCGTCCTCGCCGCCGCGTCGAGCAGATCCACGAACACCGCATCGCGCAGATCCATCCCTGGCGCCGCATCGAGCAAATCCACGAACCGCATCCCGTAGATCCGTCCCCGCCGCCGCATCGAGCAGATCCACGAACGGCCGTCGCATTGTGCAAGAACTTCTGCCGCCGCATCGTGCAGATCTGTTCGTCGTCGCCTCGTGCATATCCTTCCGCCGCCGCCTCTGCATATCCTTTCTCGCCGCCGCCGGTTCGTGGTATACACCCGTCCCCCCGCCAGTTCGTGGTAGTTTTTGGGTTCGCTAG

Coding sequence (CDS)

ATGCCCATCAAGAAAACGTTTCTTATTAAAACCCTATTTACATTAGGGTTTGGAAACTCAAATCTTCATAAGATCCGTCGCCGCCTCTTCATATCCATTCCTTTGAGTTCGCCGTCGCCGAAAGCATTAACCAGCTGTATCGTTAGCCGTTTGCTGCTGGTTCCTGAAGGATCGTCAACCTCCGCCGCTACCGGTTCGTGGTCTCATCTTTCCGCCGCGCCTCTGCAGATCCATCCGCCGCCTTCTCGATCTCGATCATTCCGCCACCGCGTCGTGCAGACCCGTCCGCCGCCGCATTGCGTAGATCCGTCCCCGACGCCACGTTGTGCAGATCCGTCCCGCAGCCGCATCGTGCAAATCCGTCCTCGCTGCCGCGTCGAGCAGATCCACGAATCACCGCATTGCGCAGATCCACGAACACCGCATCGTGTAGATCCGTCCCTGGCACCGCGTCGAGCAGATCCACGAACACCTCATCGCGTAGATCCGTCCTCGCCGCCGCGTCGAGCAGATCCACGAACACCGCATCGCGCAGATCCATCCCTGGCGCCGCATCGAGCAAATCCACGAACCGCATCCCGTAGATCCGTCCCCGCCGCCGCATCGAGCAGATCCACGAACGGCCGTCGCATTGTGCAAGAACTTCTGCCGCCGCATCGTGCAGATCTGTTCGTCGTCGCCTCGTGCATATCCTTCCGCCGCCGCCTCTGCATATCCTTTCTCGCCGCCGCCGGTTCGTGGTATACACCCGTCCCCCCGCCAGTTCGTGGTAGTTTTTGGGTTCGCTAG

Protein sequence

MPIKKTFLIKTLFTLGFGNSNLHKIRRRLFISIPLSSPSPKALTSCIVSRLLLVPEGSSTSAATGSWSHLSAAPLQIHPPPSRSRSFRHRVVQTRPPPHCVDPSPTPRCADPSRSRIVQIRPRCRVEQIHESPHCADPRTPHRVDPSLAPRRADPRTPHRVDPSSPPRRADPRTPHRADPSLAPHRANPRTASRRSVPAAASSRSTNGRRIVQELLPPHRADLFVVASCISFRRRLCISFLAAAGSWYTPVPPPVRGSFWVR
Homology
[Close]
BLAST of Cla002058 vs. Swiss-Prot
Match: YM012_HUMAN (Uncharacterized protein DKFZp434B061 OS=Homo sapiens PE=2 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 4.1e-11
Identity = 66/199 (33.17%), Postives = 82/199 (41.21%), Query Frame = 1 

Query: 64  TGSWSHLSAAPLQIHP---PPSRSRSFRHRVVQTRPPPHCVDPSPTPRCADPSRSRIVQI 123
           T S + L+  P +  P   PP  S    HR   TR PP     SPT R   P R+   + 
Sbjct: 163 TPSRASLTRWPPRASPTRTPPRESPRMSHRASPTRTPPRA---SPTRR---PPRASPTRT 222

Query: 124 RPRCRVEQIHESPHCADPRTPHRVDPSLAPRRADPR-TPHRVDPSSPPRRADPRTPHRAD 183
            PR   E +  S   +  R P R  P+  P RA P  +P R  P +PPR A PRTP RA 
Sbjct: 223 PPR---ESLRTSHRASPTRMPPRASPTRRPPRASPTGSPPRASPMTPPR-ASPRTPPRAS 282

Query: 184 PSLAPHRANPRTASRRSVPAAASSRSTNGRRIVQELLPPHRADLFVVASCISFRRRLCIS 243
           P+  P R     AS    P+ AS  +T           P RA L  + S +S  R    +
Sbjct: 283 PTTTPSR-----ASLTRTPSWASPTTT-----------PSRASLMKMESTVSITRTPPRA 335

Query: 244 FLAAAGSWYTPVPPPVRGS 259
                 S  +P   P R S
Sbjct: 343 SPTGTPSRASPTGTPSRAS 335


HSP 2 Score: 57.0 bits (136), Expect = 3.6e-07
Identity = 34/76 (44.74%), Postives = 38/76 (50.00%), Query Frame = 1 

Query: 139 RTPHRVDPSLAPRRADPRTPHRVDPSSPPRRADPR-TPHRADPSLAPHRAN----PRTAS 198
           RTP R  P+  P RA PRTP R  P+    RA P  +PHRA P   P RA+    P TAS
Sbjct: 64  RTPPRASPTRKPPRASPRTPSRASPTRRLPRASPMGSPHRASPMRTPPRASPTGTPSTAS 123

Query: 199 RRSVPAAASSRSTNGR 210
               P++AS   T  R
Sbjct: 124 PTGTPSSASPTGTPPR 139


HSP 3 Score: 55.5 bits (132), Expect = 1.0e-06
Identity = 55/168 (32.74%), Postives = 64/168 (38.10%), Query Frame = 1 

Query: 80  PPSRSRSFRHRVVQTRPPPHCVDPSPTPRCADPSRSRIVQIRPRCRVEQIHESPHCADPR 139
           PP  S    HR   TR PP     SPT R   P R+      PR        +P  A PR
Sbjct: 217 PPRESLRTSHRASPTRMPPRA---SPTRR---PPRASPTGSPPRASPM----TPPRASPR 276

Query: 140 TPHRVDPSLAPRRAD-PRTPHRVDPSS-------------------PPRRADPRTPHRAD 199
           TP R  P+  P RA   RTP    P++                   PPR +   TP RA 
Sbjct: 277 TPPRASPTTTPSRASLTRTPSWASPTTTPSRASLMKMESTVSITRTPPRASPTGTPSRAS 336

Query: 200 PSLAPHRA----NPRTASRRSVPAAASSRSTNGRRIVQELLPPHRADL 224
           P+  P RA    +P  AS    P+ AS   T  R  +  +  P RA L
Sbjct: 337 PTGTPSRASLTGSPSRASLTGTPSRASLIGTPSRASL--IGTPSRASL 372


HSP 4 Score: 51.2 bits (121), Expect = 2.0e-05
Identity = 32/96 (33.33%), Postives = 44/96 (45.83%), Query Frame = 1 

Query: 112 PSRSRIVQIRPRCRVEQIHESPHCADPRTPHRVDPSLAPRRADPR-TPHRVDPS-SPPRR 171
           P+R+ +++  PR    +    P  A PRTP R  P+    RA P  +PHR  P  +PPR 
Sbjct: 57  PTRASLMRTPPRASPTR---KPPRASPRTPSRASPTRRLPRASPMGSPHRASPMRTPPRA 116

Query: 172 ADPRTPHRADPSLAPHRANPRTASRRSVPAAASSRS 206
           +   TP  A P+  P  A+P     R+ P     R+
Sbjct: 117 SPTGTPSTASPTGTPSSASPTGTPPRASPTGTPPRA 149


HSP 5 Score: 46.6 bits (109), Expect = 4.9e-04
Identity = 33/81 (40.74%), Postives = 36/81 (44.44%), Query Frame = 1 

Query: 139 RTPHRVDPSLAPRRAD-PRTPHRVDPSSPPRRADPRTPHRADPSL---------APHRAN 198
           RT  R      P RA   RTP R  P+  P RA PRTP RA P+          +PHRA+
Sbjct: 46  RTLPRASLMRTPTRASLMRTPPRASPTRKPPRASPRTPSRASPTRRLPRASPMGSPHRAS 105

Query: 199 P-RTASRRSVPAAASSRSTNG 209
           P RT  R S     S+ S  G
Sbjct: 106 PMRTPPRASPTGTPSTASPTG 126


HSP 6 Score: 43.9 bits (102), Expect = 3.1e-03
Identity = 47/128 (36.72%), Postives = 53/128 (41.41%), Query Frame = 1 

Query: 89  HRVVQTRPPPHC--------VDPSPTPRCADPS----RSRIVQIRPRCRVEQIHESPHCA 148
           HR    R PP            P+ TP  A P+    R+      PR    +   SP  A
Sbjct: 102 HRASPMRTPPRASPTGTPSTASPTGTPSSASPTGTPPRASPTGTPPRAWATR---SPSTA 161

Query: 149 D-PRTPHRVDPSLAPRRADP-RTPHRVDPSSPPR---RADP-RTPHRADPSLAPHRANP- 198
              RTP R   +  P RA P RTP    P   PR   RA P RTP RA P+  P RA+P 
Sbjct: 162 SLTRTPSRASLTRWPPRASPTRTP----PRESPRMSHRASPTRTPPRASPTRRPPRASPT 221

[Close]
BLAST of Cla002058 vs. TrEMBL
Match: Q5Z291_NOCFA (Putative transcriptional regulator OS=Nocardia farcinica (strain IFM 10152) GN=NFA_6050 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.5e-07
Identity = 47/138 (34.06%), Postives = 58/138 (42.03%), Query Frame = 1 

Query: 81  PSRSRSFRHR---VVQTRPPPHCVDPSPTPRCADPSRSRIVQIRPRCRVEQIHESPHCAD 140
           P  +R+ R       + RP P    P P PR  DP  +      PR         P  AD
Sbjct: 90  PDAARTARREPGHAAEPRPAP----PGPAPRATDPRATDPRAADPRAT--SAATPPRSAD 149

Query: 141 PRTPHRVDPSLAPRRADPRTPHRVDPSSPPRRADPRT------PHRADPSLAPHRANPRT 200
           PR      P+  PR ADPR      P++PPR ADPR       P  ADP +AP    P  
Sbjct: 150 PRA---ASPATPPRSADPRA---ASPATPPRSADPRAASPATPPRSADPRIAPPATAPGA 209

Query: 201 ASRRSVPAAASSRSTNGR 210
              R+   A  SR+T+ R
Sbjct: 210 TDPRTAAPATPSRATDPR 215

[Close]
BLAST of Cla002058 vs. TrEMBL
Match: Q5Z291_NOCFA (Putative transcriptional regulator OS=Nocardia farcinica (strain IFM 10152) GN=NFA_6050 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.4e-04
Identity = 42/122 (34.43%), Postives = 53/122 (43.44%), Query Frame = 1 

Query: 108 RCADPSRSRIVQIRPRCRVEQIHESPHCADPRTPHRVDPSLAPRRADPRT--PHRVDP-- 167
           R ADP  +R  +  P           H A+PR      P  APR  DPR   P   DP  
Sbjct: 86  RRADPDAARTARREPG----------HAAEPRP---APPGPAPRATDPRATDPRAADPRA 145

Query: 168 ---SSPPRRADPRTPHRADPSLAPHRANPRTASRRSVPAAASSRSTNGRRIVQELLPPHR 223
              ++PPR ADPR    A P+  P  A+PR AS  + P +A  R+ +         PP  
Sbjct: 146 TSAATPPRSADPRA---ASPATPPRSADPRAASPATPPRSADPRAAS------PATPPRS 185


HSP 2 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 46/124 (37.10%), Postives = 50/124 (40.32%), Query Frame = 1 

Query: 93  QTRPPPHCVDPSPTPRCADPSRSRIVQIRPRCRVEQIHESPHCADPRT-----PHRVDPS 152
           ++R P    DP   PR ADP   R V  R   R       P   DPR      P  VDP 
Sbjct: 612 ESRDPRDPRDPRVDPR-ADPRDPRSVDSRADPRAVDPRADPRAVDPRADPRADPRAVDPR 671

Query: 153 LAPRRADPRTPHRVDPSSP-------PRRADPRTPHRADPSLAPHRANPRTASRRSVPAA 205
             PR  DPR P  VDP  P       PR  DPR P   DP   P   +PR    R+ P A
Sbjct: 672 ADPRAIDPRDPRAVDPRDPRAVDPLDPRAVDPRDPRAVDPR-DPRAVDPR--DPRADPRA 731

[Close]
BLAST of Cla002058 vs. TrEMBL
Match: K1VNH9_TRIAC (Uncharacterized protein OS=Trichosporon asahii var. asahii (strain CBS 8904) GN=A1Q2_07476 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 46/124 (37.10%), Postives = 50/124 (40.32%), Query Frame = 1 

Query: 93  QTRPPPHCVDPSPTPRCADPSRSRIVQIRPRCRVEQIHESPHCADPRT-----PHRVDPS 152
           ++R P    DP   PR ADP   R V  R   R       P   DPR      P  VDP 
Sbjct: 498 ESRDPRDPRDPRVDPR-ADPRDPRSVDSRADPRAVDPRADPRAVDPRADPRADPRAVDPR 557

Query: 153 LAPRRADPRTPHRVDPSSP-------PRRADPRTPHRADPSLAPHRANPRTASRRSVPAA 205
             PR  DPR P  VDP  P       PR  DPR P   DP   P   +PR    R+ P A
Sbjct: 558 ADPRAIDPRDPRAVDPRDPRAVDPRDPRAVDPRDPRAVDPR-DPRAVDPR--DPRADPRA 617

[Close]
BLAST of Cla002058 vs. NCBI nr
Match: gi|6599134|emb|CAB63715.1| (hypothetical protein [Homo sapiens])

HSP 1 Score: 70.1 bits (170), Expect = 6.6e-09
Identity = 66/199 (33.17%), Postives = 83/199 (41.71%), Query Frame = 1 

Query: 64  TGSWSHLSAAPLQIHP---PPSRSRSFRHRVVQTRPPPHCVDPSPTPRCADPSRSRIVQI 123
           T S + L+  P +  P   PP  S    HR   TR PP     SPT R   P R+   + 
Sbjct: 179 TPSRASLTRWPPRASPTRTPPRESPRMSHRASPTRTPPRA---SPTRR---PPRASPTRT 238

Query: 124 RPRCRVEQIHESPHCADPRTPHRVDPSLAPRRADPR-TPHRVDPSSPPRRADPRTPHRAD 183
            PR   E +  S   +  R P R  P+  P RA P  +P R  P +PPR A PRTP RA 
Sbjct: 239 PPR---ESLRTSHRASPTRMPPRASPTRRPPRASPTGSPPRASPMTPPR-ASPRTPPRAS 298

Query: 184 PSLAPHRANPRTASRRSVPAAASSRSTNGRRIVQELLPPHRADLFVVASCISFRRRLCIS 243
           P+  P R     AS    P+ AS  +T           P RA L  + S +S  R    +
Sbjct: 299 PTTTPSR-----ASLTRTPSWASPTTT-----------PSRASLMKMESTVSITRTPPRA 351

Query: 244 FLAAAGSWYTPVPPPVRGS 259
                 S  +P   P R S
Sbjct: 359 SPTGTPSRASPTGTPSRAS 351

[Close]
BLAST of Cla002058 vs. NCBI nr
Match: gi|6599134|emb|CAB63715.1| (hypothetical protein [Homo sapiens])

HSP 1 Score: 57.4 bits (137), Expect = 4.4e-05
Identity = 45/145 (31.03%), Postives = 59/145 (40.69%), Query Frame = 1 

Query: 80  PPSRSRSFRHRVVQTRPPPHCVDPSPTPRCAD----PSRSRIVQIRPRCRVEQIHESPHC 139
           PP  S   R         P    P+  P  A     P R+ + ++     +  +  +   
Sbjct: 11  PPRASLMRRPSTASLTRTPSRASPTRMPSRASLKMTPFRASLTKMESTALLRTLPRASLM 70

Query: 140 ADP------RTPHRVDPSLAPRRADPRTPHRVDPSSPPRRADPR-TPHRADPSLAPHRAN 199
             P      RTP R  P+  P RA PRTP R  P+    RA P  +PHRA P   P RA+
Sbjct: 71  RTPTRASLMRTPPRASPTRKPPRASPRTPSRASPTRRLPRASPMGSPHRASPMRTPPRAS 130

Query: 200 ----PRTASRRSVPAAASSRSTNGR 210
               P TAS    P++AS   T  R
Sbjct: 131 PTGTPSTASPTGTPSSASPTGTPPR 155


HSP 2 Score: 55.5 bits (132), Expect = 1.7e-04
Identity = 55/168 (32.74%), Postives = 66/168 (39.29%), Query Frame = 1 

Query: 80  PPSRSRSFRHRVVQTRPPPHCVDPSPTPRCADPSRSRIVQIRPRCRVEQIHESPHCADPR 139
           PP  S    HR   TR PP     SPT R   P R+      PR        +P  A PR
Sbjct: 233 PPRESLRTSHRASPTRMPPRA---SPTRR---PPRASPTGSPPRASPM----TPPRASPR 292

Query: 140 TPHRVDPSLAPRRAD-PRTPHRVDPSS-------------------PPRRADPRTPHRAD 199
           TP R  P+  P RA   RTP    P++                   PPR +   TP RA 
Sbjct: 293 TPPRASPTTTPSRASLTRTPSWASPTTTPSRASLMKMESTVSITRTPPRASPTGTPSRAS 352

Query: 200 PSLAPHRA----NPRTASRRSVPAAASSRSTNGRRIVQELLPPHRADL 224
           P+  P RA    +P  AS    P+ AS   T  R  +  +  P RA L
Sbjct: 353 PTGTPSRASLTGSPSRASLTGTPSRASLIGTPSRASL--IGTPSRASL 388


HSP 3 Score: 51.2 bits (121), Expect = 3.2e-03
Identity = 32/96 (33.33%), Postives = 46/96 (47.92%), Query Frame = 1 

Query: 112 PSRSRIVQIRPRCRVEQIHESPHCADPRTPHRVDPSLAPRRADPR-TPHRVDPS-SPPRR 171
           P+R+ +++  PR    +    P  A PRTP R  P+    RA P  +PHR  P  +PPR 
Sbjct: 73  PTRASLMRTPPRASPTR---KPPRASPRTPSRASPTRRLPRASPMGSPHRASPMRTPPRA 132

Query: 172 ADPRTPHRADPSLAPHRANPRTASRRSVPAAASSRS 206
           +   TP  A P+  P  A+P     R+ P     R+
Sbjct: 133 SPTGTPSTASPTGTPSSASPTGTPPRASPTGTPPRA 165


HSP 4 Score: 43.9 bits (102), Expect = 5.0e-01
Identity = 47/128 (36.72%), Postives = 55/128 (42.97%), Query Frame = 1 

Query: 89  HRVVQTRPPPHC--------VDPSPTPRCADPS----RSRIVQIRPRCRVEQIHESPHCA 148
           HR    R PP            P+ TP  A P+    R+      PR    +   SP  A
Sbjct: 118 HRASPMRTPPRASPTGTPSTASPTGTPSSASPTGTPPRASPTGTPPRAWATR---SPSTA 177

Query: 149 D-PRTPHRVDPSLAPRRADP-RTPHRVDPSSPPR---RADP-RTPHRADPSLAPHRANP- 198
              RTP R   +  P RA P RTP    P   PR   RA P RTP RA P+  P RA+P 
Sbjct: 178 SLTRTPSRASLTRWPPRASPTRTP----PRESPRMSHRASPTRTPPRASPTRRPPRASPT 237


HSP 5 Score: 70.1 bits (170), Expect = 6.6e-09
Identity = 66/199 (33.17%), Postives = 83/199 (41.71%), Query Frame = 1 

Query: 64  TGSWSHLSAAPLQIHP---PPSRSRSFRHRVVQTRPPPHCVDPSPTPRCADPSRSRIVQI 123
           T S + L+  P +  P   PP  S    HR   TR PP     SPT R   P R+   + 
Sbjct: 163 TPSRASLTRWPPRASPTRTPPRESPRMSHRASPTRTPPRA---SPTRR---PPRASPTRT 222

Query: 124 RPRCRVEQIHESPHCADPRTPHRVDPSLAPRRADPR-TPHRVDPSSPPRRADPRTPHRAD 183
            PR   E +  S   +  R P R  P+  P RA P  +P R  P +PPR A PRTP RA 
Sbjct: 223 PPR---ESLRTSHRASPTRMPPRASPTRRPPRASPTGSPPRASPMTPPR-ASPRTPPRAS 282

Query: 184 PSLAPHRANPRTASRRSVPAAASSRSTNGRRIVQELLPPHRADLFVVASCISFRRRLCIS 243
           P+  P R     AS    P+ AS  +T           P RA L  + S +S  R    +
Sbjct: 283 PTTTPSR-----ASLTRTPSWASPTTT-----------PSRASLMKMESTVSITRTPPRA 335

Query: 244 FLAAAGSWYTPVPPPVRGS 259
                 S  +P   P R S
Sbjct: 343 SPTGTPSRASPTGTPSRAS 335

[Close]
BLAST of Cla002058 vs. NCBI nr
Match: gi|187661959|sp|Q9UF83.2|YM012_HUMAN (RecName: Full=Uncharacterized protein DKFZp434B061)

HSP 1 Score: 57.0 bits (136), Expect = 5.7e-05
Identity = 34/76 (44.74%), Postives = 40/76 (52.63%), Query Frame = 1 

Query: 139 RTPHRVDPSLAPRRADPRTPHRVDPSSPPRRADPR-TPHRADPSLAPHRAN----PRTAS 198
           RTP R  P+  P RA PRTP R  P+    RA P  +PHRA P   P RA+    P TAS
Sbjct: 64  RTPPRASPTRKPPRASPRTPSRASPTRRLPRASPMGSPHRASPMRTPPRASPTGTPSTAS 123

Query: 199 RRSVPAAASSRSTNGR 210
               P++AS   T  R
Sbjct: 124 PTGTPSSASPTGTPPR 139


HSP 2 Score: 55.5 bits (132), Expect = 1.7e-04
Identity = 55/168 (32.74%), Postives = 66/168 (39.29%), Query Frame = 1 

Query: 80  PPSRSRSFRHRVVQTRPPPHCVDPSPTPRCADPSRSRIVQIRPRCRVEQIHESPHCADPR 139
           PP  S    HR   TR PP     SPT R   P R+      PR        +P  A PR
Sbjct: 217 PPRESLRTSHRASPTRMPPRA---SPTRR---PPRASPTGSPPRASPM----TPPRASPR 276

Query: 140 TPHRVDPSLAPRRAD-PRTPHRVDPSS-------------------PPRRADPRTPHRAD 199
           TP R  P+  P RA   RTP    P++                   PPR +   TP RA 
Sbjct: 277 TPPRASPTTTPSRASLTRTPSWASPTTTPSRASLMKMESTVSITRTPPRASPTGTPSRAS 336

Query: 200 PSLAPHRA----NPRTASRRSVPAAASSRSTNGRRIVQELLPPHRADL 224
           P+  P RA    +P  AS    P+ AS   T  R  +  +  P RA L
Sbjct: 337 PTGTPSRASLTGSPSRASLTGTPSRASLIGTPSRASL--IGTPSRASL 372


HSP 3 Score: 51.2 bits (121), Expect = 3.2e-03
Identity = 32/96 (33.33%), Postives = 46/96 (47.92%), Query Frame = 1 

Query: 112 PSRSRIVQIRPRCRVEQIHESPHCADPRTPHRVDPSLAPRRADPR-TPHRVDPS-SPPRR 171
           P+R+ +++  PR    +    P  A PRTP R  P+    RA P  +PHR  P  +PPR 
Sbjct: 57  PTRASLMRTPPRASPTR---KPPRASPRTPSRASPTRRLPRASPMGSPHRASPMRTPPRA 116

Query: 172 ADPRTPHRADPSLAPHRANPRTASRRSVPAAASSRS 206
           +   TP  A P+  P  A+P     R+ P     R+
Sbjct: 117 SPTGTPSTASPTGTPSSASPTGTPPRASPTGTPPRA 149


HSP 4 Score: 46.6 bits (109), Expect = 7.8e-02
Identity = 33/81 (40.74%), Postives = 38/81 (46.91%), Query Frame = 1 

Query: 139 RTPHRVDPSLAPRRAD-PRTPHRVDPSSPPRRADPRTPHRADPSL---------APHRAN 198
           RT  R      P RA   RTP R  P+  P RA PRTP RA P+          +PHRA+
Sbjct: 46  RTLPRASLMRTPTRASLMRTPPRASPTRKPPRASPRTPSRASPTRRLPRASPMGSPHRAS 105

Query: 199 P-RTASRRSVPAAASSRSTNG 209
           P RT  R S     S+ S  G
Sbjct: 106 PMRTPPRASPTGTPSTASPTG 126


HSP 5 Score: 43.9 bits (102), Expect = 5.0e-01
Identity = 47/128 (36.72%), Postives = 55/128 (42.97%), Query Frame = 1 

Query: 89  HRVVQTRPPPHC--------VDPSPTPRCADPS----RSRIVQIRPRCRVEQIHESPHCA 148
           HR    R PP            P+ TP  A P+    R+      PR    +   SP  A
Sbjct: 102 HRASPMRTPPRASPTGTPSTASPTGTPSSASPTGTPPRASPTGTPPRAWATR---SPSTA 161

Query: 149 D-PRTPHRVDPSLAPRRADP-RTPHRVDPSSPPR---RADP-RTPHRADPSLAPHRANP- 198
              RTP R   +  P RA P RTP    P   PR   RA P RTP RA P+  P RA+P 
Sbjct: 162 SLTRTPSRASLTRWPPRASPTRTP----PRESPRMSHRASPTRTPPRASPTRRPPRASPT 221


HSP 6 Score: 64.3 bits (155), Expect = 3.6e-07
Identity = 47/138 (34.06%), Postives = 58/138 (42.03%), Query Frame = 1 

Query: 81  PSRSRSFRHR---VVQTRPPPHCVDPSPTPRCADPSRSRIVQIRPRCRVEQIHESPHCAD 140
           P  +R+ R       + RP P    P P PR  DP  +      PR         P  AD
Sbjct: 90  PDAARTARREPGHAAEPRPAP----PGPAPRATDPRATDPRAADPRAT--SAATPPRSAD 149

Query: 141 PRTPHRVDPSLAPRRADPRTPHRVDPSSPPRRADPRT------PHRADPSLAPHRANPRT 200
           PR      P+  PR ADPR      P++PPR ADPR       P  ADP +AP    P  
Sbjct: 150 PRA---ASPATPPRSADPRA---ASPATPPRSADPRAASPATPPRSADPRIAPPATAPGA 209

Query: 201 ASRRSVPAAASSRSTNGR 210
              R+   A  SR+T+ R
Sbjct: 210 TDPRTAAPATPSRATDPR 215

[Close]
BLAST of Cla002058 vs. NCBI nr
Match: gi|499520497|ref|WP_011207137.1| (transcriptional regulator [Nocardia farcinica])

HSP 1 Score: 53.5 bits (127), Expect = 6.3e-04
Identity = 42/122 (34.43%), Postives = 53/122 (43.44%), Query Frame = 1 

Query: 108 RCADPSRSRIVQIRPRCRVEQIHESPHCADPRTPHRVDPSLAPRRADPRT--PHRVDP-- 167
           R ADP  +R  +  P           H A+PR      P  APR  DPR   P   DP  
Sbjct: 86  RRADPDAARTARREPG----------HAAEPRP---APPGPAPRATDPRATDPRAADPRA 145

Query: 168 ---SSPPRRADPRTPHRADPSLAPHRANPRTASRRSVPAAASSRSTNGRRIVQELLPPHR 223
              ++PPR ADPR    A P+  P  A+PR AS  + P +A  R+ +         PP  
Sbjct: 146 TSAATPPRSADPRA---ASPATPPRSADPRAASPATPPRSADPRAAS------PATPPRS 185


HSP 2 Score: 62.0 bits (149), Expect = 1.8e-06
Identity = 46/124 (37.10%), Postives = 50/124 (40.32%), Query Frame = 1 

Query: 93  QTRPPPHCVDPSPTPRCADPSRSRIVQIRPRCRVEQIHESPHCADPRT-----PHRVDPS 152
           ++R P    DP   PR ADP   R V  R   R       P   DPR      P  VDP 
Sbjct: 612 ESRDPRDPRDPRVDPR-ADPRDPRSVDSRADPRAVDPRADPRAVDPRADPRADPRAVDPR 671

Query: 153 LAPRRADPRTPHRVDPSSP-------PRRADPRTPHRADPSLAPHRANPRTASRRSVPAA 205
             PR  DPR P  VDP  P       PR  DPR P   DP   P   +PR    R+ P A
Sbjct: 672 ADPRAIDPRDPRAVDPRDPRAVDPLDPRAVDPRDPRAVDPR-DPRAVDPR--DPRADPRA 731

[Close]
BLAST of Cla002058 vs. NCBI nr
Match: gi|406694905|gb|EKC98222.1| (hypothetical protein A1Q2_07476 [Trichosporon asahii var. asahii CBS 8904])

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-06
Identity = 46/124 (37.10%), Postives = 50/124 (40.32%), Query Frame = 1 

Query: 93  QTRPPPHCVDPSPTPRCADPSRSRIVQIRPRCRVEQIHESPHCADPRT-----PHRVDPS 152
           ++R P    DP   PR ADP   R V  R   R       P   DPR      P  VDP 
Sbjct: 498 ESRDPRDPRDPRVDPR-ADPRDPRSVDSRADPRAVDPRADPRAVDPRADPRADPRAVDPR 557

Query: 153 LAPRRADPRTPHRVDPSSP-------PRRADPRTPHRADPSLAPHRANPRTASRRSVPAA 205
             PR  DPR P  VDP  P       PR  DPR P   DP   P   +PR    R+ P A
Sbjct: 558 ADPRAIDPRDPRAVDPRDPRAVDPRDPRAVDPRDPRAVDPR-DPRAVDPR--DPRADPRA 617

The following BLAST results are available for this feature:
BLAST of Cla002058 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YM012_HUMAN4.1e-1133.17Uncharacterized protein DKFZp434B061 OS=Homo sapiens PE=2 SV=2[more]
BLAST of Cla002058 vs. TrEMBL
Match NameE-valueIdentityDescription
Q5Z291_NOCFA2.5e-0734.06Putative transcriptional regulator OS=Nocardia farcinica (strain IFM 10152) GN=N... [more]
Q5Z291_NOCFA4.4e-0434.43Putative transcriptional regulator OS=Nocardia farcinica (strain IFM 10152) GN=N... [more]
K1VNH9_TRIAC1.2e-0637.10Uncharacterized protein OS=Trichosporon asahii var. asahii (strain CBS 8904) GN=... [more]
BLAST of Cla002058 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|6599134|emb|CAB63715.1|6.6e-0933.17hypothetical protein [Homo sapiens][more]
gi|6599134|emb|CAB63715.1|4.4e-0531.03hypothetical protein [Homo sapiens][more]
gi|187661959|sp|Q9UF83.2|YM012_HUMAN5.7e-0544.74RecName: Full=Uncharacterized protein DKFZp434B061[more]
gi|499520497|ref|WP_011207137.1|6.3e-0434.43transcriptional regulator [Nocardia farcinica][more]
gi|406694905|gb|EKC98222.1|1.8e-0637.10hypothetical protein A1Q2_07476 [Trichosporon asahii var. asahii CBS 8904][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002058Cla002058.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla002058ClCG11G007490Watermelon (Charleston Gray)wcgwmB108
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla002058Watermelon (97103) v2wmwmbB360
Cla002058Melon (DHL92) v3.5.1mewmB429
Cla002058Bottle gourd (USVL1VR-Ls)lsiwmB115