Cla002044 (gene) Watermelon (97103) v1

Overview
NameCla002044
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionMitotic-spindle organizing protein 1B (AHRD V1 ***- MZT1B_ARATH)
LocationChr11 : 568676 .. 569362 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATCATTTATAGTATAGGAAACCTTGCTGTGTTCATATTTTCTGAAACATTCATGTTCTTATTTCTTGATTTATCTTAGCATATATTGAACGTGTAATTGGATTAATTTTGGACTTTGTACATGATTGATTTGACCAAAAAAACAAGGAGAGATTGAATGAAAGTTGCACCTTGCTTTGGCTGTTTTAGGCTCTGAGGAGCGTTTTGCCTTTCCCTCTACTGGAGTAATTGAGAGAACACACTAATTTTACCTGAATGTCTTGAAATGTCTTGAAACTTGTTTCTTTTTGTATTTTTGAAGATAATAGGGATTACATGCAACTTTCCAAGTTTAGTTGATTTTTAGTTTTATAATGGTTTGGAATGTTCAAATCCCTGTTTATACCATTGTTAAAATAATAATAATAATTATAAAAAGCTTGAAGCTTGTGAATAATGTAATTTTCTCCTTTATTAGATTCTCCAAATGGATCCAGAGGCTGCACGAACTGCTCGGGAATCACTAGACCTTGCATTTCATATGTCTAACGTACTTGATGCAGGGATCGATCGGCACACTCTCTCTGTCCTCATTGCTCTTTGTGACATGGGTGTGAACCCTGAAGCACTGGCTGCTGTTGTCAAGGAACTACGCTGGGAGCCACCCTCATCAGAGACCGTCGTCTCCGGCAACAAGTCATAA

mRNA sequence

ATGATTCTCCAAATGGATCCAGAGGCTGCACGAACTGCTCGGGAATCACTAGACCTTGCATTTCATATGTCTAACGTACTTGATGCAGGGATCGATCGGCACACTCTCTCTGTCCTCATTGCTCTTTGTGACATGGGTGTGAACCCTGAAGCACTGGCTGCTGTTGTCAAGGAACTACGCTGGGAGCCACCCTCATCAGAGACCGTCGTCTCCGGCAACAAGTCATAA

Coding sequence (CDS)

ATGATTCTCCAAATGGATCCAGAGGCTGCACGAACTGCTCGGGAATCACTAGACCTTGCATTTCATATGTCTAACGTACTTGATGCAGGGATCGATCGGCACACTCTCTCTGTCCTCATTGCTCTTTGTGACATGGGTGTGAACCCTGAAGCACTGGCTGCTGTTGTCAAGGAACTACGCTGGGAGCCACCCTCATCAGAGACCGTCGTCTCCGGCAACAAGTCATAA

Protein sequence

MILQMDPEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRWEPPSSETVVSGNKS
Homology
[Close]
BLAST of Cla002044 vs. Swiss-Prot
Match: MZT1B_ARATH (Mitotic-spindle organizing protein 1B OS=Arabidopsis thaliana GN=GIP1 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-19
Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = 1 

Query: 5  MDPEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRWEP- 64
          MD EA+RTARESL+L F MSN+LD G+DRHTLSVLIALCD+GVNPEALA VVKELR E  
Sbjct: 1  MDEEASRTARESLELVFRMSNILDTGLDRHTLSVLIALCDLGVNPEALATVVKELRRESI 60

Query: 65 PSSET 69
          P S T
Sbjct: 61 PDSVT 65

[Close]
BLAST of Cla002044 vs. Swiss-Prot
Match: MZT1A_ARATH (Mitotic-spindle organizing protein 1A OS=Arabidopsis thaliana GN=GIP2 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.9e-18
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1 

Query: 5  MDPEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRWEPP 64
          M+ EAA TARESL+L F MSN+L+ G+DRHTLSVLIALCD+G+NPEALA +VKELR +  
Sbjct: 1  MNQEAAETARESLELVFRMSNILETGLDRHTLSVLIALCDIGLNPEALATLVKELRRDSA 60

Query: 65 SSETVV 71
          ++ T V
Sbjct: 61 TTTTTV 66

[Close]
BLAST of Cla002044 vs. Swiss-Prot
Match: MZT1_PICSI (Mitotic-spindle organizing protein 1 OS=Picea sitchensis PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-16
Identity = 44/58 (75.86%), Postives = 47/58 (81.03%), Query Frame = 1 

Query: 5  MDPEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRWE 63
          MD  AA+ ARESLDLAF +SN L  G+DRHTLS+LIALC+ GVNPEALAAVVKELR E
Sbjct: 1  MDRTAAQNARESLDLAFSISNFLQTGLDRHTLSILIALCEHGVNPEALAAVVKELRRE 58

[Close]
BLAST of Cla002044 vs. Swiss-Prot
Match: MZT1_TAEGU (Mitotic-spindle organizing protein 1 OS=Taeniopygia guttata GN=mzt1 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.1e-09
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 1 

Query: 14 RESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELR 61
          RE++D+ F +S +L+ G+D  TLS+ + LC+ G+NPEAL++V+KELR
Sbjct: 12 RETMDVLFEISRILNTGLDMETLSICVRLCEQGINPEALSSVIKELR 58

[Close]
BLAST of Cla002044 vs. Swiss-Prot
Match: MZT1_MOUSE (Mitotic-spindle organizing protein 1 OS=Mus musculus GN=Mzt1 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-08
Identity = 27/59 (45.76%), Postives = 40/59 (67.80%), Query Frame = 1 

Query: 7  PEAARTA-----RESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELR 61
          P AA +A     RE++D+   +S +L+ G+D  TLS+ + LC+ G+NPEAL++V+KELR
Sbjct: 7  PGAAASANLNAVRETMDVLLEISRILNTGLDMETLSICVRLCEQGINPEALSSVIKELR 65

[Close]
BLAST of Cla002044 vs. TrEMBL
Match: A0A0A0LMZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G094370 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-27
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 1 

Query: 5  MDPEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRWEPP 64
          MD EAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELR EPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 65 SSETVVSGNKS 76
          SS+T+VS NKS
Sbjct: 61 SSDTIVSSNKS 71

[Close]
BLAST of Cla002044 vs. TrEMBL
Match: A0A0D2TES9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G288400 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-22
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 1 

Query: 5  MDPEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRWEPP 64
          MDPEAARTARESLDLAFHMSN+LD G+DRHTLSVLIALCD+G+NPEALAAVVKEL+ EPP
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGLNPEALAAVVKELQREPP 60

Query: 65 SSETVVSGN 74
           S  + S +
Sbjct: 61 PSTPLSSSS 69

[Close]
BLAST of Cla002044 vs. TrEMBL
Match: C6T5S8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G068900 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.0e-22
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 1 

Query: 5  MDPEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRWEPP 64
          MDPEAARTARESLDLAFHMSN+LD G+DRHTLSVLIALCD+GVNPEALAAVVKELR E P
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELRKEKP 60

Query: 65 S 66
          S
Sbjct: 61 S 61

[Close]
BLAST of Cla002044 vs. TrEMBL
Match: A0A0B2PDD0_GLYSO (Mitotic-spindle organizing protein 1B OS=Glycine soja GN=glysoja_038443 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.0e-22
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 1 

Query: 5  MDPEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRWEPP 64
          MDPEAARTARESLDLAFHMSN+LD G+DRHTLSVLIALCD+GVNPEALAAVVKELR E P
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELRKEKP 60

Query: 65 S 66
          S
Sbjct: 61 S 61

[Close]
BLAST of Cla002044 vs. TrEMBL
Match: I1J6X9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G100100 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.0e-22
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 1 

Query: 5  MDPEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRWEPP 64
          MDPEAARTARESLDLAFHMSN+LD G+DRHTLSVLIALCD+GVNPEALAAVVKELR E P
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELRKEKP 60

Query: 65 S 66
          S
Sbjct: 61 S 61

[Close]
BLAST of Cla002044 vs. NCBI nr
Match: gi|778668078|ref|XP_011649034.1| (PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-27
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 1 

Query: 5  MDPEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRWEPP 64
          MD EAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELR EPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 65 SSETVVSGNKS 76
          SS+T+VS NKS
Sbjct: 61 SSDTIVSSNKS 71

[Close]
BLAST of Cla002044 vs. NCBI nr
Match: gi|659082266|ref|XP_008441751.1| (PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 7.6e-27
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 1 

Query: 5  MDPEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRWEPP 64
          MD EAARTARESLDLAFHMSNVLD+GIDRHTLSVLIALCDMGVNPEALAAVVKELR EPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDSGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 65 SSETVVSGNKS 76
          SSET VS NKS
Sbjct: 61 SSETNVSSNKS 71

[Close]
BLAST of Cla002044 vs. NCBI nr
Match: gi|823215102|ref|XP_012440309.1| (PREDICTED: mitotic-spindle organizing protein 1B-like [Gossypium raimondii])

HSP 1 Score: 112.8 bits (281), Expect = 2.5e-22
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 1 

Query: 5  MDPEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRWEPP 64
          MDPEAARTARESLDLAFHMSN+LD G+DRHTLSVLIALCD+G+NPEALAAVVKEL+ EPP
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGLNPEALAAVVKELQREPP 60

Query: 65 SSETVVSGN 74
           S  + S +
Sbjct: 61 PSTPLSSSS 69

[Close]
BLAST of Cla002044 vs. NCBI nr
Match: gi|763785935|gb|KJB53006.1| (hypothetical protein B456_008G288400 [Gossypium raimondii])

HSP 1 Score: 112.8 bits (281), Expect = 2.5e-22
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 1 

Query: 5  MDPEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRWEPP 64
          MDPEAARTARESLDLAFHMSN+LD G+DRHTLSVLIALCD+G+NPEALAAVVKEL+ EPP
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGLNPEALAAVVKELQREPP 60

Query: 65 SSETVVSGN 74
           S  + S +
Sbjct: 61 PSTPLSSSS 69

[Close]
BLAST of Cla002044 vs. NCBI nr
Match: gi|356504256|ref|XP_003520913.1| (PREDICTED: mitotic-spindle organizing protein 1B [Glycine max])

HSP 1 Score: 112.1 bits (279), Expect = 4.3e-22
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 1 

Query: 5  MDPEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRWEPP 64
          MDPEAARTARESLDLAFHMSN+LD G+DRHTLSVLIALCD+GVNPEALAAVVKELR E P
Sbjct: 1  MDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELRKEKP 60

Query: 65 S 66
          S
Sbjct: 61 S 61

The following BLAST results are available for this feature:
BLAST of Cla002044 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MZT1B_ARATH1.2e-1976.92Mitotic-spindle organizing protein 1B OS=Arabidopsis thaliana GN=GIP1 PE=1 SV=1[more]
MZT1A_ARATH4.9e-1866.67Mitotic-spindle organizing protein 1A OS=Arabidopsis thaliana GN=GIP2 PE=1 SV=1[more]
MZT1_PICSI1.2e-1675.86Mitotic-spindle organizing protein 1 OS=Picea sitchensis PE=3 SV=1[more]
MZT1_TAEGU7.1e-0951.06Mitotic-spindle organizing protein 1 OS=Taeniopygia guttata GN=mzt1 PE=3 SV=1[more]
MZT1_MOUSE2.7e-0845.76Mitotic-spindle organizing protein 1 OS=Mus musculus GN=Mzt1 PE=1 SV=1[more]
BLAST of Cla002044 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMZ6_CUCSA1.1e-2792.96Uncharacterized protein OS=Cucumis sativus GN=Csa_2G094370 PE=4 SV=1[more]
A0A0D2TES9_GOSRA1.8e-2279.71Uncharacterized protein OS=Gossypium raimondii GN=B456_008G288400 PE=4 SV=1[more]
C6T5S8_SOYBN3.0e-2290.16Uncharacterized protein OS=Glycine max GN=GLYMA_03G068900 PE=2 SV=1[more]
A0A0B2PDD0_GLYSO3.0e-2290.16Mitotic-spindle organizing protein 1B OS=Glycine soja GN=glysoja_038443 PE=4 SV=... [more]
I1J6X9_SOYBN3.0e-2290.16Uncharacterized protein OS=Glycine max GN=GLYMA_01G100100 PE=4 SV=1[more]
BLAST of Cla002044 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778668078|ref|XP_011649034.1|1.5e-2792.96PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis sativus][more]
gi|659082266|ref|XP_008441751.1|7.6e-2792.96PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo][more]
gi|823215102|ref|XP_012440309.1|2.5e-2279.71PREDICTED: mitotic-spindle organizing protein 1B-like [Gossypium raimondii][more]
gi|763785935|gb|KJB53006.1|2.5e-2279.71hypothetical protein B456_008G288400 [Gossypium raimondii][more]
gi|356504256|ref|XP_003520913.1|4.3e-2290.16PREDICTED: mitotic-spindle organizing protein 1B [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022214MZT1
Vocabulary: Cellular Component
TermDefinition
GO:0008274gamma-tubulin ring complex
Vocabulary: Biological Process
TermDefinition
GO:0033566gamma-tubulin complex localization
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0033566 gamma-tubulin complex localization
cellular_component GO:0008274 gamma-tubulin ring complex
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU17321watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU24233watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU57844watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002044Cla002044.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU24233WMU24233transcribed_cluster
WMU57844WMU57844transcribed_cluster
WMU17321WMU17321transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022214Mitotic-spindle organizing protein 1PANTHERPTHR28520FAMILY NOT NAMEDcoord: 1..72
score: 4.4
IPR022214Mitotic-spindle organizing protein 1PFAMPF12554MOZART1coord: 14..60
score: 4.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla002044Cla97C11G215980Watermelon (97103) v2wmwmbB360
Cla002044MELO3C008583Melon (DHL92) v3.5.1mewmB429
Cla002044ClCG11G007400Watermelon (Charleston Gray)wcgwmB108
Cla002044Lsi11G009460Bottle gourd (USVL1VR-Ls)lsiwmB115
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None