Cla002041 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002041
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr8 : 10412719 .. 10413366 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACGCCTACAGACGCCGAAATGAATGACGCCCTCACAATCATCGCCAAACCGGGGTCAGAGTGGAACACTTCCCCAAAGGGCATTCAGTCATTGGCGCCTAACTGCTTGATCGCCGAGGCCAACCTTTGGCTTTATTTCATCAAGCGGTCGCTGCTCCCCACAACGCATGACGCCTCAATTTCAAGAGATCGCGCCATGGTCATCTACTGCATCATGAGGGGAATTAAGCTGGACGTGGGACGCATCATTGCCCCACAGATTTGGGGGTTGTTCTTCAAGCCAAGGAGTCAGTTATTCTTCTCCTTTCTTGTGACTAGACTGTGCGCCAACGTAGAGTTCATGGAGGATGCGCCAATCAGAGCAGTGAACGGAGTCCTTTCAACGCAAAGTTTGAGACGAATATTAAAGGACTCACCGCATCTGCTTGACGCGGTCAACTCAAAGAAGAGGTCGCCAAAGTCACAAGAACCATTATCCTCCAACCTCCTCAACCAAAGAAAAGGAAACTGGTCAAAAAGAATTTTGAGATTCAGGCGTCGAGTTCACAACCTAGTGAAGCCGAAGAAGCTCTTCAGCTCGACGCCTACACCCAAGCCTTATACTCCTCCCAGTGGAGAGGTATTATCTTTTATCTTTCTTTGA

mRNA sequence

ATGTCGACGCCTACAGACGCCGAAATGAATGACGCCCTCACAATCATCGCCAAACCGGGGTCAGAGTGGAACACTTCCCCAAAGGGCATTCAGTCATTGGCGCCTAACTGCTTGATCGCCGAGGCCAACCTTTGGCTTTATTTCATCAAGCGGTCGCTGCTCCCCACAACGCATGACGCCTCAATTTCAAGAGATCGCGCCATGGTCATCTACTGCATCATGAGGGGAATTAAGCTGGACGTGGGACGCATCATTGCCCCACAGATTTGGGGGTTGTTCTTCAAGCCAAGGAGTCAGTTATTCTTCTCCTTTCTTGTGACTAGACTGTGCGCCAACGTAGAGTTCATGGAGGATGCGCCAATCAGAGCAGTGAACGGAGTCCTTTCAACGCAAAGTTTGAGACGAATATTAAAGGACTCACCGCATCTGCTTGACGCGGTCAACTCAAAGAAGAGGTCGCCAAAGTCACAAGAACCATTATCCTCCAACCTCCTCAACCAAAGAAAAGGAAACTGGTCAAAAAGAATTTTGAGATTCAGGCGTCGAGTTCACAACCTAGTGAAGCCGAAGAAGCTCTTCAGCTCGACGCCTACACCCAAGCCTTATACTCCTCCCAGTGGAGAGGTATTATCTTTTATCTTTCTTTGA

Coding sequence (CDS)

ATGTCGACGCCTACAGACGCCGAAATGAATGACGCCCTCACAATCATCGCCAAACCGGGGTCAGAGTGGAACACTTCCCCAAAGGGCATTCAGTCATTGGCGCCTAACTGCTTGATCGCCGAGGCCAACCTTTGGCTTTATTTCATCAAGCGGTCGCTGCTCCCCACAACGCATGACGCCTCAATTTCAAGAGATCGCGCCATGGTCATCTACTGCATCATGAGGGGAATTAAGCTGGACGTGGGACGCATCATTGCCCCACAGATTTGGGGGTTGTTCTTCAAGCCAAGGAGTCAGTTATTCTTCTCCTTTCTTGTGACTAGACTGTGCGCCAACGTAGAGTTCATGGAGGATGCGCCAATCAGAGCAGTGAACGGAGTCCTTTCAACGCAAAGTTTGAGACGAATATTAAAGGACTCACCGCATCTGCTTGACGCGGTCAACTCAAAGAAGAGGTCGCCAAAGTCACAAGAACCATTATCCTCCAACCTCCTCAACCAAAGAAAAGGAAACTGGTCAAAAAGAATTTTGAGATTCAGGCGTCGAGTTCACAACCTAGTGAAGCCGAAGAAGCTCTTCAGCTCGACGCCTACACCCAAGCCTTATACTCCTCCCAGTGGAGAGGTATTATCTTTTATCTTTCTTTGA

Protein sequence

MSTPTDAEMNDALTIIAKPGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDASISRDRAMVIYCIMRGIKLDVGRIIAPQIWGLFFKPRSQLFFSFLVTRLCANVEFMEDAPIRAVNGVLSTQSLRRILKDSPHLLDAVNSKKRSPKSQEPLSSNLLNQRKGNWSKRILRFRRRVHNLVKPKKLFSSTPTPKPYTPPSGEVLSFIFL

Homology

[Close]

BLAST of Cla002041 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.8e-10
Identity = 42/138 (30.43%), Postives = 73/138 (52.90%), Query Frame = 1


Query: 2   STPTDAEMNDALTIIAKPGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDAS 61
           S  TD ++   L  +A  G+ W  SP+G  +     L   A +W +F+    +P+TH  +
Sbjct: 78  SEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKT 137

Query: 62  ISRDRAMVIYCIMRGIKLDVGRIIAPQIWGL-FFKPRSQLFFSFLVTRLC--ANVEFMED 121
           +++DR +++Y I+ GI +++  I   +I      + R  L+F  L+T+L   ANV + +D
Sbjct: 138 VAKDRVLLLYSILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKD 197

Query: 122 APIRAVNGVLSTQSLRRI 137
             I    G +ST S+ RI
Sbjct: 198 EAIVHNAGAISTLSISRI 215

[Close]

BLAST of Cla002041 vs. TrEMBL
Match: W9S7D3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.9e-09
Identity = 29/103 (28.16%), Postives = 61/103 (59.22%), Query Frame = 1


Query: 8   EMNDALTIIAKPGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDASISRDRA 67
           ++++ +  +   G+EW  + +G  +    CL     +W +F++  L+P++H   + ++RA
Sbjct: 123 QLDEVINELCVEGTEWWRATRGSMTFPKECLQPGPKIWYHFLRFRLMPSSHYRLVHKERA 182

Query: 68  MVIYCIMRGIKLDVGRIIAPQIWGLFFKPRSQLFFSFLVTRLC 111
           +++YC+M+G  L+VGR+I  Q+     +    L+F  L+T+LC
Sbjct: 183 ILLYCMMKGRPLNVGRMIRQQVGVCAGRKNGGLWFPSLITQLC 225

[Close]

BLAST of Cla002041 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.4e-09
Identity = 42/160 (26.25%), Postives = 80/160 (50.00%), Query Frame = 1


Query: 6   DAEMNDALTIIAKPGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDASISRD 65
           + ++ + L  IA  G++W  S KG  +   + L   A +W +F+   LL +TH  +ISR+
Sbjct: 154 EEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRN 213

Query: 66  RAMVIYCIMRGIKLDVGRIIAPQIWGLFFKPRSQLFFSFLVTRLC--ANVEFMEDAPIRA 125
           RA+++Y ++ G  ++VGR+I  QI     K +  L+F  L++ LC  ++V +    P   
Sbjct: 214 RAILLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELCIQSHVAWEASEPRLR 273

Query: 126 VNGVLSTQSLRRILKDSPHLLDAVNSKKRSPKSQEPLSSN 164
             G +   ++ RI        +    ++   +   P +S+
Sbjct: 274 NTGAMDLVAITRISSGRSEKSEKGEEEEEQDEPSRPSTSH 313

[Close]

BLAST of Cla002041 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 1


Query: 44  LWLYFIKRSLLPTTHDASISRDRAMVIYCIMRGIKLDVGRIIAPQIWGLFFKPRSQLFFS 103
           +WL  IK+ ++PT H ++IS +R M++YCIM+ I +++G+II+  I  L   PR    FS
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 104 FLVTRLCANVEFM-EDAP-IRAVNGVLSTQSLRRIL 138
           +L+ +LC     M E  P +   +G+    +L RI+
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRII 123

[Close]

BLAST of Cla002041 vs. TrEMBL
Match: A0A0A0L2P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-07
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1


Query: 1  MSTPTDAEMNDALTIIAKPGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDA 60
          +  P   ++  AL  +  P +  + +P G   L P+ L  EA +WL F+K+ ++PT HD 
Sbjct: 10 LKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDN 69

Query: 61 SISRDRAMVIYCIMRGIKLDV 82
          +IS +R M++YCIM+ I ++V
Sbjct: 70 NISMERVMLVYCIMKEILVEV 90

[Close]

BLAST of Cla002041 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 72.8 bits (177), Expect = 8.3e-10
Identity = 42/138 (30.43%), Postives = 73/138 (52.90%), Query Frame = 1


Query: 2   STPTDAEMNDALTIIAKPGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDAS 61
           S  TD ++   L  +A  G+ W  SP+G  +     L   A +W +F+    +P+TH  +
Sbjct: 78  SEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKT 137

Query: 62  ISRDRAMVIYCIMRGIKLDVGRIIAPQIWGL-FFKPRSQLFFSFLVTRLC--ANVEFMED 121
           +++DR +++Y I+ GI +++  I   +I      + R  L+F  L+T+L   ANV + +D
Sbjct: 138 VAKDRVLLLYSILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKD 197

Query: 122 APIRAVNGVLSTQSLRRI 137
             I    G +ST S+ RI
Sbjct: 198 EAIVHNAGAISTLSISRI 215

[Close]

BLAST of Cla002041 vs. NCBI nr
Match: gi|703121924|ref|XP_010102456.1| (hypothetical protein L484_006967 [Morus notabilis])

HSP 1 Score: 69.7 bits (169), Expect = 7.0e-09
Identity = 29/103 (28.16%), Postives = 61/103 (59.22%), Query Frame = 1


Query: 8   EMNDALTIIAKPGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDASISRDRA 67
           ++++ +  +   G+EW  + +G  +    CL     +W +F++  L+P++H   + ++RA
Sbjct: 123 QLDEVINELCVEGTEWWRATRGSMTFPKECLQPGPKIWYHFLRFRLMPSSHYRLVHKERA 182

Query: 68  MVIYCIMRGIKLDVGRIIAPQIWGLFFKPRSQLFFSFLVTRLC 111
           +++YC+M+G  L+VGR+I  Q+     +    L+F  L+T+LC
Sbjct: 183 ILLYCMMKGRPLNVGRMIRQQVGVCAGRKNGGLWFPSLITQLC 225

[Close]

BLAST of Cla002041 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 69.3 bits (168), Expect = 9.2e-09
Identity = 42/160 (26.25%), Postives = 80/160 (50.00%), Query Frame = 1


Query: 6   DAEMNDALTIIAKPGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDASISRD 65
           + ++ + L  IA  G++W  S KG  +   + L   A +W +F+   LL +TH  +ISR+
Sbjct: 154 EEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRN 213

Query: 66  RAMVIYCIMRGIKLDVGRIIAPQIWGLFFKPRSQLFFSFLVTRLC--ANVEFMEDAPIRA 125
           RA+++Y ++ G  ++VGR+I  QI     K +  L+F  L++ LC  ++V +    P   
Sbjct: 214 RAILLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELCIQSHVAWEASEPRLR 273

Query: 126 VNGVLSTQSLRRILKDSPHLLDAVNSKKRSPKSQEPLSSN 164
             G +   ++ RI        +    ++   +   P +S+
Sbjct: 274 NTGAMDLVAITRISSGRSEKSEKGEEEEEQDEPSRPSTSH 313

[Close]

BLAST of Cla002041 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-08
Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 1


Query: 44  LWLYFIKRSLLPTTHDASISRDRAMVIYCIMRGIKLDVGRIIAPQIWGLFFKPRSQLFFS 103
           +WL  IK+ ++PT H ++IS +R M++YCIM+ I +++G+II+  I  L   PR    FS
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 104 FLVTRLCANVEFM-EDAP-IRAVNGVLSTQSLRRIL 138
           +L+ +LC     M E  P +   +G+    +L RI+
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRII 123

[Close]

BLAST of Cla002041 vs. NCBI nr
Match: gi|700199714|gb|KGN54872.1| (hypothetical protein Csa_4G569710 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-07
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1


Query: 1  MSTPTDAEMNDALTIIAKPGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDA 60
          +  P   ++  AL  +  P +  + +P G   L P+ L  EA +WL F+K+ ++PT HD 
Sbjct: 10 LKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDN 69

Query: 61 SISRDRAMVIYCIMRGIKLDV 82
          +IS +R M++YCIM+ I ++V
Sbjct: 70 NISMERVMLVYCIMKEILVEV 90

The following BLAST results are available for this feature:

BLAST of Cla002041 vs. TrEMBL


Match Name	E-value	Identity	Description
W9QTD9_9ROSA	5.8e-10	30.43	Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1	[more]
W9S7D3_9ROSA	4.9e-09	28.16	Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1	[more]
W9RBS1_9ROSA	6.4e-09	26.25	Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1	[more]
A0A0A0LAN0_CUCSA	1.4e-08	36.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1	[more]
A0A0A0L2P0_CUCSA	1.6e-07	35.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1	[more]

BLAST of Cla002041 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703087370\|ref\|XP_010093253.1\|	8.3e-10	30.43	hypothetical protein L484_022412 [Morus notabilis]	[more]
gi\|703121924\|ref\|XP_010102456.1\|	7.0e-09	28.16	hypothetical protein L484_006967 [Morus notabilis]	[more]
gi\|703082781\|ref\|XP_010092041.1\|	9.2e-09	26.25	hypothetical protein L484_000844 [Morus notabilis]	[more]
gi\|700202594\|gb\|KGN57727.1\|	2.0e-08	36.46	hypothetical protein Csa_3G263250 [Cucumis sativus]	[more]
gi\|700199714\|gb\|KGN54872.1\|	2.3e-07	35.80	hypothetical protein Csa_4G569710 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002041	Cla002041.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002041	Cucumber (Gy14) v1	cgywmB656
Cla002041	Wild cucumber (PI 183967)	cpiwmB490
Cla002041	Watermelon (Charleston Gray)	wcgwmB410
Cla002041	Cucumber (Chinese Long) v2	cuwmB475
Cla002041	Cucumber (Gy14) v2	cgybwmB446
Cla002041	Cucumber (Chinese Long) v3	cucwmB501
Cla002041	Watermelon (97103) v2	wmwmbB105