Cla002048 (gene) Watermelon (97103) v1

Overview
NameCla002048
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionInner membrane ALBINO3-like protein (AHRD V1 **-- Q5SNL9_ORYSJ)
LocationChr11 : 529331 .. 530589 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACTTGATCACCATCCTGGATTTGACTGTGTAAGGCTGGTTTATTAAATATGGGGAAAAAATCAATATAATTCTTACACAATACACCTAGGAGACTGAAAAAGTTCTCTCTCATTTTACCATTACCACTTGAAAGTGCAATCAAAGGCATGGATGGGTTGGGCTTTGTAGTTTGATTTATTTAGCTGGTCATCCTATCGTACAAGATGTCTCCTAGAATTCCTTTCATTTCTGAGCTTTGATATGATCAACAAGCTGCCTTACTTGCATTATTTTCATTTTTTTATTTCTAGATCTAAGGTTGGAATTAGTCAAGGGTTAAGTTTGTGGTGTATTTATTGCAGGGTGGAGCTTTATGGTTCCAAAATCTGACCGAGTATCCACATGGAGTTTTCAGCCCCATATTTCCATTTCTAATTGCCAGCTTGCATTTCATTAATGTTCAGGTATTCCAACATTTTCTTGTTTCCAAGTACAAACACATTTCTTTGAGTAGGGTGGTATGTCAGGTGCTTCTGATCTAGCTTGAGTGTTTATGAGGCATGTGAAGATTGCCCGGTGCCATTGGTAAGGGTTCAAGAGGCAATGCAACCTAAGAGTTTTAGAATGGTTGCTGTGCTGGGTATGCAAATGTTTGAAAAGGAAAAATTGGAAGGGCATTTGAAGGGAAGATAGCGGAAACTTACAATAAAGTTGTGGCATTATATGGTCTTCAATTACAAACATGCATGAACTTTCATCAAACATCAGCAGAATGCCAAAAGAAAATTCTTGTTTTTCTTCATTCTTCACTTGCCTACACATTGTTGATTGTCATGAAAGTAGCTATGTATGTTGTTTTGACTTATTGTTGCCAATATTGTTCATTTTTTTGGGCCAGTATAAATTTTCTGGGTTTTCAAATCTCGCCAACACATTTTCAATTTTAATTGTTAACAGGTATGTGCTCATTGCTTAGTTCTTTTGCCCAGGTGTCTTTCAGAAAATCATCATTGGAAAAAGCAACTGGCATATTTGGCATTTTAGCAAAAGTAAGTGTTTAAGATGTTCTTAATGTTGACAGAAATGTACTCAATAACACATGCTTATATTTCTGTCCCATTGCTTTATATATATTTCAGACTGATAAATATATTTTCTGTCTCTGGCAGTACTACAAGCTCTATTTGAATCTACTGACTGTACCACTGTTTTTTATTGGTTACTGTATTCCTCAGGTAATTCTCTTCATGATTTTTTTTGAAGTGGCATTTTAA

mRNA sequence

ATGTCACTTGATCACCATCCTGGATTTGACTGTGGTGGAGCTTTATGGTTCCAAAATCTGACCGAGTATCCACATGGAGTTTTCAGCCCCATATTTCCATTTCTAATTGCCAGCTTGCATTTCATTAATGTTCAGGTGTCTTTCAGAAAATCATCATTGGAAAAAGCAACTGGCATATTTGGCATTTTAGCAAAATACTACAAGCTCTATTTGAATCTACTGACTGTACCACTGTTTTTTATTGGTTACTGTATTCCTCAGGTAATTCTCTTCATGATTTTTTTTGAAGTGGCATTTTAA

Coding sequence (CDS)

ATGTCACTTGATCACCATCCTGGATTTGACTGTGGTGGAGCTTTATGGTTCCAAAATCTGACCGAGTATCCACATGGAGTTTTCAGCCCCATATTTCCATTTCTAATTGCCAGCTTGCATTTCATTAATGTTCAGGTGTCTTTCAGAAAATCATCATTGGAAAAAGCAACTGGCATATTTGGCATTTTAGCAAAATACTACAAGCTCTATTTGAATCTACTGACTGTACCACTGTTTTTTATTGGTTACTGTATTCCTCAGGTAATTCTCTTCATGATTTTTTTTGAAGTGGCATTTTAA

Protein sequence

MSLDHHPGFDCGGALWFQNLTEYPHGVFSPIFPFLIASLHFINVQVSFRKSSLEKATGIFGILAKYYKLYLNLLTVPLFFIGYCIPQVILFMIFFEVAF
Homology
[Close]
BLAST of Cla002048 vs. Swiss-Prot
Match: ALB32_ARATH (ALBINO3-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=ALB3L2 PE=2 SV=2)

HSP 1 Score: 128.3 bits (321), Expect = 4.8e-29
Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 1 

Query: 1   MSLDHHPGFDCGGALWFQNLTEYPHGVFSPIFPFLIASLHFINVQVSFRKSSLEKATGIF 60
           MSLD HPGFD GG LWFQNL++ P G F P+FP LIA+ H+IN+Q+SF  S++ + TG+ 
Sbjct: 190 MSLDGHPGFDSGGVLWFQNLSDLPGGSFGPVFPILIATFHYINIQISFDTSTIRQTTGLT 249

Query: 61  GILAKYYKLYLNLLTVPLFFIGYCIPQ 88
           G+L +YYKLYL +L+VPLFF+GY IPQ
Sbjct: 250 GLLMRYYKLYLEILSVPLFFVGYAIPQ 276

[Close]
BLAST of Cla002048 vs. Swiss-Prot
Match: ALB33_ARATH (ALBINO3-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=ALB3L3 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.2e-25
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 1 

Query: 1   MSLDHHPGFDCGGALWFQNLTEYPHGVFSPIFPFLIASLHFINVQVSFRKSSLEKATGIF 60
           MSLDHHPGFD GGALWFQNLTE P+G++ P+FPFLIA LH+ N Q++F  SS+ K    F
Sbjct: 230 MSLDHHPGFDSGGALWFQNLTEIPNGLYGPLFPFLIAGLHYTNTQITFTASSVHKVDK-F 289

Query: 61  GILAKYYKLYLNLLTVPLFFIGYCIPQ 88
             LAK YK +LNLLT  L+F+ + +PQ
Sbjct: 290 TELAKAYKTFLNLLTCALYFLSFQMPQ 315

[Close]
BLAST of Cla002048 vs. TrEMBL
Match: A0A0A0LJT6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G094350 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.9e-40
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 1 

Query: 1   MSLDHHPGFDCGGALWFQNLTEYPHGVFSPIFPFLIASLHFINVQVSFRKSSLEKATGIF 60
           MSLDH+PGFD GGALWFQNLTEYPHGVF PIFPFLIASLHFINVQ+SFRKSSLEK TGI 
Sbjct: 236 MSLDHYPGFDYGGALWFQNLTEYPHGVFGPIFPFLIASLHFINVQLSFRKSSLEKETGII 295

Query: 61  GILAKYYKLYLNLLTVPLFFIGYCIPQ 88
           GILAKYYKLYLNLLTVPLFFIGYCIPQ
Sbjct: 296 GILAKYYKLYLNLLTVPLFFIGYCIPQ 322

[Close]
BLAST of Cla002048 vs. TrEMBL
Match: B9RFU8_RICCO (Cytochrome oxidase biogenesis protein, putative OS=Ricinus communis GN=RCOM_1437450 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 7.0e-35
Identity = 66/87 (75.86%), Postives = 77/87 (88.51%), Query Frame = 1 

Query: 1   MSLDHHPGFDCGGALWFQNLTEYPHGVFSPIFPFLIASLHFINVQVSFRKSSLEKATGIF 60
           MSLDHHPGFDCGG LWFQNLTEYPHG+  PIFP LIA LH+IN+Q++F K S++K TG+ 
Sbjct: 213 MSLDHHPGFDCGGTLWFQNLTEYPHGIAGPIFPLLIACLHYINIQLAFEKFSVQKTTGLL 272

Query: 61  GILAKYYKLYLNLLTVPLFFIGYCIPQ 88
            +LAKYYKLYL+LLT+PLFFIGYCIPQ
Sbjct: 273 SLLAKYYKLYLDLLTLPLFFIGYCIPQ 299

[Close]
BLAST of Cla002048 vs. TrEMBL
Match: A0A067KCT5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18574 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-32
Identity = 65/87 (74.71%), Postives = 74/87 (85.06%), Query Frame = 1 

Query: 1   MSLDHHPGFDCGGALWFQNLTEYPHGVFSPIFPFLIASLHFINVQVSFRKSSLEKATGIF 60
           MSLDHHPGF+CGG LWFQNLTE+PHGV  PIFP LIASLH+ NVQ+SF K S++K  GI 
Sbjct: 225 MSLDHHPGFECGGTLWFQNLTEFPHGVLGPIFPLLIASLHYANVQLSFDKFSVQKTNGIL 284

Query: 61  GILAKYYKLYLNLLTVPLFFIGYCIPQ 88
            +LAKYYKLYL++L VPLFFIGY IPQ
Sbjct: 285 ALLAKYYKLYLDILAVPLFFIGYSIPQ 311

[Close]
BLAST of Cla002048 vs. TrEMBL
Match: D7SPT7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00150 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 5.2e-30
Identity = 61/87 (70.11%), Postives = 72/87 (82.76%), Query Frame = 1 

Query: 1   MSLDHHPGFDCGGALWFQNLTEYPHGVFSPIFPFLIASLHFINVQVSFRKSSLEKATGIF 60
           MSLDHHPGFD GGALWFQNLTE+P+GV  PIFP LI+ LHFINVQ+SF  SS+ +  G+ 
Sbjct: 214 MSLDHHPGFDSGGALWFQNLTEFPNGVLGPIFPILISGLHFINVQISFSTSSVGQVPGLL 273

Query: 61  GILAKYYKLYLNLLTVPLFFIGYCIPQ 88
           G+LAKYYK YL +LTVP+FF G+ IPQ
Sbjct: 274 GLLAKYYKFYLEILTVPIFFTGFYIPQ 300

[Close]
BLAST of Cla002048 vs. TrEMBL
Match: A0A067FFC1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0082462mg PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-29
Identity = 62/87 (71.26%), Postives = 70/87 (80.46%), Query Frame = 1 

Query: 1   MSLDHHPGFDCGGALWFQNLTEYPHGVFSPIFPFLIASLHFINVQVSFRKSSLEKATGIF 60
           MSLD HPGFDCGG  WFQNLTEYPHGV   IFP L+A LH+ NVQ+SF  SSL K  G+ 
Sbjct: 214 MSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLL 273

Query: 61  GILAKYYKLYLNLLTVPLFFIGYCIPQ 88
           G+LAKYYK YLNL+T+PLFF+GY IPQ
Sbjct: 274 GLLAKYYKSYLNLMTLPLFFLGYYIPQ 300

[Close]
BLAST of Cla002048 vs. NCBI nr
Match: gi|449442253|ref|XP_004138896.1| (PREDICTED: ALBINO3-like protein 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.7e-40
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 1 

Query: 1   MSLDHHPGFDCGGALWFQNLTEYPHGVFSPIFPFLIASLHFINVQVSFRKSSLEKATGIF 60
           MSLDH+PGFD GGALWFQNLTEYPHGVF PIFPFLIASLHFINVQ+SFRKSSLEK TGI 
Sbjct: 236 MSLDHYPGFDYGGALWFQNLTEYPHGVFGPIFPFLIASLHFINVQLSFRKSSLEKETGII 295

Query: 61  GILAKYYKLYLNLLTVPLFFIGYCIPQ 88
           GILAKYYKLYLNLLTVPLFFIGYCIPQ
Sbjct: 296 GILAKYYKLYLNLLTVPLFFIGYCIPQ 322

[Close]
BLAST of Cla002048 vs. NCBI nr
Match: gi|700206225|gb|KGN61344.1| (hypothetical protein Csa_2G094350 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.7e-40
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 1 

Query: 1   MSLDHHPGFDCGGALWFQNLTEYPHGVFSPIFPFLIASLHFINVQVSFRKSSLEKATGIF 60
           MSLDH+PGFD GGALWFQNLTEYPHGVF PIFPFLIASLHFINVQ+SFRKSSLEK TGI 
Sbjct: 236 MSLDHYPGFDYGGALWFQNLTEYPHGVFGPIFPFLIASLHFINVQLSFRKSSLEKETGII 295

Query: 61  GILAKYYKLYLNLLTVPLFFIGYCIPQ 88
           GILAKYYKLYLNLLTVPLFFIGYCIPQ
Sbjct: 296 GILAKYYKLYLNLLTVPLFFIGYCIPQ 322

[Close]
BLAST of Cla002048 vs. NCBI nr
Match: gi|659082281|ref|XP_008441758.1| (PREDICTED: ALBINO3-like protein 2, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 3.5e-40
Identity = 81/87 (93.10%), Postives = 82/87 (94.25%), Query Frame = 1 

Query: 1   MSLDHHPGFDCGGALWFQNLTEYPHGVFSPIFPFLIASLHFINVQVSFRKSSLEKATGIF 60
           MSLDHHPGFD GGALWFQNLTEYPHGVF PIFPFLIASLHFINVQ+SFRKSSL K TGI 
Sbjct: 237 MSLDHHPGFDYGGALWFQNLTEYPHGVFGPIFPFLIASLHFINVQLSFRKSSLGKETGII 296

Query: 61  GILAKYYKLYLNLLTVPLFFIGYCIPQ 88
           GILAKYYKLYLNLLTVPLFFIGYCIPQ
Sbjct: 297 GILAKYYKLYLNLLTVPLFFIGYCIPQ 323

[Close]
BLAST of Cla002048 vs. NCBI nr
Match: gi|659082283|ref|XP_008441760.1| (PREDICTED: ALBINO3-like protein 2, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 3.5e-40
Identity = 81/87 (93.10%), Postives = 82/87 (94.25%), Query Frame = 1 

Query: 1   MSLDHHPGFDCGGALWFQNLTEYPHGVFSPIFPFLIASLHFINVQVSFRKSSLEKATGIF 60
           MSLDHHPGFD GGALWFQNLTEYPHGVF PIFPFLIASLHFINVQ+SFRKSSL K TGI 
Sbjct: 237 MSLDHHPGFDYGGALWFQNLTEYPHGVFGPIFPFLIASLHFINVQLSFRKSSLGKETGII 296

Query: 61  GILAKYYKLYLNLLTVPLFFIGYCIPQ 88
           GILAKYYKLYLNLLTVPLFFIGYCIPQ
Sbjct: 297 GILAKYYKLYLNLLTVPLFFIGYCIPQ 323

[Close]
BLAST of Cla002048 vs. NCBI nr
Match: gi|719982495|ref|XP_010250467.1| (PREDICTED: ALBINO3-like protein 2, chloroplastic isoform X2 [Nelumbo nucifera])

HSP 1 Score: 154.8 bits (390), Expect = 7.6e-35
Identity = 67/87 (77.01%), Postives = 78/87 (89.66%), Query Frame = 1 

Query: 1   MSLDHHPGFDCGGALWFQNLTEYPHGVFSPIFPFLIASLHFINVQVSFRKSSLEKATGIF 60
           MSLDHHPGFDCGG LWFQNLTE PHGVF  IFP LIASLHF+NVQ+SFR S++ KATG+F
Sbjct: 203 MSLDHHPGFDCGGILWFQNLTELPHGVFGSIFPILIASLHFMNVQISFRTSTVGKATGLF 262

Query: 61  GILAKYYKLYLNLLTVPLFFIGYCIPQ 88
           G+LAKYYKLYL +LT+P+F +GYC+PQ
Sbjct: 263 GLLAKYYKLYLQILTLPIFVMGYCVPQ 289

The following BLAST results are available for this feature:
BLAST of Cla002048 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ALB32_ARATH4.8e-2962.07ALBINO3-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=ALB3L2 PE=2 SV=... [more]
ALB33_ARATH7.2e-2560.92ALBINO3-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=ALB3L3 PE=2 SV=... [more]
BLAST of Cla002048 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJT6_CUCSA1.9e-4093.10Uncharacterized protein OS=Cucumis sativus GN=Csa_2G094350 PE=4 SV=1[more]
B9RFU8_RICCO7.0e-3575.86Cytochrome oxidase biogenesis protein, putative OS=Ricinus communis GN=RCOM_1437... [more]
A0A067KCT5_JATCU1.5e-3274.71Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18574 PE=4 SV=1[more]
D7SPT7_VITVI5.2e-3070.11Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00150 PE=4 SV=... [more]
A0A067FFC1_CITSI1.1e-2971.26Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0082462mg PE=3 ... [more]
BLAST of Cla002048 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442253|ref|XP_004138896.1|2.7e-4093.10PREDICTED: ALBINO3-like protein 2, chloroplastic [Cucumis sativus][more]
gi|700206225|gb|KGN61344.1|2.7e-4093.10hypothetical protein Csa_2G094350 [Cucumis sativus][more]
gi|659082281|ref|XP_008441758.1|3.5e-4093.10PREDICTED: ALBINO3-like protein 2, chloroplastic isoform X1 [Cucumis melo][more]
gi|659082283|ref|XP_008441760.1|3.5e-4093.10PREDICTED: ALBINO3-like protein 2, chloroplastic isoform X2 [Cucumis melo][more]
gi|719982495|ref|XP_010250467.1|7.6e-3577.01PREDICTED: ALBINO3-like protein 2, chloroplastic isoform X2 [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001708YidC/ALB3/OXA1/COX18
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0051205protein insertion into membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051205 protein insertion into membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002048Cla002048.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001708Membrane insertase OXA1/ALB3/YidCPANTHERPTHR12428OXA1coord: 1..87
score: 7.8
NoneNo IPR availablePANTHERPTHR12428:SF22ALBINO3-LIKE PROTEIN 2, CHLOROPLASTIC-RELATEDcoord: 1..87
score: 7.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla002048MELO3C008585Melon (DHL92) v3.5.1mewmB429
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla002048Watermelon (97103) v2wmwmbB360
Cla002048Watermelon (Charleston Gray)wcgwmB108
Cla002048Bottle gourd (USVL1VR-Ls)lsiwmB115