Cla002045 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002045
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Inner membrane ALBINO3-like protein (AHRD V1 **-- Q5SNL9_ORYSJ)
Location	Chr11 : 554703 .. 555712 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTTGAGGGTGTAGATCTTCTAATTCTTGCATCCCAATGGGCAGGTGTTGCCAGTATAAGGCAGGTGAGAATTCAGAATTTTCCATGTTTTATTTATTTACCTTATGCCTATTAACAAGGAGATGAAGGTGGATTGAATCAAATCTGTTTATTAGAATCTTTATTCTCCACTCTCCAATTAAAATATATTAGAGAGGATTTAAACATTACTAGTATGGACATTATTACATAATGTGGTCAAGATGAGAGGGAGTCATAAAGATGCCCCAAAAGCTGCACCTGTTATATTGGTCTAGTTTTCTTTTTAATTTGATTTTCAATTGCCTGTGGTTGTGAGATCTCATTGTTCTTTGTACAATTTTATTGCACCCACCCAGACATTACCAGACATTTTAATTTGAAGTTAAATCCACGGTTTCTTCTAGTTGATTTGAGAAATAACCAGCTCGATGAAGTTGACACTCTTTAGTGTTAGACCCAGCAATTTGTCATTGCATCATTTGCTTTTCTGGATTCGTTTGGGATGATATCCATGTTAATTGTTTTTTGAAGCTCACGTTCTGACTATCAATTTGATTCTTTTCATTATTGTTATGTCAGGGGAAAATGGTAGAAGGCATTGCTCACCTGGAAAGAATTGCAAATATGAAAGAGCCAGAAGAACCAAAGAGCAAAGCCCATTATTATGATGGATTGGTTCTGCTAGCTAGGTCTCAACCATACCAGTGATTAGATCATATTTCACTTACCCACTCCCTTTCCCAAGGGGGAAATGATTTTAGAAAAGATTTCACATTCCCTTACCTCAACATGAAAAGTTGCTAAAATCTTATTTCTTGTTGTTACAGTGCTCTATACAATGAAGGTCGTAAGGCTGAAGCTTCCAAATACTTGCAATCAGCTGCAGCTTATAATCCTGCCTACAAAGAATACTTGGATCAATGTGAAGACGACAATGATAAGTTAGTCGGCGATCTTGTCAGCAGCAGGAGAGGAGATTATTGA

mRNA sequence

ATGGAAGTTGAGGGTGTAGATCTTCTAATTCTTGCATCCCAATGGGCAGGTGTTGCCAGTATAAGGCAGGGGAAAATGGTAGAAGGCATTGCTCACCTGGAAAGAATTGCAAATATGAAAGAGCCAGAAGAACCAAAGAGCAAAGCCCATTATTATGATGGATTGGTTCTGCTAGCTAGTGCTCTATACAATGAAGGTCGTAAGGCTGAAGCTTCCAAATACTTGCAATCAGCTGCAGCTTATAATCCTGCCTACAAAGAATACTTGGATCAATGTGAAGACGACAATGATAAGTTAGTCGGCGATCTTGTCAGCAGCAGGAGAGGAGATTATTGA

Coding sequence (CDS)

ATGGAAGTTGAGGGTGTAGATCTTCTAATTCTTGCATCCCAATGGGCAGGTGTTGCCAGTATAAGGCAGGGGAAAATGGTAGAAGGCATTGCTCACCTGGAAAGAATTGCAAATATGAAAGAGCCAGAAGAACCAAAGAGCAAAGCCCATTATTATGATGGATTGGTTCTGCTAGCTAGTGCTCTATACAATGAAGGTCGTAAGGCTGAAGCTTCCAAATACTTGCAATCAGCTGCAGCTTATAATCCTGCCTACAAAGAATACTTGGATCAATGTGAAGACGACAATGATAAGTTAGTCGGCGATCTTGTCAGCAGCAGGAGAGGAGATTATTGA

Protein sequence

MEVEGVDLLILASQWAGVASIRQGKMVEGIAHLERIANMKEPEEPKSKAHYYDGLVLLASALYNEGRKAEASKYLQSAAAYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY

Homology

[Close]

BLAST of Cla002045 vs. Swiss-Prot
Match: ALB33_ARATH (ALBINO3-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=ALB3L3 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.3e-32
Identity = 64/95 (67.37%), Postives = 79/95 (83.16%), Query Frame = 1


Query: 2   EVEGVDLLILASQWAGVASIRQGKMVEGIAHLERIANMKEPEEPKSKAHYYDGLVLLASA 61
           EVE VDLLI+ASQWAGV++IRQGK  EGI HLER+ANMKEP++PKSKAHY D LVL +SA
Sbjct: 457 EVEEVDLLIVASQWAGVSNIRQGKTSEGITHLERVANMKEPDDPKSKAHYLDALVLYSSA 516

Query: 62  LYNEGRKAEASKYLQSAAAYNPAYKEYLDQCEDDN 97
           ++NEGR+ EA+KYL+   AY+P++ E L QCE+D+
Sbjct: 517 IFNEGRREEAAKYLRRVVAYDPSFSELLKQCEEDD 551

[Close]

BLAST of Cla002045 vs. Swiss-Prot
Match: ALB32_ARATH (ALBINO3-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=ALB3L2 PE=2 SV=2)

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-29
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 1


Query: 2   EVEGVDLLILASQWAGVASIRQGKMVEGIAHLERIANMKEPEEPKSKAHYYDGLVLLASA 61
           + E V+LL+LASQWAG A ++QGK+  GI HLER+A ++EP +PKSK HY++ L+LL+SA
Sbjct: 417 DAEDVELLMLASQWAGAAYVQQGKLKSGIIHLERVAKLREPGDPKSKEHYFEALLLLSSA 476

Query: 62  LYNEGRKAEASKYLQSAAAYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY 112
           LY EG+  EA+K L+    +NPAYK  L+QCED+N+ LV DLVS R+  +
Sbjct: 477 LYKEGQSDEAAKILRVVVDHNPAYKPLLEQCEDENE-LVSDLVSRRKDHF 525

[Close]

BLAST of Cla002045 vs. TrEMBL
Match: A0A0A0LHD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G094360 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-52
Identity = 104/110 (94.55%), Postives = 108/110 (98.18%), Query Frame = 1


Query: 2   EVEGVDLLILASQWAGVASIRQGKMVEGIAHLERIANMKEPEEPKSKAHYYDGLVLLASA 61
           EVEGVDLLILASQWAGVA IRQGKMVEGIAHLER+AN+KEPEEPKSKAHYYDGLVLLASA
Sbjct: 136 EVEGVDLLILASQWAGVAFIRQGKMVEGIAHLERVANLKEPEEPKSKAHYYDGLVLLASA 195

Query: 62  LYNEGRKAEASKYLQSAAAYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY 112
           LYNEGRKAEA+KYL+SA AYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY
Sbjct: 196 LYNEGRKAEATKYLKSAVAYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY 245

[Close]

BLAST of Cla002045 vs. TrEMBL
Match: D7SPT7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00150 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 4.4e-38
Identity = 79/106 (74.53%), Postives = 92/106 (86.79%), Query Frame = 1


Query: 6   VDLLILASQWAGVASIRQGKMVEGIAHLERIANMKEPEEPKSKAHYYDGLVLLASALYNE 65
           VDL+ILASQWAG A +RQGK  EG+ HLERIAN+KEP+EPKSKAHY+DGL+LLAS LY E
Sbjct: 468 VDLMILASQWAGAACVRQGKTAEGLVHLERIANLKEPDEPKSKAHYFDGLLLLASTLYRE 527

Query: 66  GRKAEASKYLQSAAAYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY 112
           GR AEA+K+L+ AAAYNPAYKEYL++CE + D  V DLVSSRRGDY
Sbjct: 528 GRNAEAAKHLRKAAAYNPAYKEYLEECERE-DGFVNDLVSSRRGDY 572

[Close]

BLAST of Cla002045 vs. TrEMBL
Match: A0A0V0IIA7_SOLCH (Putative ALBINO3-like protein 3, mitochondrial-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 7.5e-38
Identity = 78/111 (70.27%), Postives = 93/111 (83.78%), Query Frame = 1


Query: 1   MEVEGVDLLILASQWAGVASIRQGKMVEGIAHLERIANMKEPEEPKSKAHYYDGLVLLAS 60
           ME+E VDLLIL+SQWAGVA IRQGKM EG+AHLERIA +KEP++PKSKAHYYDGLVLL+S
Sbjct: 456 MEIEDVDLLILSSQWAGVACIRQGKMGEGLAHLERIATLKEPDDPKSKAHYYDGLVLLSS 515

Query: 61  ALYNEGRKAEASKYLQSAAAYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY 112
            L N GRK +A  YLQ A AY+ +YKE+L QCE++ D +  DLV+SRRGDY
Sbjct: 516 TLINVGRKNDAINYLQMATAYDESYKEFLQQCENEEDDITSDLVTSRRGDY 566

[Close]

BLAST of Cla002045 vs. TrEMBL
Match: K4D6S8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.7e-37
Identity = 77/111 (69.37%), Postives = 93/111 (83.78%), Query Frame = 1


Query: 1   MEVEGVDLLILASQWAGVASIRQGKMVEGIAHLERIANMKEPEEPKSKAHYYDGLVLLAS 60
           ME+E VDLLIL+SQWAGVA IRQGKM EG+AHLERIA +KEP++PKSKAHYYDGLVLL+S
Sbjct: 192 MEIEDVDLLILSSQWAGVACIRQGKMGEGLAHLERIATLKEPDDPKSKAHYYDGLVLLSS 251

Query: 61  ALYNEGRKAEASKYLQSAAAYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY 112
           AL N GRK +A  YLQ A AY+ +Y+ YL QCE++ D +  +LV+SRRGDY
Sbjct: 252 ALINVGRKKDAINYLQMATAYDESYRVYLQQCENEEDDMTNNLVASRRGDY 302

[Close]

BLAST of Cla002045 vs. TrEMBL
Match: A0A0V0IEI3_SOLCH (Putative ALBINO3-like protein 3, mitochondrial-like (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.6e-35
Identity = 74/111 (66.67%), Postives = 90/111 (81.08%), Query Frame = 1


Query: 1   MEVEGVDLLILASQWAGVASIRQGKMVEGIAHLERIANMKEPEEPKSKAHYYDGLVLLAS 60
           ME+E VDLLIL+SQWAGV  IRQGKM EG+AHLERIA +KEP++PKSKAHYYDGLVLL+S
Sbjct: 451 MEIEDVDLLILSSQWAGVTCIRQGKMGEGLAHLERIATLKEPDDPKSKAHYYDGLVLLSS 510

Query: 61  ALYNEGRKAEASKYLQSAAAYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY 112
            L N GRK +A  YL  A AY+ +Y+E+L QCE++ D +  DLV+SRR DY
Sbjct: 511 TLINVGRKKDAINYLLMATAYDESYREFLQQCENEEDVISNDLVTSRRRDY 561

[Close]

BLAST of Cla002045 vs. NCBI nr
Match: gi|659082281|ref|XP_008441758.1| (PREDICTED: ALBINO3-like protein 2, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-52
Identity = 105/110 (95.45%), Postives = 108/110 (98.18%), Query Frame = 1


Query: 2   EVEGVDLLILASQWAGVASIRQGKMVEGIAHLERIANMKEPEEPKSKAHYYDGLVLLASA 61
           EVEGVDLLILASQWAGVASIRQGKMVEGIAHLER+ANMKEPEEPKSKAHYYDGLVLLASA
Sbjct: 465 EVEGVDLLILASQWAGVASIRQGKMVEGIAHLERVANMKEPEEPKSKAHYYDGLVLLASA 524

Query: 62  LYNEGRKAEASKYLQSAAAYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY 112
           LYNEGRKAEA+KYL+SA AYNPAYK YLDQCEDDNDKLVGDLVSSRRGDY
Sbjct: 525 LYNEGRKAEATKYLKSAVAYNPAYKVYLDQCEDDNDKLVGDLVSSRRGDY 574

[Close]

BLAST of Cla002045 vs. NCBI nr
Match: gi|449442253|ref|XP_004138896.1| (PREDICTED: ALBINO3-like protein 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 2.0e-52
Identity = 104/110 (94.55%), Postives = 108/110 (98.18%), Query Frame = 1


Query: 2   EVEGVDLLILASQWAGVASIRQGKMVEGIAHLERIANMKEPEEPKSKAHYYDGLVLLASA 61
           EVEGVDLLILASQWAGVA IRQGKMVEGIAHLER+AN+KEPEEPKSKAHYYDGLVLLASA
Sbjct: 464 EVEGVDLLILASQWAGVAFIRQGKMVEGIAHLERVANLKEPEEPKSKAHYYDGLVLLASA 523

Query: 62  LYNEGRKAEASKYLQSAAAYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY 112
           LYNEGRKAEA+KYL+SA AYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY
Sbjct: 524 LYNEGRKAEATKYLKSAVAYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY 573

[Close]

BLAST of Cla002045 vs. NCBI nr
Match: gi|700206226|gb|KGN61345.1| (hypothetical protein Csa_2G094360 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 2.0e-52
Identity = 104/110 (94.55%), Postives = 108/110 (98.18%), Query Frame = 1


Query: 2   EVEGVDLLILASQWAGVASIRQGKMVEGIAHLERIANMKEPEEPKSKAHYYDGLVLLASA 61
           EVEGVDLLILASQWAGVA IRQGKMVEGIAHLER+AN+KEPEEPKSKAHYYDGLVLLASA
Sbjct: 136 EVEGVDLLILASQWAGVAFIRQGKMVEGIAHLERVANLKEPEEPKSKAHYYDGLVLLASA 195

Query: 62  LYNEGRKAEASKYLQSAAAYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY 112
           LYNEGRKAEA+KYL+SA AYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY
Sbjct: 196 LYNEGRKAEATKYLKSAVAYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY 245

[Close]

BLAST of Cla002045 vs. NCBI nr
Match: gi|1009118107|ref|XP_015875683.1| (PREDICTED: ALBINO3-like protein 2, chloroplastic, partial [Ziziphus jujuba])

HSP 1 Score: 171.8 bits (434), Expect = 6.8e-40
Identity = 81/110 (73.64%), Postives = 97/110 (88.18%), Query Frame = 1


Query: 2   EVEGVDLLILASQWAGVASIRQGKMVEGIAHLERIANMKEPEEPKSKAHYYDGLVLLASA 61
           E+E +DLLILASQWAGVA  RQGK+ EG+ HLERIA ++EPEEP SKAHY+DGL+LL+S 
Sbjct: 387 ELEDIDLLILASQWAGVAYTRQGKIAEGLVHLERIAKIQEPEEPLSKAHYFDGLLLLSSV 446

Query: 62  LYNEGRKAEASKYLQSAAAYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY 112
           LYNEGR+AEA+KYL+ AAAYNPA+ EYL+QCE+D+  LV DLVSSRRGDY
Sbjct: 447 LYNEGRRAEAAKYLRLAAAYNPAFNEYLEQCENDDGTLVSDLVSSRRGDY 496

[Close]

BLAST of Cla002045 vs. NCBI nr
Match: gi|225431027|ref|XP_002273357.1| (PREDICTED: ALBINO3-like protein 2, chloroplastic isoform X1 [Vitis vinifera])

HSP 1 Score: 165.2 bits (417), Expect = 6.3e-38
Identity = 79/106 (74.53%), Postives = 92/106 (86.79%), Query Frame = 1


Query: 6   VDLLILASQWAGVASIRQGKMVEGIAHLERIANMKEPEEPKSKAHYYDGLVLLASALYNE 65
           VDL+ILASQWAG A +RQGK  EG+ HLERIAN+KEP+EPKSKAHY+DGL+LLAS LY E
Sbjct: 468 VDLMILASQWAGAACVRQGKTAEGLVHLERIANLKEPDEPKSKAHYFDGLLLLASTLYRE 527

Query: 66  GRKAEASKYLQSAAAYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY 112
           GR AEA+K+L+ AAAYNPAYKEYL++CE + D  V DLVSSRRGDY
Sbjct: 528 GRNAEAAKHLRKAAAYNPAYKEYLEECERE-DGFVNDLVSSRRGDY 572

The following BLAST results are available for this feature:

BLAST of Cla002045 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ALB33_ARATH	2.3e-32	67.37	ALBINO3-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=ALB3L3 PE=2 SV=...	[more]
ALB32_ARATH	2.4e-29	55.45	ALBINO3-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=ALB3L2 PE=2 SV=...	[more]

BLAST of Cla002045 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHD0_CUCSA	1.4e-52	94.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G094360 PE=4 SV=1	[more]
D7SPT7_VITVI	4.4e-38	74.53	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00150 PE=4 SV=...	[more]
A0A0V0IIA7_SOLCH	7.5e-38	70.27	Putative ALBINO3-like protein 3, mitochondrial-like OS=Solanum chacoense PE=3 SV...	[more]
K4D6S8_SOLLC	3.7e-37	69.37	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0V0IEI3_SOLCH	4.6e-35	66.67	Putative ALBINO3-like protein 3, mitochondrial-like (Fragment) OS=Solanum chacoe...	[more]

BLAST of Cla002045 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082281\|ref\|XP_008441758.1\|	1.2e-52	95.45	PREDICTED: ALBINO3-like protein 2, chloroplastic isoform X1 [Cucumis melo]	[more]
gi\|449442253\|ref\|XP_004138896.1\|	2.0e-52	94.55	PREDICTED: ALBINO3-like protein 2, chloroplastic [Cucumis sativus]	[more]
gi\|700206226\|gb\|KGN61345.1\|	2.0e-52	94.55	hypothetical protein Csa_2G094360 [Cucumis sativus]	[more]
gi\|1009118107\|ref\|XP_015875683.1\|	6.8e-40	73.64	PREDICTED: ALBINO3-like protein 2, chloroplastic, partial [Ziziphus jujuba]	[more]
gi\|225431027\|ref\|XP_002273357.1\|	6.3e-38	74.53	PREDICTED: ALBINO3-like protein 2, chloroplastic isoform X1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051205	protein insertion into membrane
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU05000	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU49991	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002045	Cla002045.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU05000	WMU05000	transcribed_cluster
WMU49991	WMU49991	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 17..91 score: 2.
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 16..91 score: 8.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002045	ClCG11G007410	Watermelon (Charleston Gray)	wcgwmB108
Cla002045	Lsi11G009450	Bottle gourd (USVL1VR-Ls)	lsiwmB115

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002045	Watermelon (97103) v2	wmwmbB360
Cla002045	Melon (DHL92) v3.5.1	mewmB429